RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 BCS1LQ9Y276 419 aa14.74□□□□□ -0.05
CIITA-202ENST00000381835 SCN9AQ15858 1988 aa14.73□□□□□ -0.05
CIITA-202ENST00000381835 PRKAB2O43741 272 aa14.73□□□□□ -0.05
CIITA-202ENST00000381835 CASTP20810 708 aaKnown RBP14.73□□□□□ -0.05
CIITA-202ENST00000381835 DYNLL1P63167 89 aaKnown RBP14.73□□□□□ -0.05
CIITA-202ENST00000381835 DIXDC1Q155Q3 683 aa14.73□□□□□ -0.05
CIITA-202ENST00000381835 MCTP1Q6DN14 999 aa14.73□□□□□ -0.05
CIITA-202ENST00000381835 NLGN2Q8NFZ4 835 aa14.73□□□□□ -0.05
CIITA-202ENST00000381835 IL17RAQ96F46 866 aa14.73□□□□□ -0.05
CIITA-202ENST00000381835 ST18O60284 1047 aa14.72□□□□□ -0.05
CIITA-202ENST00000381835 SOGA3Q5TF21 947 aa14.72□□□□□ -0.05
CIITA-202ENST00000381835 PSMD1Q99460 953 aa14.72□□□□□ -0.05
CIITA-202ENST00000381835 MXD3Q9BW11 206 aa14.72□□□□□ -0.05
CIITA-202ENST00000381835 AATFQ9NY61 560 aaKnown RBP eCLIP14.72□□□□□ -0.05
CIITA-202ENST00000381835 SLC4A4Q9Y6R1 1079 aa14.72□□□□□ -0.05
CIITA-202ENST00000381835 PATL2C9JE40 543 aaKnown RBP14.72□□□□□ -0.05
CIITA-202ENST00000381835 CPA1P15085 419 aa14.72□□□□□ -0.05
CIITA-202ENST00000381835 RIOK1Q9BRS2 568 aaKnown RBP14.72□□□□□ -0.05
CIITA-202ENST00000381835 ZNF277Q9NRM2 450 aaPredicted RBP14.72□□□□□ -0.05
CIITA-202ENST00000381835 CTNNA3Q9UI47 895 aa14.72□□□□□ -0.05
CIITA-202ENST00000381835 F8W031 263 aaPredicted RBP14.71□□□□□ -0.05
CIITA-202ENST00000381835 NCLP19338 710 aaKnown RBP14.71□□□□□ -0.05
CIITA-202ENST00000381835 HAND2P61296 217 aa14.71□□□□□ -0.05
CIITA-202ENST00000381835 PPP1R9BQ96SB3 815 aa14.71□□□□□ -0.05
CIITA-202ENST00000381835 GNAT2P19087 354 aa14.71□□□□□ -0.05
CIITA-202ENST00000381835 GSTO1P78417 241 aa14.71□□□□□ -0.05
CIITA-202ENST00000381835 HSP90AA2PQ14568 343 aaPredicted RBP14.71□□□□□ -0.05
CIITA-202ENST00000381835 IMMTQ16891 758 aaKnown RBP14.71□□□□□ -0.05
CIITA-202ENST00000381835 CERS5Q8N5B7 392 aa14.71□□□□□ -0.05
CIITA-202ENST00000381835 SDR42E1Q8WUS8 393 aa14.71□□□□□ -0.05
CIITA-202ENST00000381835 GSG1L2A8MUP6 293 aa14.7□□□□□ -0.06
CIITA-202ENST00000381835 IFNL3Q8IZI9 196 aa14.7□□□□□ -0.06
CIITA-202ENST00000381835 LARGE2Q8N3Y3 721 aa14.7□□□□□ -0.06
CIITA-202ENST00000381835 EPB41L4AQ9HCS5 686 aaPredicted RBP14.7□□□□□ -0.06
CIITA-202ENST00000381835 TSGA10IPQ3SY00 556 aa14.7□□□□□ -0.06
CIITA-202ENST00000381835 TMED8Q6PL24 325 aaPredicted RBP14.7□□□□□ -0.06
CIITA-202ENST00000381835 NOL8Q76FK4 1167 aaKnown RBP14.7□□□□□ -0.06
CIITA-202ENST00000381835 NAPBQ9H115 298 aa14.7□□□□□ -0.06
CIITA-202ENST00000381835 FER1L6Q2WGJ9 1857 aa14.69□□□□□ -0.06
CIITA-202ENST00000381835 BAZ2AQ9UIF9 1905 aaKnown RBP14.69□□□□□ -0.06
CIITA-202ENST00000381835 ZNF213O14771 459 aa14.69□□□□□ -0.06
CIITA-202ENST00000381835 IGSF3O75054 1194 aa14.69□□□□□ -0.06
CIITA-202ENST00000381835 LDHCP07864 332 aa14.69□□□□□ -0.06
CIITA-202ENST00000381835 PSMA5P28066 241 aa14.69□□□□□ -0.06
CIITA-202ENST00000381835 TDO2P48775 406 aa14.69□□□□□ -0.06
CIITA-202ENST00000381835 COL9A3Q14050 684 aaPredicted RBP14.69□□□□□ -0.06
CIITA-202ENST00000381835 KRT32Q14532 448 aa14.69□□□□□ -0.06
CIITA-202ENST00000381835 GLIPR1L2Q4G1C9 344 aa14.69□□□□□ -0.06
CIITA-202ENST00000381835 NACAP1Q9BZK3 213 aa14.69□□□□□ -0.06
CIITA-202ENST00000381835 TM6SF1Q9BZW5 370 aa14.69□□□□□ -0.06
CIITA-202ENST00000381835 CWC22Q9HCG8 908 aaKnown RBP14.69□□□□□ -0.06
CIITA-202ENST00000381835 CYP46A1Q9Y6A2 500 aa14.69□□□□□ -0.06
CIITA-202ENST00000381835 USP17L3A6NCW0 530 aa14.69□□□□□ -0.06
CIITA-202ENST00000381835 USP17L4A6NCW7 530 aa14.69□□□□□ -0.06
CIITA-202ENST00000381835 RRP9O43818 475 aaKnown RBP14.69□□□□□ -0.06
CIITA-202ENST00000381835 STRIP1Q5VSL9 837 aa14.69□□□□□ -0.06
CIITA-202ENST00000381835 CAVIN1Q6NZI2 390 aaKnown RBP14.69□□□□□ -0.06
CIITA-202ENST00000381835 STOX1Q6ZVD7 989 aa14.69□□□□□ -0.06
CIITA-202ENST00000381835 USP17L1Q7RTZ2 530 aa14.69□□□□□ -0.06
CIITA-202ENST00000381835 FHDC1Q9C0D6 1143 aaPredicted RBP14.69□□□□□ -0.06
CIITA-202ENST00000381835 ZSWIM6Q9HCJ5 1215 aa14.69□□□□□ -0.06
CIITA-202ENST00000381835 TTF2Q9UNY4 1162 aaKnown RBP14.69□□□□□ -0.06
CIITA-202ENST00000381835 RPAP1Q9BWH6 1393 aaPredicted RBP14.69□□□□□ -0.06
CIITA-202ENST00000381835 LAMA4Q16363 1823 aa14.69□□□□□ -0.06
CIITA-202ENST00000381835 MROH7-TTC4A0A0A0MT08 1334 aa14.68□□□□□ -0.06
CIITA-202ENST00000381835 YDJCA8MPS7 323 aa14.68□□□□□ -0.06
CIITA-202ENST00000381835 ZNF445P59923 1031 aa14.68□□□□□ -0.06
CIITA-202ENST00000381835 BLOC1S2Q6QNY1 142 aa14.68□□□□□ -0.06
CIITA-202ENST00000381835 RUFY3Q7L099 469 aa14.68□□□□□ -0.06
CIITA-202ENST00000381835 NEK1Q96PY6 1258 aa14.68□□□□□ -0.06
CIITA-202ENST00000381835 NOL10Q9BSC4 688 aaKnown RBP14.68□□□□□ -0.06
CIITA-202ENST00000381835 TAOK3Q9H2K8 898 aa14.68□□□□□ -0.06
CIITA-202ENST00000381835 E7EWF7 191 aa14.67□□□□□ -0.06
CIITA-202ENST00000381835 BAG3O95817 575 aa14.67□□□□□ -0.06
CIITA-202ENST00000381835 ALX1Q15699 326 aa14.67□□□□□ -0.06
CIITA-202ENST00000381835 ZSCAN30Q86W11 494 aa14.67□□□□□ -0.06
CIITA-202ENST00000381835 SLF2Q8IX21 1173 aa14.67□□□□□ -0.06
CIITA-202ENST00000381835 TCEANC2Q96MN5 208 aa14.67□□□□□ -0.06
CIITA-202ENST00000381835 CRNKL1Q9BZJ0 848 aaKnown RBP14.67□□□□□ -0.06
CIITA-202ENST00000381835 LMBRD1Q9NUN5 540 aa14.67□□□□□ -0.06
CIITA-202ENST00000381835 SUGT1Q9Y2Z0 365 aa14.67□□□□□ -0.06
CIITA-202ENST00000381835 IARSP41252 1262 aaKnown RBP14.67□□□□□ -0.06
CIITA-202ENST00000381835 SCNN1DP51172 638 aa14.67□□□□□ -0.06
CIITA-202ENST00000381835 PKP1Q13835 747 aa14.67□□□□□ -0.06
CIITA-202ENST00000381835 DACT2Q5SW24 774 aa14.67□□□□□ -0.06
CIITA-202ENST00000381835 KIAA0825Q8IV33 1275 aa14.67□□□□□ -0.06
CIITA-202ENST00000381835 PDRG1Q9NUG6 133 aa14.67□□□□□ -0.06
CIITA-202ENST00000381835 COL4A5P29400 1685 aa14.66□□□□□ -0.06
CIITA-202ENST00000381835 NFKBIEO00221 500 aa14.66□□□□□ -0.06
CIITA-202ENST00000381835 BTDP43251 543 aa14.66□□□□□ -0.06
CIITA-202ENST00000381835 ZSCAN23Q3MJ62 389 aa14.66□□□□□ -0.06
CIITA-202ENST00000381835 SH3RF3Q8TEJ3 882 aaPredicted RBP14.66□□□□□ -0.06
CIITA-202ENST00000381835 TTC14Q96N46 770 aa14.66□□□□□ -0.06
CIITA-202ENST00000381835 MSNP26038 577 aaKnown RBP14.66□□□□□ -0.06
CIITA-202ENST00000381835 LARP6Q9BRS8 491 aaKnown RBP14.66□□□□□ -0.06
CIITA-202ENST00000381835 VPS33BQ9H267 617 aa14.66□□□□□ -0.06
CIITA-202ENST00000381835 ZNF646O15015 1829 aaPredicted RBP14.65□□□□□ -0.06
CIITA-202ENST00000381835 ARFGEF1Q9Y6D6 1849 aa14.65□□□□□ -0.06
CIITA-202ENST00000381835 ZMYM6O95789 1325 aa14.65□□□□□ -0.06
CIITA-202ENST00000381835 RAD17O75943 681 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms