RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 PIH1D3Q9NQM4 214 aaKnown RBP11.2□□□□□ -0.62
COL6A3-204ENST00000392003 BECN2A8MW95 431 aa11.2□□□□□ -0.62
COL6A3-204ENST00000392003 BRAPQ7Z569 592 aa11.2□□□□□ -0.62
COL6A3-204ENST00000392003 SDF4Q9BRK5 362 aa11.2□□□□□ -0.62
COL6A3-204ENST00000392003 DNAJC25Q9H1X3 360 aa11.2□□□□□ -0.62
COL6A3-204ENST00000392003 ARID4AP29374 1257 aaPredicted RBP11.19□□□□□ -0.62
COL6A3-204ENST00000392003 FAM160A1Q05DH4 1040 aa11.19□□□□□ -0.62
COL6A3-204ENST00000392003 NOLC1Q14978 699 aaKnown RBP eCLIP11.19□□□□□ -0.62
COL6A3-204ENST00000392003 STX1AQ16623 288 aa11.19□□□□□ -0.62
COL6A3-204ENST00000392003 RAB11FIP4Q86YS3 637 aa11.19□□□□□ -0.62
COL6A3-204ENST00000392003 PLCD4Q9BRC7 762 aa11.19□□□□□ -0.62
COL6A3-204ENST00000392003 NAPBQ9H115 298 aa11.19□□□□□ -0.62
COL6A3-204ENST00000392003 ANGEL1Q9UNK9 670 aaKnown RBP11.19□□□□□ -0.62
COL6A3-204ENST00000392003 ITGB4P16144 1822 aa11.19□□□□□ -0.62
COL6A3-204ENST00000392003 ADD1P35611 737 aaKnown RBP11.19□□□□□ -0.62
COL6A3-204ENST00000392003 METAP2P50579 478 aaKnown RBP eCLIP11.19□□□□□ -0.62
COL6A3-204ENST00000392003 VGLL2Q8N8G2 317 aa11.19□□□□□ -0.62
COL6A3-204ENST00000392003 KCNG4Q8TDN1 519 aa11.19□□□□□ -0.62
COL6A3-204ENST00000392003 MRPS27Q92552 414 aaKnown RBP11.19□□□□□ -0.62
COL6A3-204ENST00000392003 AHDC1Q5TGY3 1603 aaPredicted RBP11.19□□□□□ -0.62
COL6A3-204ENST00000392003 POLR3DP05423 398 aaPredicted RBP11.19□□□□□ -0.62
COL6A3-204ENST00000392003 SEMA3FQ13275 785 aa11.19□□□□□ -0.62
COL6A3-204ENST00000392003 TRIM29Q14134 588 aa11.19□□□□□ -0.62
COL6A3-204ENST00000392003 SPATA5Q8NB90 893 aa11.19□□□□□ -0.62
COL6A3-204ENST00000392003 FBXO18Q8NFZ0 1043 aa11.19□□□□□ -0.62
COL6A3-204ENST00000392003 FTOQ9C0B1 505 aaKnown RBP eCLIP11.19□□□□□ -0.62
COL6A3-204ENST00000392003 ANO10Q9NW15 660 aa11.19□□□□□ -0.62
COL6A3-204ENST00000392003 RTEL1Q9NZ71 1219 aa11.19□□□□□ -0.62
COL6A3-204ENST00000392003 FOXP2O15409 715 aa11.18□□□□□ -0.62
COL6A3-204ENST00000392003 FDPSP14324 419 aaKnown RBP11.18□□□□□ -0.62
COL6A3-204ENST00000392003 VPS37DQ86XT2 251 aa11.18□□□□□ -0.62
COL6A3-204ENST00000392003 TMEM87BQ96K49 555 aa11.18□□□□□ -0.62
COL6A3-204ENST00000392003 NACAP1Q9BZK3 213 aa11.18□□□□□ -0.62
COL6A3-204ENST00000392003 CCNL1Q9UK58 526 aaPredicted RBP11.18□□□□□ -0.62
COL6A3-204ENST00000392003 UBN2Q6ZU65 1347 aa11.18□□□□□ -0.62
COL6A3-204ENST00000392003 GNPATO15228 680 aa11.18□□□□□ -0.62
COL6A3-204ENST00000392003 ANTXR2P58335 489 aa11.18□□□□□ -0.62
COL6A3-204ENST00000392003 OTUD7BQ6GQQ9 843 aa11.18□□□□□ -0.62
COL6A3-204ENST00000392003 TDRD7Q8NHU6 1098 aaKnown RBP11.18□□□□□ -0.62
COL6A3-204ENST00000392003 CDC5LQ99459 802 aaKnown RBP11.18□□□□□ -0.62
COL6A3-204ENST00000392003 NAT10Q9H0A0 1025 aaKnown RBP11.18□□□□□ -0.62
COL6A3-204ENST00000392003 SEC31BQ9NQW1 1179 aa11.18□□□□□ -0.62
COL6A3-204ENST00000392003 WWC3Q9ULE0 1092 aa11.18□□□□□ -0.62
COL6A3-204ENST00000392003 LRP6O75581 1613 aa11.18□□□□□ -0.62
COL6A3-204ENST00000392003 YEATS4O95619 227 aa11.18□□□□□ -0.62
COL6A3-204ENST00000392003 ZNF771Q7L3S4 317 aaPredicted RBP11.18□□□□□ -0.62
COL6A3-204ENST00000392003 MAGEB6Q8N7X4 407 aa11.18□□□□□ -0.62
COL6A3-204ENST00000392003 TOMM22Q9NS69 142 aa11.18□□□□□ -0.62
COL6A3-204ENST00000392003 B4E1Z4 1266 aa11.17□□□□□ -0.62
COL6A3-204ENST00000392003 ADALQ6DHV7 355 aa11.17□□□□□ -0.62
COL6A3-204ENST00000392003 SH3BP1Q9Y3L3 701 aa11.17□□□□□ -0.62
COL6A3-204ENST00000392003 ZMYM6O95789 1325 aa11.17□□□□□ -0.62
COL6A3-204ENST00000392003 SPTLC2O15270 562 aa11.17□□□□□ -0.62
COL6A3-204ENST00000392003 ZBTB43O43298 467 aa11.17□□□□□ -0.62
COL6A3-204ENST00000392003 AP5Z1O43299 807 aa11.17□□□□□ -0.62
COL6A3-204ENST00000392003 CAMTA2O94983 1202 aa11.17□□□□□ -0.62
COL6A3-204ENST00000392003 CHAF1AQ13111 956 aaPredicted RBP11.17□□□□□ -0.62
COL6A3-204ENST00000392003 TMEM67Q5HYA8 995 aa11.17□□□□□ -0.62
COL6A3-204ENST00000392003 TAF3Q5VWG9 929 aa11.17□□□□□ -0.62
COL6A3-204ENST00000392003 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.17□□□□□ -0.62
COL6A3-204ENST00000392003 CEP57L1Q8IYX8 460 aa11.17□□□□□ -0.62
COL6A3-204ENST00000392003 SETDB2Q96T68 719 aa11.17□□□□□ -0.62
COL6A3-204ENST00000392003 ALG1Q9BT22 464 aa11.17□□□□□ -0.62
COL6A3-204ENST00000392003 CNNM2Q9H8M5 875 aa11.17□□□□□ -0.62
COL6A3-204ENST00000392003 CCDC69A6NI79 296 aa11.17□□□□□ -0.62
COL6A3-204ENST00000392003 GOLGA8AA7E2F4 631 aa11.17□□□□□ -0.62
COL6A3-204ENST00000392003 PHLPP1O60346 1717 aa11.17□□□□□ -0.62
COL6A3-204ENST00000392003 MBD4O95243 580 aa11.17□□□□□ -0.62
COL6A3-204ENST00000392003 SART3Q15020 963 aaKnown RBP11.17□□□□□ -0.62
COL6A3-204ENST00000392003 ALX1Q15699 326 aa11.17□□□□□ -0.62
COL6A3-204ENST00000392003 MYSM1Q5VVJ2 828 aa11.17□□□□□ -0.62
COL6A3-204ENST00000392003 NBPF5PQ86XG9 351 aaPredicted RBP11.17□□□□□ -0.62
COL6A3-204ENST00000392003 BANK1Q8NDB2 785 aa11.17□□□□□ -0.62
COL6A3-204ENST00000392003 STRBPQ96SI9 672 aaKnown RBP11.17□□□□□ -0.62
COL6A3-204ENST00000392003 PCDHA7Q9UN72 937 aa11.17□□□□□ -0.62
COL6A3-204ENST00000392003 HPS5Q9UPZ3 1129 aa11.17□□□□□ -0.62
COL6A3-204ENST00000392003 RTCBQ9Y3I0 505 aaKnown RBP11.17□□□□□ -0.62
COL6A3-204ENST00000392003 MYH3P11055 1940 aa11.16□□□□□ -0.62
COL6A3-204ENST00000392003 MYH7P12883 1935 aa11.16□□□□□ -0.62
COL6A3-204ENST00000392003 A0A1W2PQ27 194 aa11.16□□□□□ -0.62
COL6A3-204ENST00000392003 A0A1W2PQ64 194 aa11.16□□□□□ -0.62
COL6A3-204ENST00000392003 A0A1W2PQD8 194 aa11.16□□□□□ -0.62
COL6A3-204ENST00000392003 FGFR2P21802 821 aa11.16□□□□□ -0.62
COL6A3-204ENST00000392003 TDO2P48775 406 aa11.16□□□□□ -0.62
COL6A3-204ENST00000392003 ZNF75DP51815 510 aa11.16□□□□□ -0.62
COL6A3-204ENST00000392003 CT47A1Q5JQC4 288 aaPredicted RBP11.16□□□□□ -0.62
COL6A3-204ENST00000392003 SMIM5Q71RC9 77 aa11.16□□□□□ -0.62
COL6A3-204ENST00000392003 MICU3Q86XE3 530 aa11.16□□□□□ -0.62
COL6A3-204ENST00000392003 TBC1D10CQ8IV04 446 aa11.16□□□□□ -0.62
COL6A3-204ENST00000392003 LRP2BPQ9P2M1 347 aa11.16□□□□□ -0.62
COL6A3-204ENST00000392003 ATRNO75882 1429 aa11.16□□□□□ -0.62
COL6A3-204ENST00000392003 ERICH2A1L162 156 aa11.16□□□□□ -0.62
COL6A3-204ENST00000392003 SH2B2O14492 632 aaPredicted RBP11.16□□□□□ -0.62
COL6A3-204ENST00000392003 IFIT3O14879 490 aaKnown RBP11.16□□□□□ -0.62
COL6A3-204ENST00000392003 GNAT2P19087 354 aa11.16□□□□□ -0.62
COL6A3-204ENST00000392003 IARSP41252 1262 aaKnown RBP11.16□□□□□ -0.62
COL6A3-204ENST00000392003 JMYQ8N9B5 988 aa11.16□□□□□ -0.62
COL6A3-204ENST00000392003 KRT23Q9C075 422 aa11.16□□□□□ -0.62
COL6A3-204ENST00000392003 GOLPH3LQ9H4A5 285 aa11.16□□□□□ -0.62
COL6A3-204ENST00000392003 ANKRD36CQ5JPF3 1778 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms