RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 UBE3CQ15386 1083 aa11.53□□□□□ -0.56
COL17A1-203ENST00000393211 ALX1Q15699 326 aa11.53□□□□□ -0.56
COL17A1-203ENST00000393211 SYT10Q6XYQ8 523 aa11.53□□□□□ -0.56
COL17A1-203ENST00000393211 ZNF771Q7L3S4 317 aaPredicted RBP11.53□□□□□ -0.56
COL17A1-203ENST00000393211 VSTM4Q8IW00 320 aa11.53□□□□□ -0.56
COL17A1-203ENST00000393211 WASF1Q92558 559 aa11.53□□□□□ -0.56
COL17A1-203ENST00000393211 ERCC4Q92889 916 aaPredicted RBP11.53□□□□□ -0.56
COL17A1-203ENST00000393211 PUS3Q9BZE2 481 aaKnown RBP11.53□□□□□ -0.56
COL17A1-203ENST00000393211 HSD3B7Q9H2F3 369 aa11.53□□□□□ -0.56
COL17A1-203ENST00000393211 GPHNQ9NQX3 736 aaPredicted RBP11.53□□□□□ -0.56
COL17A1-203ENST00000393211 ARGLU1Q9NWB6 273 aaPredicted RBP11.53□□□□□ -0.56
COL17A1-203ENST00000393211 CDHR2Q9BYE9 1310 aa11.52□□□□□ -0.57
COL17A1-203ENST00000393211 ARHGAP6O43182 974 aa11.52□□□□□ -0.57
COL17A1-203ENST00000393211 ATF3P18847 181 aa11.52□□□□□ -0.57
COL17A1-203ENST00000393211 ZAP70P43403 619 aa11.52□□□□□ -0.57
COL17A1-203ENST00000393211 HAND2P61296 217 aa11.52□□□□□ -0.57
COL17A1-203ENST00000393211 TRIM29Q14134 588 aa11.52□□□□□ -0.57
COL17A1-203ENST00000393211 CCDC102BQ68D86 513 aa11.52□□□□□ -0.57
COL17A1-203ENST00000393211 KRT40Q6A162 431 aa11.52□□□□□ -0.57
COL17A1-203ENST00000393211 SGMS1Q86VZ5 419 aa11.52□□□□□ -0.57
COL17A1-203ENST00000393211 VPS37DQ86XT2 251 aa11.52□□□□□ -0.57
COL17A1-203ENST00000393211 ZCRB1Q8TBF4 217 aaKnown RBP11.52□□□□□ -0.57
COL17A1-203ENST00000393211 MAP3K14Q99558 947 aa11.52□□□□□ -0.57
COL17A1-203ENST00000393211 TEX13AQ9BXU3 409 aaPredicted RBP11.52□□□□□ -0.57
COL17A1-203ENST00000393211 PUS7LQ9H0K6 701 aaKnown RBP11.52□□□□□ -0.57
COL17A1-203ENST00000393211 DACH1Q9UI36 760 aa11.52□□□□□ -0.57
COL17A1-203ENST00000393211 NID2Q14112 1375 aa11.52□□□□□ -0.57
COL17A1-203ENST00000393211 MROH7-TTC4A0A0A0MT08 1334 aa11.51□□□□□ -0.57
COL17A1-203ENST00000393211 BIN1O00499 593 aa11.51□□□□□ -0.57
COL17A1-203ENST00000393211 SERPINC1P01008 464 aa11.51□□□□□ -0.57
COL17A1-203ENST00000393211 A1BGP04217 495 aa11.51□□□□□ -0.57
COL17A1-203ENST00000393211 LMOD1P29536 600 aaPredicted RBP11.51□□□□□ -0.57
COL17A1-203ENST00000393211 ADORA1P30542 326 aa11.51□□□□□ -0.57
COL17A1-203ENST00000393211 ADD2P35612 726 aa11.51□□□□□ -0.57
COL17A1-203ENST00000393211 LIFRP42702 1097 aa11.51□□□□□ -0.57
COL17A1-203ENST00000393211 IFIT5Q13325 482 aaKnown RBP11.51□□□□□ -0.57
COL17A1-203ENST00000393211 CT47A1Q5JQC4 288 aaPredicted RBP11.51□□□□□ -0.57
COL17A1-203ENST00000393211 SHC4Q6S5L8 630 aa11.51□□□□□ -0.57
COL17A1-203ENST00000393211 KRBA2Q6ZNG9 492 aa11.51□□□□□ -0.57
COL17A1-203ENST00000393211 HOMER1Q86YM7 354 aa11.51□□□□□ -0.57
COL17A1-203ENST00000393211 ZBTB38Q8NAP3 1195 aaPredicted RBP11.51□□□□□ -0.57
COL17A1-203ENST00000393211 MPHOSPH8Q99549 860 aa11.51□□□□□ -0.57
COL17A1-203ENST00000393211 MTA3Q9BTC8 594 aa11.51□□□□□ -0.57
COL17A1-203ENST00000393211 ZBTB3Q9H5J0 574 aa11.51□□□□□ -0.57
COL17A1-203ENST00000393211 DNAI1Q9UI46 699 aa11.51□□□□□ -0.57
COL17A1-203ENST00000393211 CCDC66A2RUB6 948 aa11.5□□□□□ -0.57
COL17A1-203ENST00000393211 EFCAB8A8MWE9 144 aa11.5□□□□□ -0.57
COL17A1-203ENST00000393211 TOP1P11387 765 aaKnown RBP11.5□□□□□ -0.57
COL17A1-203ENST00000393211 IARSP41252 1262 aaKnown RBP11.5□□□□□ -0.57
COL17A1-203ENST00000393211 GNL2Q13823 731 aaKnown RBP11.5□□□□□ -0.57
COL17A1-203ENST00000393211 TAF7LQ5H9L4 462 aa11.5□□□□□ -0.57
COL17A1-203ENST00000393211 TRIM65Q6PJ69 517 aa11.5□□□□□ -0.57
COL17A1-203ENST00000393211 APOA5Q6Q788 366 aa11.5□□□□□ -0.57
COL17A1-203ENST00000393211 TRIML1Q8N9V2 468 aa11.5□□□□□ -0.57
COL17A1-203ENST00000393211 FBXW7Q969H0 707 aa11.5□□□□□ -0.57
COL17A1-203ENST00000393211 BCL11BQ9C0K0 894 aaPredicted RBP11.5□□□□□ -0.57
COL17A1-203ENST00000393211 AKAP11Q9UKA4 1901 aa11.5□□□□□ -0.57
COL17A1-203ENST00000393211 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.49□□□□□ -0.57
COL17A1-203ENST00000393211 ZBTB43O43298 467 aa11.49□□□□□ -0.57
COL17A1-203ENST00000393211 STX10O60499 249 aa11.49□□□□□ -0.57
COL17A1-203ENST00000393211 UQCRFS1P1P0C7P4 283 aa11.49□□□□□ -0.57
COL17A1-203ENST00000393211 RCAN1P53805 252 aa11.49□□□□□ -0.57
COL17A1-203ENST00000393211 TBX2Q13207 712 aaPredicted RBP11.49□□□□□ -0.57
COL17A1-203ENST00000393211 NTRK3Q16288 839 aa11.49□□□□□ -0.57
COL17A1-203ENST00000393211 ERCC6LQ2NKX8 1250 aa11.49□□□□□ -0.57
COL17A1-203ENST00000393211 CFAP100Q494V2 611 aa11.49□□□□□ -0.57
COL17A1-203ENST00000393211 NT5DC1Q5TFE4 455 aa11.49□□□□□ -0.57
COL17A1-203ENST00000393211 KANK3Q6NY19 840 aa11.49□□□□□ -0.57
COL17A1-203ENST00000393211 REXO1L1PQ8IX06 675 aa11.49□□□□□ -0.57
COL17A1-203ENST00000393211 KRI1Q8N9T8 703 aaKnown RBP11.49□□□□□ -0.57
COL17A1-203ENST00000393211 ZNF579Q8NAF0 562 aaKnown RBP11.49□□□□□ -0.57
COL17A1-203ENST00000393211 MLKLQ8NB16 471 aa11.49□□□□□ -0.57
COL17A1-203ENST00000393211 UBXN4Q92575 508 aa11.49□□□□□ -0.57
COL17A1-203ENST00000393211 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.49□□□□□ -0.57
COL17A1-203ENST00000393211 NBPF3Q9H094 633 aa11.49□□□□□ -0.57
COL17A1-203ENST00000393211 RIPOR2Q9Y4F9 1068 aa11.49□□□□□ -0.57
COL17A1-203ENST00000393211 RIC1Q4ADV7 1423 aa11.49□□□□□ -0.57
COL17A1-203ENST00000393211 SPATA31A3Q5VYP0 1347 aa11.49□□□□□ -0.57
COL17A1-203ENST00000393211 WDR17Q8IZU2 1322 aa11.49□□□□□ -0.57
COL17A1-203ENST00000393211 ECM29Q5VYK3 1845 aa11.49□□□□□ -0.57
COL17A1-203ENST00000393211 LRP6O75581 1613 aa11.49□□□□□ -0.57
COL17A1-203ENST00000393211 PPFIA3O75145 1194 aa11.49□□□□□ -0.57
COL17A1-203ENST00000393211 MARCKSP29966 332 aaPredicted RBP11.49□□□□□ -0.57
COL17A1-203ENST00000393211 SCARF1Q14162 830 aa11.49□□□□□ -0.57
COL17A1-203ENST00000393211 KIF6Q6ZMV9 814 aa11.49□□□□□ -0.57
COL17A1-203ENST00000393211 CNNM3Q8NE01 707 aa11.49□□□□□ -0.57
COL17A1-203ENST00000393211 MNS1Q8NEH6 495 aa11.49□□□□□ -0.57
COL17A1-203ENST00000393211 ENOX1Q8TC92 643 aaKnown RBP11.49□□□□□ -0.57
COL17A1-203ENST00000393211 IGDCC4Q8TDY8 1250 aa11.49□□□□□ -0.57
COL17A1-203ENST00000393211 CNNM2Q9H8M5 875 aa11.49□□□□□ -0.57
COL17A1-203ENST00000393211 ZNF446Q9NWS9 450 aa11.49□□□□□ -0.57
COL17A1-203ENST00000393211 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.49□□□□□ -0.57
COL17A1-203ENST00000393211 KCNH3Q9ULD8 1083 aa11.49□□□□□ -0.57
COL17A1-203ENST00000393211 TBC1D2BQ9UPU7 963 aa11.49□□□□□ -0.57
COL17A1-203ENST00000393211 V9GYY5 206 aaPredicted RBP11.49□□□□□ -0.57
COL17A1-203ENST00000393211 ZRANB2O95218 330 aaKnown RBP eCLIP11.48□□□□□ -0.57
COL17A1-203ENST00000393211 FMNL1O95466 1100 aaPredicted RBP11.48□□□□□ -0.57
COL17A1-203ENST00000393211 ATP1A3P13637 1013 aa11.48□□□□□ -0.57
COL17A1-203ENST00000393211 MCAMP43121 646 aa11.48□□□□□ -0.57
COL17A1-203ENST00000393211 CLCN6P51797 869 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms