RNA–Protein interactions for RNA: ENST00000374949.2

HLA-DQA1-202, Transcript of major histocompatibility complex, class II, DQ alpha 1, humanhuman

APPRIS P1 BASIC

Gene HLA-DQA1, Length 1,060 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1-202ENST00000374949 TNFAIP1Q13829 316 aa13.42□□□□□ -0.26
HLA-DQA1-202ENST00000374949 RABL6Q3YEC7 729 aaPredicted RBP13.42□□□□□ -0.26
HLA-DQA1-202ENST00000374949 OTUD7BQ6GQQ9 843 aa13.42□□□□□ -0.26
HLA-DQA1-202ENST00000374949 ARMC5Q96C12 935 aa13.42□□□□□ -0.26
HLA-DQA1-202ENST00000374949 EFCC1Q9HA90 598 aa13.42□□□□□ -0.26
HLA-DQA1-202ENST00000374949 TESPA1A2RU30 521 aaPredicted RBP13.41□□□□□ -0.26
HLA-DQA1-202ENST00000374949 TCP10L2B9ZVM9 353 aa13.41□□□□□ -0.26
HLA-DQA1-202ENST00000374949 SP3Q02447 781 aa13.41□□□□□ -0.26
HLA-DQA1-202ENST00000374949 VGLL4Q14135 290 aa13.41□□□□□ -0.26
HLA-DQA1-202ENST00000374949 TDRD7Q8NHU6 1098 aaKnown RBP13.41□□□□□ -0.26
HLA-DQA1-202ENST00000374949 BRI3BPQ8WY22 251 aa13.41□□□□□ -0.26
HLA-DQA1-202ENST00000374949 TEPSINQ96N21 525 aa13.41□□□□□ -0.26
HLA-DQA1-202ENST00000374949 LNPKQ9C0E8 428 aa13.41□□□□□ -0.26
HLA-DQA1-202ENST00000374949 TMEM39BQ9GZU3 492 aa13.41□□□□□ -0.26
HLA-DQA1-202ENST00000374949 EXOC6BQ9Y2D4 811 aa13.41□□□□□ -0.26
HLA-DQA1-202ENST00000374949 NOP58Q9Y2X3 529 aaKnown RBP13.41□□□□□ -0.26
HLA-DQA1-202ENST00000374949 CEP290O15078 2479 aa13.41□□□□□ -0.26
HLA-DQA1-202ENST00000374949 APBB1O00213 710 aa13.4□□□□□ -0.26
HLA-DQA1-202ENST00000374949 EN2P19622 333 aaPredicted RBP13.4□□□□□ -0.26
HLA-DQA1-202ENST00000374949 PDE4AP27815 886 aa13.4□□□□□ -0.26
HLA-DQA1-202ENST00000374949 TAF1CQ15572 869 aaPredicted RBP13.4□□□□□ -0.26
HLA-DQA1-202ENST00000374949 GRIK5Q16478 980 aa13.4□□□□□ -0.26
HLA-DQA1-202ENST00000374949 HABP4Q5JVS0 413 aaKnown RBP13.4□□□□□ -0.26
HLA-DQA1-202ENST00000374949 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.4□□□□□ -0.26
HLA-DQA1-202ENST00000374949 OTUD5Q96G74 571 aa13.4□□□□□ -0.26
HLA-DQA1-202ENST00000374949 MS4A4AQ96JQ5 239 aa13.4□□□□□ -0.26
HLA-DQA1-202ENST00000374949 PUS3Q9BZE2 481 aaKnown RBP13.4□□□□□ -0.26
HLA-DQA1-202ENST00000374949 LRRCC1Q9C099 1032 aa13.4□□□□□ -0.26
HLA-DQA1-202ENST00000374949 SERPINA10Q9UK55 444 aa13.4□□□□□ -0.26
HLA-DQA1-202ENST00000374949 CCL15-CCL14A0A0B4J2E2 113 aa13.39□□□□□ -0.27
HLA-DQA1-202ENST00000374949 HIBADHP31937 336 aaKnown RBP13.39□□□□□ -0.27
HLA-DQA1-202ENST00000374949 CRKP46108 304 aa13.39□□□□□ -0.27
HLA-DQA1-202ENST00000374949 CACNB3P54284 484 aa13.39□□□□□ -0.27
HLA-DQA1-202ENST00000374949 G3BP1Q13283 466 aaKnown RBP eCLIP13.39□□□□□ -0.27
HLA-DQA1-202ENST00000374949 CCL15Q16663 113 aa13.39□□□□□ -0.27
HLA-DQA1-202ENST00000374949 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.39□□□□□ -0.27
HLA-DQA1-202ENST00000374949 FAM84BQ96KN1 310 aaPredicted RBP13.39□□□□□ -0.27
HLA-DQA1-202ENST00000374949 IQSEC3Q9UPP2 1182 aaPredicted RBP13.39□□□□□ -0.27
HLA-DQA1-202ENST00000374949 PTCH2Q9Y6C5 1203 aa13.39□□□□□ -0.27
HLA-DQA1-202ENST00000374949 SMARCA5O60264 1052 aaPredicted RBP13.38□□□□□ -0.27
HLA-DQA1-202ENST00000374949 CHAF1AQ13111 956 aaPredicted RBP13.38□□□□□ -0.27
HLA-DQA1-202ENST00000374949 UBE4AQ14139 1066 aa13.38□□□□□ -0.27
HLA-DQA1-202ENST00000374949 ERC1Q8IUD2 1116 aa13.38□□□□□ -0.27
HLA-DQA1-202ENST00000374949 FAM43AQ8N2R8 423 aa13.38□□□□□ -0.27
HLA-DQA1-202ENST00000374949 ZNF333Q96JL9 665 aa13.38□□□□□ -0.27
HLA-DQA1-202ENST00000374949 MYH13Q9UKX3 1938 aa13.38□□□□□ -0.27
HLA-DQA1-202ENST00000374949 MYCP01106 439 aaPredicted RBP13.37□□□□□ -0.27
HLA-DQA1-202ENST00000374949 RFX5P48382 616 aaPredicted RBP13.37□□□□□ -0.27
HLA-DQA1-202ENST00000374949 MAP3K9P80192 1104 aa13.37□□□□□ -0.27
HLA-DQA1-202ENST00000374949 OS9Q13438 667 aaPredicted RBP13.37□□□□□ -0.27
HLA-DQA1-202ENST00000374949 SLC9C1Q4G0N8 1177 aa13.37□□□□□ -0.27
HLA-DQA1-202ENST00000374949 KIF1BPQ96EK5 621 aa13.37□□□□□ -0.27
HLA-DQA1-202ENST00000374949 ZFYVE28Q9HCC9 887 aa13.37□□□□□ -0.27
HLA-DQA1-202ENST00000374949 COPRSQ9NQ92 184 aa13.37□□□□□ -0.27
HLA-DQA1-202ENST00000374949 PA2G4Q9UQ80 394 aaKnown RBP13.37□□□□□ -0.27
HLA-DQA1-202ENST00000374949 CSADQ9Y600 493 aa13.37□□□□□ -0.27
HLA-DQA1-202ENST00000374949 TRIOBPQ9H2D6 2365 aa13.36□□□□□ -0.27
HLA-DQA1-202ENST00000374949 SPDYE5A6NIY4 337 aa13.36□□□□□ -0.27
HLA-DQA1-202ENST00000374949 TNNI2P48788 182 aa13.36□□□□□ -0.27
HLA-DQA1-202ENST00000374949 GTF2A2P52657 109 aa13.36□□□□□ -0.27
HLA-DQA1-202ENST00000374949 RHPN1Q8TCX5 695 aa13.36□□□□□ -0.27
HLA-DQA1-202ENST00000374949 TMEM106CQ9BVX2 250 aa13.36□□□□□ -0.27
HLA-DQA1-202ENST00000374949 ARHGAP39Q9C0H5 1083 aa13.36□□□□□ -0.27
HLA-DQA1-202ENST00000374949 SNCAIPQ9Y6H5 919 aa13.36□□□□□ -0.27
HLA-DQA1-202ENST00000374949 ECM2O94769 699 aaPredicted RBP13.35□□□□□ -0.27
HLA-DQA1-202ENST00000374949 VPS37DQ86XT2 251 aa13.35□□□□□ -0.27
HLA-DQA1-202ENST00000374949 WRNIP1Q96S55 665 aa13.35□□□□□ -0.27
HLA-DQA1-202ENST00000374949 BCL11AQ9H165 835 aa13.35□□□□□ -0.27
HLA-DQA1-202ENST00000374949 MROH5Q6ZUA9 1318 aa13.35□□□□□ -0.27
HLA-DQA1-202ENST00000374949 SLC4A8Q2Y0W8 1093 aa13.34□□□□□ -0.27
HLA-DQA1-202ENST00000374949 LRRC24Q50LG9 513 aa13.34□□□□□ -0.27
HLA-DQA1-202ENST00000374949 PLEKHM2Q8IWE5 1019 aa13.34□□□□□ -0.27
HLA-DQA1-202ENST00000374949 SH3TC2Q8TF17 1288 aa13.34□□□□□ -0.27
HLA-DQA1-202ENST00000374949 ZKSCAN4Q969J2 545 aaPredicted RBP13.34□□□□□ -0.27
HLA-DQA1-202ENST00000374949 TEKT1Q969V4 418 aa13.34□□□□□ -0.27
HLA-DQA1-202ENST00000374949 RIPOR2Q9Y4F9 1068 aa13.34□□□□□ -0.27
HLA-DQA1-202ENST00000374949 BTBD19C9JJ37 291 aa13.33□□□□□ -0.28
HLA-DQA1-202ENST00000374949 FRAT2O75474 233 aaPredicted RBP13.33□□□□□ -0.28
HLA-DQA1-202ENST00000374949 CETPP11597 493 aa13.33□□□□□ -0.28
HLA-DQA1-202ENST00000374949 FXR1P51114 621 aaKnown RBP eCLIP13.33□□□□□ -0.28
HLA-DQA1-202ENST00000374949 LACTBP83111 547 aaPredicted RBP13.33□□□□□ -0.28
HLA-DQA1-202ENST00000374949 METTL24Q5JXM2 366 aa13.33□□□□□ -0.28
HLA-DQA1-202ENST00000374949 FBXO33Q7Z6M2 555 aa13.33□□□□□ -0.28
HLA-DQA1-202ENST00000374949 CLASRPQ8N2M8 674 aaKnown RBP13.33□□□□□ -0.28
HLA-DQA1-202ENST00000374949 KLHDC4Q8TBB5 520 aa13.33□□□□□ -0.28
HLA-DQA1-202ENST00000374949 SIL1Q9H173 461 aa13.33□□□□□ -0.28
HLA-DQA1-202ENST00000374949 IL1RAPL2Q9NP60 686 aa13.33□□□□□ -0.28
HLA-DQA1-202ENST00000374949 TMOD2Q9NZR1 351 aa13.33□□□□□ -0.28
HLA-DQA1-202ENST00000374949 FBXO3Q9UK99 471 aa13.33□□□□□ -0.28
HLA-DQA1-202ENST00000374949 RPAP1Q9BWH6 1393 aaPredicted RBP13.32□□□□□ -0.28
HLA-DQA1-202ENST00000374949 IRF6O14896 467 aa13.32□□□□□ -0.28
HLA-DQA1-202ENST00000374949 TLR2O60603 784 aa13.32□□□□□ -0.28
HLA-DQA1-202ENST00000374949 ARHGEF6Q15052 776 aa13.32□□□□□ -0.28
HLA-DQA1-202ENST00000374949 CAVIN4Q5BKX8 364 aa13.32□□□□□ -0.28
HLA-DQA1-202ENST00000374949 NBPF11Q86T75 865 aa13.32□□□□□ -0.28
HLA-DQA1-202ENST00000374949 ERO1BQ86YB8 467 aa13.32□□□□□ -0.28
HLA-DQA1-202ENST00000374949 VGLL2Q8N8G2 317 aa13.32□□□□□ -0.28
HLA-DQA1-202ENST00000374949 TBC1D22AQ8WUA7 517 aa13.32□□□□□ -0.28
HLA-DQA1-202ENST00000374949 ZDHHC15Q96MV8 337 aa13.32□□□□□ -0.28
HLA-DQA1-202ENST00000374949 AK9Q5TCS8 1911 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms