RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 DCAF17Q5H9S7 520 aaPredicted RBP12.97□□□□□ -0.33
VPS13A-205ENST00000376636 HELBQ8NG08 1087 aaPredicted RBP12.97□□□□□ -0.33
VPS13A-205ENST00000376636 MORC4Q8TE76 937 aa12.97□□□□□ -0.33
VPS13A-205ENST00000376636 THEMISQ8N1K5 641 aaPredicted RBP12.96□□□□□ -0.33
VPS13A-205ENST00000376636 LRRC43Q8N309 656 aa12.96□□□□□ -0.33
VPS13A-205ENST00000376636 NRBF2Q96F24 287 aa12.96□□□□□ -0.33
VPS13A-205ENST00000376636 FAM212AQ96EL1 285 aa12.96□□□□□ -0.33
VPS13A-205ENST00000376636 RAP1GDS1P52306 607 aa12.96□□□□□ -0.33
VPS13A-205ENST00000376636 RAPGEF1Q13905 1077 aa12.96□□□□□ -0.33
VPS13A-205ENST00000376636 SYT10Q6XYQ8 523 aa12.96□□□□□ -0.33
VPS13A-205ENST00000376636 USP48Q86UV5 1035 aa12.96□□□□□ -0.33
VPS13A-205ENST00000376636 STAG1Q8WVM7 1258 aa12.96□□□□□ -0.33
VPS13A-205ENST00000376636 VTI1AQ96AJ9 217 aa12.96□□□□□ -0.33
VPS13A-205ENST00000376636 LRRD1A4D1F6 860 aa12.96□□□□□ -0.33
VPS13A-205ENST00000376636 RRP36Q96EU6 259 aaKnown RBP12.96□□□□□ -0.33
VPS13A-205ENST00000376636 DNAJC25Q9H1X3 360 aa12.96□□□□□ -0.33
VPS13A-205ENST00000376636 TRMT112Q9UI30 125 aaKnown RBP12.96□□□□□ -0.33
VPS13A-205ENST00000376636 BIRC2Q13490 618 aa12.96□□□□□ -0.33
VPS13A-205ENST00000376636 EVI5O60447 810 aa12.96□□□□□ -0.33
VPS13A-205ENST00000376636 KRT15P19012 456 aa12.96□□□□□ -0.33
VPS13A-205ENST00000376636 SMARCA5O60264 1052 aaPredicted RBP12.96□□□□□ -0.34
VPS13A-205ENST00000376636 NSD3Q9BZ95 1437 aa12.96□□□□□ -0.34
VPS13A-205ENST00000376636 DDX21Q9NR30 783 aaKnown RBP eCLIP12.96□□□□□ -0.34
VPS13A-205ENST00000376636 SLFN5Q08AF3 891 aa12.96□□□□□ -0.34
VPS13A-205ENST00000376636 CFAP221Q4G0U5 840 aa12.96□□□□□ -0.34
VPS13A-205ENST00000376636 RNF34Q969K3 372 aa12.96□□□□□ -0.34
VPS13A-205ENST00000376636 KARSQ15046 597 aaKnown RBP12.95□□□□□ -0.34
VPS13A-205ENST00000376636 SPDL1Q96EA4 605 aa12.95□□□□□ -0.34
VPS13A-205ENST00000376636 MYD88Q99836 296 aa12.95□□□□□ -0.34
VPS13A-205ENST00000376636 APOEP02649 317 aa12.95□□□□□ -0.34
VPS13A-205ENST00000376636 IRX5P78411 483 aaPredicted RBP12.95□□□□□ -0.34
VPS13A-205ENST00000376636 RPGRIP1Q96KN7 1286 aa12.95□□□□□ -0.34
VPS13A-205ENST00000376636 TMOD4Q9NZQ9 345 aa12.95□□□□□ -0.34
VPS13A-205ENST00000376636 PPME1Q9Y570 386 aa12.95□□□□□ -0.34
VPS13A-205ENST00000376636 CNNM4Q6P4Q7 775 aa12.95□□□□□ -0.34
VPS13A-205ENST00000376636 DTHD1Q6ZMT9 781 aa12.95□□□□□ -0.34
VPS13A-205ENST00000376636 DBF4Q9UBU7 674 aaPredicted RBP12.95□□□□□ -0.34
VPS13A-205ENST00000376636 STK24Q9Y6E0 443 aa12.95□□□□□ -0.34
VPS13A-205ENST00000376636 PROSER2Q86WR7 435 aaPredicted RBP12.95□□□□□ -0.34
VPS13A-205ENST00000376636 PPP2R5EQ16537 467 aa12.95□□□□□ -0.34
VPS13A-205ENST00000376636 IQUBQ8NA54 791 aa12.95□□□□□ -0.34
VPS13A-205ENST00000376636 FAM71BQ8TC56 605 aa12.95□□□□□ -0.34
VPS13A-205ENST00000376636 FNBP1Q96RU3 617 aa12.95□□□□□ -0.34
VPS13A-205ENST00000376636 ASIC3Q9UHC3 531 aa12.95□□□□□ -0.34
VPS13A-205ENST00000376636 ARHGAP42A6NI28 874 aa12.95□□□□□ -0.34
VPS13A-205ENST00000376636 NUP58Q9BVL2 599 aa12.95□□□□□ -0.34
VPS13A-205ENST00000376636 CASC4Q6P4E1 433 aa12.95□□□□□ -0.34
VPS13A-205ENST00000376636 ESRRGP62508 458 aa12.94□□□□□ -0.34
VPS13A-205ENST00000376636 KMT5BQ4FZB7 885 aa12.94□□□□□ -0.34
VPS13A-205ENST00000376636 TBC1D32Q96NH3 1257 aa12.94□□□□□ -0.34
VPS13A-205ENST00000376636 NAP1L4Q99733 375 aaKnown RBP12.94□□□□□ -0.34
VPS13A-205ENST00000376636 TBC1D8O95759 1140 aa12.94□□□□□ -0.34
VPS13A-205ENST00000376636 CDAN1Q8IWY9 1227 aa12.94□□□□□ -0.34
VPS13A-205ENST00000376636 DACT1Q9NYF0 836 aa12.94□□□□□ -0.34
VPS13A-205ENST00000376636 KLF18A0A0U1RQI7 1052 aa12.94□□□□□ -0.34
VPS13A-205ENST00000376636 RPAINQ86UA6 219 aa12.94□□□□□ -0.34
VPS13A-205ENST00000376636 MAIP1Q8WWC4 291 aa12.94□□□□□ -0.34
VPS13A-205ENST00000376636 CTTNBP2NLQ9P2B4 639 aa12.94□□□□□ -0.34
VPS13A-205ENST00000376636 STK38LQ9Y2H1 464 aa12.94□□□□□ -0.34
VPS13A-205ENST00000376636 HMGB3O15347 200 aaKnown RBP12.94□□□□□ -0.34
VPS13A-205ENST00000376636 CHMP2AO43633 222 aa12.94□□□□□ -0.34
VPS13A-205ENST00000376636 UQCRFS1P1P0C7P4 283 aa12.94□□□□□ -0.34
VPS13A-205ENST00000376636 TTC22Q5TAA0 569 aa12.94□□□□□ -0.34
VPS13A-205ENST00000376636 SCHIP1Q9P0W5 487 aaPredicted RBP12.94□□□□□ -0.34
VPS13A-205ENST00000376636 BAIAP2L1Q9UHR4 511 aa12.94□□□□□ -0.34
VPS13A-205ENST00000376636 ELP1O95163 1332 aa12.94□□□□□ -0.34
VPS13A-205ENST00000376636 CALUO43852 315 aaPredicted RBP12.94□□□□□ -0.34
VPS13A-205ENST00000376636 GNAT2P19087 354 aa12.94□□□□□ -0.34
VPS13A-205ENST00000376636 IQCDQ96DY2 449 aa12.94□□□□□ -0.34
VPS13A-205ENST00000376636 IFNKQ9P0W0 207 aa12.94□□□□□ -0.34
VPS13A-205ENST00000376636 CCDC8Q9H0W5 538 aaPredicted RBP12.93□□□□□ -0.34
VPS13A-205ENST00000376636 PFDN6O15212 129 aa12.93□□□□□ -0.34
VPS13A-205ENST00000376636 MARCKSP29966 332 aaPredicted RBP12.93□□□□□ -0.34
VPS13A-205ENST00000376636 DHX58Q96C10 678 aa12.93□□□□□ -0.34
VPS13A-205ENST00000376636 IMPACTQ9P2X3 320 aa12.93□□□□□ -0.34
VPS13A-205ENST00000376636 NCOA2Q15596 1464 aa12.93□□□□□ -0.34
VPS13A-205ENST00000376636 CABP1Q9NZU7 370 aa12.93□□□□□ -0.34
VPS13A-205ENST00000376636 ANKRD20A4Q4UJ75 823 aa12.93□□□□□ -0.34
VPS13A-205ENST00000376636 ANKRD20A8PQ5CZ79 823 aa12.93□□□□□ -0.34
VPS13A-205ENST00000376636 ANKRD20A2Q5SQ80 823 aa12.93□□□□□ -0.34
VPS13A-205ENST00000376636 ANKRD20A1Q5TYW2 823 aa12.93□□□□□ -0.34
VPS13A-205ENST00000376636 F13A1P00488 732 aa12.93□□□□□ -0.34
VPS13A-205ENST00000376636 CYB5RLQ6IPT4 315 aa12.93□□□□□ -0.34
VPS13A-205ENST00000376636 TRIM6Q9C030 488 aaPredicted RBP12.93□□□□□ -0.34
VPS13A-205ENST00000376636 HOMER3Q9NSC5 361 aa12.93□□□□□ -0.34
VPS13A-205ENST00000376636 MAN1A2O60476 641 aa12.93□□□□□ -0.34
VPS13A-205ENST00000376636 EPRSP07814 1512 aaKnown RBP12.93□□□□□ -0.34
VPS13A-205ENST00000376636 PIK3R4Q99570 1358 aa12.92□□□□□ -0.34
VPS13A-205ENST00000376636 FLOT1O75955 427 aa12.92□□□□□ -0.34
VPS13A-205ENST00000376636 STX2P32856 288 aa12.92□□□□□ -0.34
VPS13A-205ENST00000376636 TMX3Q96JJ7 454 aa12.92□□□□□ -0.34
VPS13A-205ENST00000376636 TTC4O95801 387 aa12.92□□□□□ -0.34
VPS13A-205ENST00000376636 SCINQ9Y6U3 715 aa12.92□□□□□ -0.34
VPS13A-205ENST00000376636 BANK1Q8NDB2 785 aa12.92□□□□□ -0.34
VPS13A-205ENST00000376636 GOLGA8CPA6NN73 597 aa12.92□□□□□ -0.34
VPS13A-205ENST00000376636 SERPINB6P35237 376 aa12.92□□□□□ -0.34
VPS13A-205ENST00000376636 PPP1R42Q7Z4L9 355 aa12.92□□□□□ -0.34
VPS13A-205ENST00000376636 NLRP7Q8WX94 980 aa12.92□□□□□ -0.34
VPS13A-205ENST00000376636 TEX13AQ9BXU3 409 aaPredicted RBP12.92□□□□□ -0.34
VPS13A-205ENST00000376636 NPHP3Q7Z494 1330 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms