RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 ZBTB12Q9Y330 459 aaPredicted RBP18.39■□□□□ 0.53
CCDC40-202ENST00000374876 F13A1P00488 732 aa18.39■□□□□ 0.53
CCDC40-202ENST00000374876 RPS6KB1P23443 525 aa18.39■□□□□ 0.53
CCDC40-202ENST00000374876 CAVIN4Q5BKX8 364 aa18.39■□□□□ 0.53
CCDC40-202ENST00000374876 FBXO33Q7Z6M2 555 aa18.39■□□□□ 0.53
CCDC40-202ENST00000374876 RBSNQ9H1K0 784 aa18.39■□□□□ 0.53
CCDC40-202ENST00000374876 GPBP1L1Q9HC44 474 aaPredicted RBP18.39■□□□□ 0.53
CCDC40-202ENST00000374876 TPCN1Q9ULQ1 816 aa18.39■□□□□ 0.53
CCDC40-202ENST00000374876 JAG2Q9Y219 1238 aa18.39■□□□□ 0.53
CCDC40-202ENST00000374876 KRT32Q14532 448 aa18.38■□□□□ 0.53
CCDC40-202ENST00000374876 TNIP1Q15025 636 aa18.38■□□□□ 0.53
CCDC40-202ENST00000374876 TSGA10IPQ3SY00 556 aa18.38■□□□□ 0.53
CCDC40-202ENST00000374876 TMEM87AQ8NBN3 555 aa18.38■□□□□ 0.53
CCDC40-202ENST00000374876 PPP1R9BQ96SB3 815 aa18.38■□□□□ 0.53
CCDC40-202ENST00000374876 MXD3Q9BW11 206 aa18.38■□□□□ 0.53
CCDC40-202ENST00000374876 GADD45BO75293 160 aaPredicted RBP18.37■□□□□ 0.53
CCDC40-202ENST00000374876 IL1R1P14778 569 aa18.37■□□□□ 0.53
CCDC40-202ENST00000374876 GTF2IP78347 998 aa18.37■□□□□ 0.53
CCDC40-202ENST00000374876 MCMDC2Q4G0Z9 681 aa18.37■□□□□ 0.53
CCDC40-202ENST00000374876 NECAB1Q8N987 351 aa18.37■□□□□ 0.53
CCDC40-202ENST00000374876 KBTBD3Q8NAB2 608 aa18.37■□□□□ 0.53
CCDC40-202ENST00000374876 XAGE2Q96GT9 111 aa18.37■□□□□ 0.53
CCDC40-202ENST00000374876 ALDH8A1Q9H2A2 487 aaPredicted RBP18.37■□□□□ 0.53
CCDC40-202ENST00000374876 CNPY2Q9Y2B0 182 aa18.37■□□□□ 0.53
CCDC40-202ENST00000374876 POTECB2RU33 542 aa18.37■□□□□ 0.53
CCDC40-202ENST00000374876 TTLL5Q6EMB2 1281 aa18.37■□□□□ 0.53
CCDC40-202ENST00000374876 U3KPZ7 1027 aaPredicted RBP18.37■□□□□ 0.53
CCDC40-202ENST00000374876 ZNF609O15014 1411 aa18.37■□□□□ 0.53
CCDC40-202ENST00000374876 USP17L3A6NCW0 530 aa18.36■□□□□ 0.53
CCDC40-202ENST00000374876 USP17L4A6NCW7 530 aa18.36■□□□□ 0.53
CCDC40-202ENST00000374876 ST3GAL1Q11201 340 aa18.36■□□□□ 0.53
CCDC40-202ENST00000374876 USP17L1Q7RTZ2 530 aa18.36■□□□□ 0.53
CCDC40-202ENST00000374876 TDRD7Q8NHU6 1098 aaKnown RBP18.36■□□□□ 0.53
CCDC40-202ENST00000374876 TAF6LQ9Y6J9 622 aa18.36■□□□□ 0.53
CCDC40-202ENST00000374876 VIL1P09327 827 aaKnown RBP18.35■□□□□ 0.53
CCDC40-202ENST00000374876 TCEANC2Q96MN5 208 aa18.35■□□□□ 0.53
CCDC40-202ENST00000374876 PAG1Q9NWQ8 432 aa18.35■□□□□ 0.53
CCDC40-202ENST00000374876 MTMR6Q9Y217 621 aa18.35■□□□□ 0.53
CCDC40-202ENST00000374876 ESPNB1AK53 854 aa18.35■□□□□ 0.53
CCDC40-202ENST00000374876 GOLIM4O00461 696 aa18.35■□□□□ 0.53
CCDC40-202ENST00000374876 PHKA1P46020 1223 aa18.35■□□□□ 0.53
CCDC40-202ENST00000374876 GMPSP49915 693 aaPredicted RBP18.35■□□□□ 0.53
CCDC40-202ENST00000374876 CCDC129Q6ZRS4 1044 aa18.35■□□□□ 0.53
CCDC40-202ENST00000374876 SEC62Q99442 399 aaKnown RBP18.35■□□□□ 0.53
CCDC40-202ENST00000374876 SHTN1A0MZ66 631 aa18.34■□□□□ 0.53
CCDC40-202ENST00000374876 VPS37CA5D8V6 355 aaPredicted RBP18.34■□□□□ 0.53
CCDC40-202ENST00000374876 PDIA4P13667 645 aaKnown RBP18.34■□□□□ 0.53
CCDC40-202ENST00000374876 SCNN1DP51172 638 aa18.34■□□□□ 0.53
CCDC40-202ENST00000374876 COL9A3Q14050 684 aaPredicted RBP18.34■□□□□ 0.53
CCDC40-202ENST00000374876 CCDC102BQ68D86 513 aa18.34■□□□□ 0.53
CCDC40-202ENST00000374876 CHGBP05060 677 aa18.33■□□□□ 0.53
CCDC40-202ENST00000374876 CLCN1P35523 988 aa18.33■□□□□ 0.53
CCDC40-202ENST00000374876 EPS15P42566 896 aa18.33■□□□□ 0.53
CCDC40-202ENST00000374876 CSPP1Q1MSJ5 1256 aa18.33■□□□□ 0.53
CCDC40-202ENST00000374876 DACT2Q5SW24 774 aa18.33■□□□□ 0.53
CCDC40-202ENST00000374876 GORABQ5T7V8 394 aa18.33■□□□□ 0.53
CCDC40-202ENST00000374876 STRIP1Q5VSL9 837 aa18.33■□□□□ 0.53
CCDC40-202ENST00000374876 L3MBTL3Q96JM7 780 aaPredicted RBP18.33■□□□□ 0.53
CCDC40-202ENST00000374876 DTNBO60941 627 aa18.33■□□□□ 0.52
CCDC40-202ENST00000374876 PDCP20941 246 aa18.33■□□□□ 0.52
CCDC40-202ENST00000374876 CHAF1AQ13111 956 aaPredicted RBP18.33■□□□□ 0.52
CCDC40-202ENST00000374876 TOB2Q14106 344 aaPredicted RBP18.33■□□□□ 0.52
CCDC40-202ENST00000374876 LARP1BQ659C4 914 aaKnown RBP18.33■□□□□ 0.52
CCDC40-202ENST00000374876 RSBN1LQ6PCB5 846 aaPredicted RBP18.33■□□□□ 0.52
CCDC40-202ENST00000374876 TICAM2Q86XR7 235 aa18.33■□□□□ 0.52
CCDC40-202ENST00000374876 NEK1Q96PY6 1258 aa18.33■□□□□ 0.52
CCDC40-202ENST00000374876 FIBPO43427 364 aa18.32■□□□□ 0.52
CCDC40-202ENST00000374876 UBE2HP62256 183 aa18.32■□□□□ 0.52
CCDC40-202ENST00000374876 HELLSQ9NRZ9 838 aa18.32■□□□□ 0.52
CCDC40-202ENST00000374876 VEGFAP15692 232 aaPredicted RBP18.32■□□□□ 0.52
CCDC40-202ENST00000374876 TSPY26PQ9H489 355 aa18.32■□□□□ 0.52
CCDC40-202ENST00000374876 CNOT7Q9UIV1 285 aaKnown RBP18.32■□□□□ 0.52
CCDC40-202ENST00000374876 CERS5Q8N5B7 392 aa18.31■□□□□ 0.52
CCDC40-202ENST00000374876 GPRC5DQ9NZD1 345 aa18.31■□□□□ 0.52
CCDC40-202ENST00000374876 HACL1Q9UJ83 578 aa18.31■□□□□ 0.52
CCDC40-202ENST00000374876 WDR90Q96KV7 1748 aa18.31■□□□□ 0.52
CCDC40-202ENST00000374876 CYP21A2P08686 494 aa18.3■□□□□ 0.52
CCDC40-202ENST00000374876 LMOD1P29536 600 aaPredicted RBP18.3■□□□□ 0.52
CCDC40-202ENST00000374876 DNM1Q05193 864 aaKnown RBP18.3■□□□□ 0.52
CCDC40-202ENST00000374876 GNL3LQ9NVN8 582 aaKnown RBP18.3■□□□□ 0.52
CCDC40-202ENST00000374876 KIF3CO14782 793 aa18.3■□□□□ 0.52
CCDC40-202ENST00000374876 STK3Q13188 491 aa18.3■□□□□ 0.52
CCDC40-202ENST00000374876 CCDC183Q5T5S1 534 aa18.3■□□□□ 0.52
CCDC40-202ENST00000374876 MICALL2Q8IY33 904 aa18.3■□□□□ 0.52
CCDC40-202ENST00000374876 GMLQ99445 158 aa18.3■□□□□ 0.52
CCDC40-202ENST00000374876 TCHHQ07283 1943 aa18.3■□□□□ 0.52
CCDC40-202ENST00000374876 FAM205AQ6ZU69 1335 aa18.29■□□□□ 0.52
CCDC40-202ENST00000374876 MFSD14BQ5SR56 506 aa18.29■□□□□ 0.52
CCDC40-202ENST00000374876 KIAA0825Q8IV33 1275 aa18.29■□□□□ 0.52
CCDC40-202ENST00000374876 DPF2Q92785 391 aa18.29■□□□□ 0.52
CCDC40-202ENST00000374876 TAF1DQ9H5J8 278 aaPredicted RBP18.29■□□□□ 0.52
CCDC40-202ENST00000374876 PSME4Q14997 1843 aa18.29■□□□□ 0.52
CCDC40-202ENST00000374876 IQCA1LA6NCM1 817 aa18.28■□□□□ 0.52
CCDC40-202ENST00000374876 F8W031 263 aaPredicted RBP18.28■□□□□ 0.52
CCDC40-202ENST00000374876 EPHX2P34913 555 aa18.28■□□□□ 0.52
CCDC40-202ENST00000374876 TPRNQ4KMQ1 711 aa18.28■□□□□ 0.52
CCDC40-202ENST00000374876 ZMYM1Q5SVZ6 1142 aa18.28■□□□□ 0.52
CCDC40-202ENST00000374876 RBM26Q5T8P6 1007 aaKnown RBP18.28■□□□□ 0.52
CCDC40-202ENST00000374876 AGBL3Q8NEM8 1001 aa18.28■□□□□ 0.52
CCDC40-202ENST00000374876 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms