RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 ABT1Q9ULW3 272 aaKnown RBP12.02□□□□□ -0.48
COL6A3-205ENST00000392004 IBTKQ9P2D0 1353 aaPredicted RBP12.02□□□□□ -0.48
COL6A3-205ENST00000392004 PRC1O43663 620 aa12.02□□□□□ -0.49
COL6A3-205ENST00000392004 CMTR1Q8N1G2 835 aaKnown RBP12.02□□□□□ -0.49
COL6A3-205ENST00000392004 CSRNP1Q96S65 589 aa12.02□□□□□ -0.49
COL6A3-205ENST00000392004 HOMER2Q9NSB8 354 aa12.02□□□□□ -0.49
COL6A3-205ENST00000392004 SRGNP10124 158 aa12.02□□□□□ -0.49
COL6A3-205ENST00000392004 ZNF76P36508 570 aa12.02□□□□□ -0.49
COL6A3-205ENST00000392004 MECOMQ03112 1051 aa12.02□□□□□ -0.49
COL6A3-205ENST00000392004 APOBRQ0VD83 1088 aa12.02□□□□□ -0.49
COL6A3-205ENST00000392004 SLC26A6Q9BXS9 759 aa12.02□□□□□ -0.49
COL6A3-205ENST00000392004 PUS7LQ9H0K6 701 aaKnown RBP12.02□□□□□ -0.49
COL6A3-205ENST00000392004 INCENPQ9NQS7 918 aa12.02□□□□□ -0.49
COL6A3-205ENST00000392004 COL3A1P02461 1466 aaPredicted RBP12.02□□□□□ -0.49
COL6A3-205ENST00000392004 ABCC12Q96J65 1359 aa12.02□□□□□ -0.49
COL6A3-205ENST00000392004 PIK3C2AO00443 1686 aa12.02□□□□□ -0.49
COL6A3-205ENST00000392004 WDHD1O75717 1129 aaPredicted RBP12.02□□□□□ -0.49
COL6A3-205ENST00000392004 PTH1RQ03431 593 aa12.02□□□□□ -0.49
COL6A3-205ENST00000392004 CREB3L3Q68CJ9 461 aa12.02□□□□□ -0.49
COL6A3-205ENST00000392004 MAP7D2Q96T17 732 aa12.02□□□□□ -0.49
COL6A3-205ENST00000392004 KCNQ5Q9NR82 932 aa12.02□□□□□ -0.49
COL6A3-205ENST00000392004 PICK1Q9NRD5 415 aa12.02□□□□□ -0.49
COL6A3-205ENST00000392004 SEC63Q9UGP8 760 aaKnown RBP12.02□□□□□ -0.49
COL6A3-205ENST00000392004 PES1O00541 588 aaKnown RBP12.01□□□□□ -0.49
COL6A3-205ENST00000392004 CFAP100Q494V2 611 aa12.01□□□□□ -0.49
COL6A3-205ENST00000392004 C9orf131Q5VYM1 1079 aa12.01□□□□□ -0.49
COL6A3-205ENST00000392004 Q6ZUG5 572 aa12.01□□□□□ -0.49
COL6A3-205ENST00000392004 DYNLL2Q96FJ2 89 aa12.01□□□□□ -0.49
COL6A3-205ENST00000392004 IFT172Q9UG01 1749 aa12.01□□□□□ -0.49
COL6A3-205ENST00000392004 ATP6V0A2Q9Y487 856 aa12.01□□□□□ -0.49
COL6A3-205ENST00000392004 RIPOR2Q9Y4F9 1068 aa12.01□□□□□ -0.49
COL6A3-205ENST00000392004 MCM5P33992 734 aa12.01□□□□□ -0.49
COL6A3-205ENST00000392004 TFAP4Q01664 338 aa12.01□□□□□ -0.49
COL6A3-205ENST00000392004 ZNF589Q86UQ0 364 aaPredicted RBP12.01□□□□□ -0.49
COL6A3-205ENST00000392004 LCORLQ8N3X6 602 aa12.01□□□□□ -0.49
COL6A3-205ENST00000392004 BRMS1Q9HCU9 246 aa12.01□□□□□ -0.49
COL6A3-205ENST00000392004 FAM13BQ9NYF5 915 aa12.01□□□□□ -0.49
COL6A3-205ENST00000392004 R3HCC1Q9Y3T6 440 aaKnown RBP12.01□□□□□ -0.49
COL6A3-205ENST00000392004 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.01□□□□□ -0.49
COL6A3-205ENST00000392004 DDNO94850 711 aaPredicted RBP12□□□□□ -0.49
COL6A3-205ENST00000392004 CYP2E1P05181 493 aaPredicted RBP12□□□□□ -0.49
COL6A3-205ENST00000392004 SSBP05455 408 aaKnown RBP eCLIP12□□□□□ -0.49
COL6A3-205ENST00000392004 RBM10P98175 930 aaKnown RBP12□□□□□ -0.49
COL6A3-205ENST00000392004 ATG9AQ7Z3C6 839 aa12□□□□□ -0.49
COL6A3-205ENST00000392004 POLLQ9UGP5 575 aa12□□□□□ -0.49
COL6A3-205ENST00000392004 BRPF1P55201 1214 aaPredicted RBP12□□□□□ -0.49
COL6A3-205ENST00000392004 DHX8Q14562 1220 aaKnown RBP12□□□□□ -0.49
COL6A3-205ENST00000392004 OSBP2Q969R2 916 aa12□□□□□ -0.49
COL6A3-205ENST00000392004 TANGO6Q9C0B7 1094 aa12□□□□□ -0.49
COL6A3-205ENST00000392004 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12□□□□□ -0.49
COL6A3-205ENST00000392004 NCOA5Q9HCD5 579 aaKnown RBP12□□□□□ -0.49
COL6A3-205ENST00000392004 KIF1AQ12756 1690 aa12□□□□□ -0.49
COL6A3-205ENST00000392004 OFD1O75665 1012 aa12□□□□□ -0.49
COL6A3-205ENST00000392004 SP4Q02446 784 aa12□□□□□ -0.49
COL6A3-205ENST00000392004 SF3B3Q15393 1217 aaKnown RBP12□□□□□ -0.49
COL6A3-205ENST00000392004 SP8Q8IXZ3 490 aa12□□□□□ -0.49
COL6A3-205ENST00000392004 HAUS7Q99871 368 aa12□□□□□ -0.49
COL6A3-205ENST00000392004 ZHX3Q9H4I2 956 aa12□□□□□ -0.49
COL6A3-205ENST00000392004 CLIP2Q9UDT6 1046 aa12□□□□□ -0.49
COL6A3-205ENST00000392004 METAP2P50579 478 aaKnown RBP eCLIP11.99□□□□□ -0.49
COL6A3-205ENST00000392004 COA1Q9GZY4 146 aa11.99□□□□□ -0.49
COL6A3-205ENST00000392004 USP32Q8NFA0 1604 aa11.99□□□□□ -0.49
COL6A3-205ENST00000392004 CIAO1O76071 339 aa11.99□□□□□ -0.49
COL6A3-205ENST00000392004 LRRC47Q8N1G4 583 aaKnown RBP11.99□□□□□ -0.49
COL6A3-205ENST00000392004 SLC44A5Q8NCS7 719 aa11.99□□□□□ -0.49
COL6A3-205ENST00000392004 CNOT7Q9UIV1 285 aaKnown RBP11.99□□□□□ -0.49
COL6A3-205ENST00000392004 FGAP02671 866 aa11.99□□□□□ -0.49
COL6A3-205ENST00000392004 IARSP41252 1262 aaKnown RBP11.99□□□□□ -0.49
COL6A3-205ENST00000392004 POLA2Q14181 598 aa11.99□□□□□ -0.49
COL6A3-205ENST00000392004 MICALL2Q8IY33 904 aa11.99□□□□□ -0.49
COL6A3-205ENST00000392004 GOLGA8HP0CJ92 632 aa11.98□□□□□ -0.49
COL6A3-205ENST00000392004 CYP2D6P10635 497 aa11.98□□□□□ -0.49
COL6A3-205ENST00000392004 KLHL40Q2TBA0 621 aa11.98□□□□□ -0.49
COL6A3-205ENST00000392004 PAGR1Q9BTK6 254 aa11.98□□□□□ -0.49
COL6A3-205ENST00000392004 NUCB2P80303 420 aa11.98□□□□□ -0.49
COL6A3-205ENST00000392004 HEATR3Q7Z4Q2 680 aa11.98□□□□□ -0.49
COL6A3-205ENST00000392004 PPP1R9BQ96SB3 815 aa11.98□□□□□ -0.49
COL6A3-205ENST00000392004 SYT17Q9BSW7 474 aa11.98□□□□□ -0.49
COL6A3-205ENST00000392004 BIN2Q9UBW5 565 aaPredicted RBP11.98□□□□□ -0.49
COL6A3-205ENST00000392004 STRCQ7RTU9 1775 aa11.98□□□□□ -0.49
COL6A3-205ENST00000392004 NFAT5O94916 1531 aa11.98□□□□□ -0.49
COL6A3-205ENST00000392004 PSMD14O00487 310 aa11.98□□□□□ -0.49
COL6A3-205ENST00000392004 ZBTB43O43298 467 aa11.98□□□□□ -0.49
COL6A3-205ENST00000392004 ANKRD1Q15327 319 aa11.98□□□□□ -0.49
COL6A3-205ENST00000392004 CC2D2BQ6DHV5 1058 aa11.98□□□□□ -0.49
COL6A3-205ENST00000392004 CCDC84Q86UT8 332 aaPredicted RBP11.98□□□□□ -0.49
COL6A3-205ENST00000392004 GDPD2Q9HCC8 539 aa11.98□□□□□ -0.49
COL6A3-205ENST00000392004 CDHR2Q9BYE9 1310 aa11.98□□□□□ -0.49
COL6A3-205ENST00000392004 SLIT2O94813 1529 aa11.98□□□□□ -0.49
COL6A3-205ENST00000392004 PPP1R12BO60237 982 aaPredicted RBP11.97□□□□□ -0.49
COL6A3-205ENST00000392004 PTMAP06454 111 aaKnown RBP11.97□□□□□ -0.49
COL6A3-205ENST00000392004 NLRP5P59047 1200 aa11.97□□□□□ -0.49
COL6A3-205ENST00000392004 CAVIN1Q6NZI2 390 aaKnown RBP11.97□□□□□ -0.49
COL6A3-205ENST00000392004 IFNL3Q8IZI9 196 aa11.97□□□□□ -0.49
COL6A3-205ENST00000392004 GPBP1L1Q9HC44 474 aaPredicted RBP11.97□□□□□ -0.49
COL6A3-205ENST00000392004 TFIP11Q9UBB9 837 aaKnown RBP11.97□□□□□ -0.49
COL6A3-205ENST00000392004 ORC3Q9UBD5 711 aaPredicted RBP11.97□□□□□ -0.49
COL6A3-205ENST00000392004 TRIM75PA6NK02 468 aa11.97□□□□□ -0.49
COL6A3-205ENST00000392004 PODNQ7Z5L7 613 aa11.97□□□□□ -0.49
COL6A3-205ENST00000392004 CSADQ9Y600 493 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms