RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 FAM173BQ6P4H8 233 aa13.25□□□□□ -0.29
SYNPO-202ENST00000394243 CROCCP2Q86T23 111 aa13.25□□□□□ -0.29
SYNPO-202ENST00000394243 DDX41Q9UJV9 622 aaKnown RBP13.25□□□□□ -0.29
SYNPO-202ENST00000394243 DAPK1P53355 1430 aa13.25□□□□□ -0.29
SYNPO-202ENST00000394243 LUC7L3O95232 432 aaKnown RBP13.25□□□□□ -0.29
SYNPO-202ENST00000394243 CHMLP26374 656 aa13.25□□□□□ -0.29
SYNPO-202ENST00000394243 GUCY2FP51841 1108 aa13.25□□□□□ -0.29
SYNPO-202ENST00000394243 DTHD1Q6ZMT9 781 aa13.25□□□□□ -0.29
SYNPO-202ENST00000394243 SLF1Q9BQI6 1058 aa13.25□□□□□ -0.29
SYNPO-202ENST00000394243 CEP104O60308 925 aa13.24□□□□□ -0.29
SYNPO-202ENST00000394243 MTMR3Q13615 1198 aa13.24□□□□□ -0.29
SYNPO-202ENST00000394243 NME9Q86XW9 330 aa13.24□□□□□ -0.29
SYNPO-202ENST00000394243 TACC3Q9Y6A5 838 aa13.24□□□□□ -0.29
SYNPO-202ENST00000394243 FGD5Q6ZNL6 1462 aa13.24□□□□□ -0.29
SYNPO-202ENST00000394243 GOLGA8KD6RF30 607 aa13.24□□□□□ -0.29
SYNPO-202ENST00000394243 SH3BGRP55822 239 aaPredicted RBP13.24□□□□□ -0.29
SYNPO-202ENST00000394243 ATP8B2P98198 1209 aa13.24□□□□□ -0.29
SYNPO-202ENST00000394243 MAPK8IP1Q9UQF2 711 aa13.24□□□□□ -0.29
SYNPO-202ENST00000394243 SYNRGQ9UMZ2 1314 aa13.24□□□□□ -0.29
SYNPO-202ENST00000394243 RXRAP19793 462 aa13.24□□□□□ -0.29
SYNPO-202ENST00000394243 NAPAP54920 295 aa13.24□□□□□ -0.29
SYNPO-202ENST00000394243 NLRP12P59046 1061 aa13.24□□□□□ -0.29
SYNPO-202ENST00000394243 PPP2R5AQ15172 486 aa13.24□□□□□ -0.29
SYNPO-202ENST00000394243 CFAP221Q4G0U5 840 aa13.24□□□□□ -0.29
SYNPO-202ENST00000394243 DENND2CQ68D51 928 aa13.24□□□□□ -0.29
SYNPO-202ENST00000394243 FAF1Q9UNN5 650 aaPredicted RBP13.24□□□□□ -0.29
SYNPO-202ENST00000394243 NAIPQ13075 1403 aa13.24□□□□□ -0.29
SYNPO-202ENST00000394243 CCDC14Q49A88 953 aa13.24□□□□□ -0.29
SYNPO-202ENST00000394243 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.24□□□□□ -0.29
SYNPO-202ENST00000394243 VWA3AA6NCI4 1184 aa13.24□□□□□ -0.29
SYNPO-202ENST00000394243 E2F4Q16254 413 aa13.24□□□□□ -0.29
SYNPO-202ENST00000394243 ANKRD20A3Q5VUR7 823 aa13.24□□□□□ -0.29
SYNPO-202ENST00000394243 TTC19Q6DKK2 380 aaPredicted RBP13.24□□□□□ -0.29
SYNPO-202ENST00000394243 PPP1R21Q6ZMI0 780 aa13.24□□□□□ -0.29
SYNPO-202ENST00000394243 PDE11AQ9HCR9 933 aa13.24□□□□□ -0.29
SYNPO-202ENST00000394243 CCDC61Q9Y6R9 512 aa13.24□□□□□ -0.29
SYNPO-202ENST00000394243 BAG2O95816 211 aa13.23□□□□□ -0.29
SYNPO-202ENST00000394243 LRMPQ12912 555 aa13.23□□□□□ -0.29
SYNPO-202ENST00000394243 GEN1Q17RS7 908 aa13.23□□□□□ -0.29
SYNPO-202ENST00000394243 PHLDB3Q6NSJ2 640 aa13.23□□□□□ -0.29
SYNPO-202ENST00000394243 DHX32Q7L7V1 743 aaKnown RBP13.23□□□□□ -0.29
SYNPO-202ENST00000394243 CCDC65Q8IXS2 484 aa13.23□□□□□ -0.29
SYNPO-202ENST00000394243 MRPL50Q8N5N7 158 aaKnown RBP13.23□□□□□ -0.29
SYNPO-202ENST00000394243 ANKRD42Q8N9B4 389 aa13.23□□□□□ -0.29
SYNPO-202ENST00000394243 RAD50Q92878 1312 aa13.23□□□□□ -0.29
SYNPO-202ENST00000394243 SLC4A4Q9Y6R1 1079 aa13.23□□□□□ -0.29
SYNPO-202ENST00000394243 RNF40O75150 1001 aa13.23□□□□□ -0.29
SYNPO-202ENST00000394243 KRT79Q5XKE5 535 aa13.23□□□□□ -0.29
SYNPO-202ENST00000394243 DPH6Q7L8W6 267 aa13.23□□□□□ -0.29
SYNPO-202ENST00000394243 CSRNP2Q9H175 543 aa13.23□□□□□ -0.29
SYNPO-202ENST00000394243 EFCAB8A8MWE9 144 aa13.23□□□□□ -0.29
SYNPO-202ENST00000394243 KRT9P35527 623 aa13.23□□□□□ -0.29
SYNPO-202ENST00000394243 PRR16Q569H4 304 aa13.23□□□□□ -0.29
SYNPO-202ENST00000394243 BEND3Q5T5X7 828 aa13.23□□□□□ -0.29
SYNPO-202ENST00000394243 MAK16Q9BXY0 300 aaKnown RBP13.23□□□□□ -0.29
SYNPO-202ENST00000394243 DCTPP1Q9H773 170 aa13.23□□□□□ -0.29
SYNPO-202ENST00000394243 GPTP24298 496 aa13.23□□□□□ -0.29
SYNPO-202ENST00000394243 ZBTB3Q9H5J0 574 aa13.23□□□□□ -0.29
SYNPO-202ENST00000394243 E2F5Q15329 346 aa13.23□□□□□ -0.29
SYNPO-202ENST00000394243 FAM71BQ8TC56 605 aa13.23□□□□□ -0.29
SYNPO-202ENST00000394243 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.23□□□□□ -0.29
SYNPO-202ENST00000394243 TSPY3P0CV98 308 aa13.23□□□□□ -0.29
SYNPO-202ENST00000394243 TSPY8P0CW00 308 aa13.23□□□□□ -0.29
SYNPO-202ENST00000394243 CABP5Q9NP86 173 aa13.23□□□□□ -0.29
SYNPO-202ENST00000394243 ANXA1P04083 346 aa13.22□□□□□ -0.29
SYNPO-202ENST00000394243 KCNH3Q9ULD8 1083 aa13.22□□□□□ -0.29
SYNPO-202ENST00000394243 ZNF652Q9Y2D9 606 aa13.22□□□□□ -0.29
SYNPO-202ENST00000394243 FANCD2Q9BXW9 1451 aa13.22□□□□□ -0.29
SYNPO-202ENST00000394243 TRAF5O00463 557 aa13.22□□□□□ -0.29
SYNPO-202ENST00000394243 ASIC3Q9UHC3 531 aa13.22□□□□□ -0.29
SYNPO-202ENST00000394243 SAR1BQ9Y6B6 198 aa13.22□□□□□ -0.29
SYNPO-202ENST00000394243 POLR2DO15514 142 aaKnown RBP13.22□□□□□ -0.29
SYNPO-202ENST00000394243 ADKP55263 362 aaKnown RBP13.22□□□□□ -0.29
SYNPO-202ENST00000394243 ASIC2Q16515 512 aa13.22□□□□□ -0.29
SYNPO-202ENST00000394243 EFCAB13Q8IY85 973 aa13.22□□□□□ -0.29
SYNPO-202ENST00000394243 IMPG2Q9BZV3 1241 aa13.22□□□□□ -0.29
SYNPO-202ENST00000394243 XPO4Q9C0E2 1151 aaKnown RBP13.22□□□□□ -0.29
SYNPO-202ENST00000394243 RGS16O15492 202 aaPredicted RBP13.22□□□□□ -0.29
SYNPO-202ENST00000394243 KRT15P19012 456 aa13.22□□□□□ -0.29
SYNPO-202ENST00000394243 CTNNA1P35221 906 aaKnown RBP13.22□□□□□ -0.29
SYNPO-202ENST00000394243 AKNAD1Q5T1N1 836 aa13.22□□□□□ -0.29
SYNPO-202ENST00000394243 RILPQ96NA2 401 aa13.22□□□□□ -0.29
SYNPO-202ENST00000394243 JRKLQ9Y4A0 524 aa13.22□□□□□ -0.29
SYNPO-202ENST00000394243 I3L4J1 428 aa13.22□□□□□ -0.29
SYNPO-202ENST00000394243 GPIHBP1Q8IV16 184 aa13.22□□□□□ -0.29
SYNPO-202ENST00000394243 UBL4BQ8N7F7 174 aa13.22□□□□□ -0.29
SYNPO-202ENST00000394243 TNFAIP3P21580 790 aa13.21□□□□□ -0.29
SYNPO-202ENST00000394243 CALML3P27482 149 aa13.21□□□□□ -0.29
SYNPO-202ENST00000394243 STX2P32856 288 aa13.21□□□□□ -0.29
SYNPO-202ENST00000394243 HS2ST1Q7LGA3 356 aa13.21□□□□□ -0.29
SYNPO-202ENST00000394243 SLF2Q8IX21 1173 aa13.21□□□□□ -0.29
SYNPO-202ENST00000394243 KLHL14Q9P2G3 628 aa13.21□□□□□ -0.29
SYNPO-202ENST00000394243 AGTPBP1Q9UPW5 1226 aa13.21□□□□□ -0.29
SYNPO-202ENST00000394243 ZNF202O95125 648 aa13.21□□□□□ -0.29
SYNPO-202ENST00000394243 VWA3BQ502W6 1294 aa13.21□□□□□ -0.29
SYNPO-202ENST00000394243 CRNKL1Q9BZJ0 848 aaKnown RBP13.21□□□□□ -0.29
SYNPO-202ENST00000394243 ZNF174Q15697 407 aa13.21□□□□□ -0.29
SYNPO-202ENST00000394243 JPH2Q9BR39 696 aaPredicted RBP13.21□□□□□ -0.29
SYNPO-202ENST00000394243 EFCC1Q9HA90 598 aa13.21□□□□□ -0.29
SYNPO-202ENST00000394243 PFDN4Q9NQP4 134 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms