RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 IL1R1P14778 569 aa10.84□□□□□ -0.67
UPF2-202ENST00000357604 PTGER2P43116 358 aa10.84□□□□□ -0.67
UPF2-202ENST00000357604 CYP46A1Q9Y6A2 500 aa10.84□□□□□ -0.67
UPF2-202ENST00000357604 MROH7-TTC4A0A0A0MT08 1334 aa10.84□□□□□ -0.67
UPF2-202ENST00000357604 BMP2KLQ5H9B9 411 aa10.84□□□□□ -0.67
UPF2-202ENST00000357604 CATIPQ7Z7H3 387 aa10.84□□□□□ -0.67
UPF2-202ENST00000357604 FAM184AQ8NB25 1140 aa10.84□□□□□ -0.67
UPF2-202ENST00000357604 NCOA7Q8NI08 942 aa10.84□□□□□ -0.67
UPF2-202ENST00000357604 WASF1Q92558 559 aa10.84□□□□□ -0.67
UPF2-202ENST00000357604 SLC10A4Q96EP9 437 aa10.84□□□□□ -0.67
UPF2-202ENST00000357604 FAM84BQ96KN1 310 aaPredicted RBP10.84□□□□□ -0.67
UPF2-202ENST00000357604 ZNF532Q9HCE3 1301 aa10.84□□□□□ -0.67
UPF2-202ENST00000357604 CCDC196A0A1B0GTZ2 297 aa10.84□□□□□ -0.67
UPF2-202ENST00000357604 GLTPD2A6NH11 291 aa10.84□□□□□ -0.67
UPF2-202ENST00000357604 CUL5Q93034 780 aa10.84□□□□□ -0.67
UPF2-202ENST00000357604 GINM1Q9NU53 330 aa10.84□□□□□ -0.67
UPF2-202ENST00000357604 RFX7Q2KHR2 1363 aa10.84□□□□□ -0.67
UPF2-202ENST00000357604 KLRG2A4D1S0 409 aaPredicted RBP10.84□□□□□ -0.67
UPF2-202ENST00000357604 FBXO33Q7Z6M2 555 aa10.84□□□□□ -0.67
UPF2-202ENST00000357604 TGFBRAP1Q8WUH2 860 aa10.84□□□□□ -0.67
UPF2-202ENST00000357604 ATP8A2Q9NTI2 1148 aa10.84□□□□□ -0.67
UPF2-202ENST00000357604 PCDHB15Q9Y5E8 787 aa10.84□□□□□ -0.67
UPF2-202ENST00000357604 ADORA1P30542 326 aa10.83□□□□□ -0.68
UPF2-202ENST00000357604 SREBF2Q12772 1141 aa10.83□□□□□ -0.68
UPF2-202ENST00000357604 SAFBQ15424 915 aaKnown RBP eCLIP10.83□□□□□ -0.68
UPF2-202ENST00000357604 TDRD7Q8NHU6 1098 aaKnown RBP10.83□□□□□ -0.68
UPF2-202ENST00000357604 SLC5A4Q9NY91 659 aa10.83□□□□□ -0.68
UPF2-202ENST00000357604 POLLQ9UGP5 575 aa10.83□□□□□ -0.68
UPF2-202ENST00000357604 SAP30BPQ9UHR5 308 aaKnown RBP10.83□□□□□ -0.68
UPF2-202ENST00000357604 NUP188Q5SRE5 1749 aa10.83□□□□□ -0.68
UPF2-202ENST00000357604 CHADLQ6NUI6 762 aa10.83□□□□□ -0.68
UPF2-202ENST00000357604 TRIM22Q8IYM9 498 aa10.83□□□□□ -0.68
UPF2-202ENST00000357604 RREB1Q92766 1687 aa10.83□□□□□ -0.68
UPF2-202ENST00000357604 CALM1P0DP23 149 aa10.83□□□□□ -0.68
UPF2-202ENST00000357604 CALM2P0DP24 149 aa10.83□□□□□ -0.68
UPF2-202ENST00000357604 CALM3P0DP25 149 aa10.83□□□□□ -0.68
UPF2-202ENST00000357604 SDSP20132 328 aa10.83□□□□□ -0.68
UPF2-202ENST00000357604 DUOX1Q9NRD9 1551 aa10.83□□□□□ -0.68
UPF2-202ENST00000357604 MCM2P49736 904 aa10.83□□□□□ -0.68
UPF2-202ENST00000357604 FOXP4Q8IVH2 680 aaPredicted RBP10.83□□□□□ -0.68
UPF2-202ENST00000357604 ZNF609O15014 1411 aa10.82□□□□□ -0.68
UPF2-202ENST00000357604 PATL2C9JE40 543 aaKnown RBP10.82□□□□□ -0.68
UPF2-202ENST00000357604 ZC3H15Q8WU90 426 aaKnown RBP10.82□□□□□ -0.68
UPF2-202ENST00000357604 ARMT1Q9H993 441 aa10.82□□□□□ -0.68
UPF2-202ENST00000357604 ARFGEF2Q9Y6D5 1785 aa10.82□□□□□ -0.68
UPF2-202ENST00000357604 CLRN2A0PK11 232 aa10.82□□□□□ -0.68
UPF2-202ENST00000357604 CTCFLQ8NI51 663 aaPredicted RBP10.82□□□□□ -0.68
UPF2-202ENST00000357604 CCDC17Q96LX7 622 aa10.82□□□□□ -0.68
UPF2-202ENST00000357604 PNMA3Q9UL41 463 aa10.82□□□□□ -0.68
UPF2-202ENST00000357604 SALL1Q9NSC2 1324 aa10.82□□□□□ -0.68
UPF2-202ENST00000357604 CASP7P55210 303 aa10.82□□□□□ -0.68
UPF2-202ENST00000357604 NMIQ13287 307 aaPredicted RBP10.82□□□□□ -0.68
UPF2-202ENST00000357604 GNAQP50148 359 aa10.82□□□□□ -0.68
UPF2-202ENST00000357604 ATG9AQ7Z3C6 839 aa10.82□□□□□ -0.68
UPF2-202ENST00000357604 REM2Q8IYK8 340 aaPredicted RBP10.82□□□□□ -0.68
UPF2-202ENST00000357604 STK11IPQ8N1F8 1099 aa10.82□□□□□ -0.68
UPF2-202ENST00000357604 SIPA1L3O60292 1781 aaPredicted RBP10.81□□□□□ -0.68
UPF2-202ENST00000357604 ENTPD3O75355 529 aa10.81□□□□□ -0.68
UPF2-202ENST00000357604 MECOMQ03112 1051 aa10.81□□□□□ -0.68
UPF2-202ENST00000357604 TCP10Q12799 353 aa10.81□□□□□ -0.68
UPF2-202ENST00000357604 MAPKAPK5Q8IW41 473 aa10.81□□□□□ -0.68
UPF2-202ENST00000357604 PI4KBQ9UBF8 816 aa10.81□□□□□ -0.68
UPF2-202ENST00000357604 GOLGA6L22H0YM25 854 aa10.81□□□□□ -0.68
UPF2-202ENST00000357604 PDE6AP16499 860 aa10.81□□□□□ -0.68
UPF2-202ENST00000357604 RASGRF1Q13972 1273 aa10.81□□□□□ -0.68
UPF2-202ENST00000357604 LRP10Q7Z4F1 713 aa10.81□□□□□ -0.68
UPF2-202ENST00000357604 CSRNP1Q96S65 589 aa10.81□□□□□ -0.68
UPF2-202ENST00000357604 CCDC12Q8WUD4 166 aaPredicted RBP10.81□□□□□ -0.68
UPF2-202ENST00000357604 EAF2Q96CJ1 260 aaPredicted RBP10.81□□□□□ -0.68
UPF2-202ENST00000357604 MTMR7Q9Y216 660 aa10.81□□□□□ -0.68
UPF2-202ENST00000357604 IRX3P78415 501 aaPredicted RBP10.81□□□□□ -0.68
UPF2-202ENST00000357604 BLOC1S2Q6QNY1 142 aa10.81□□□□□ -0.68
UPF2-202ENST00000357604 SBF2Q86WG5 1849 aa10.81□□□□□ -0.68
UPF2-202ENST00000357604 GTF3C2Q8WUA4 911 aaPredicted RBP10.81□□□□□ -0.68
UPF2-202ENST00000357604 VIL1P09327 827 aaKnown RBP10.8□□□□□ -0.68
UPF2-202ENST00000357604 CCDC34Q96HJ3 373 aa10.8□□□□□ -0.68
UPF2-202ENST00000357604 H3BQV1 296 aa10.8□□□□□ -0.68
UPF2-202ENST00000357604 FSTL1Q12841 308 aa10.8□□□□□ -0.68
UPF2-202ENST00000357604 IFFO2Q5TF58 517 aa10.8□□□□□ -0.68
UPF2-202ENST00000357604 COL5A3P25940 1745 aaPredicted RBP10.8□□□□□ -0.68
UPF2-202ENST00000357604 PRKG1Q13976 671 aa10.8□□□□□ -0.68
UPF2-202ENST00000357604 DBNLQ9UJU6 430 aaKnown RBP10.8□□□□□ -0.68
UPF2-202ENST00000357604 ZBED4O75132 1171 aa10.8□□□□□ -0.68
UPF2-202ENST00000357604 CXCL9Q07325 125 aa10.8□□□□□ -0.68
UPF2-202ENST00000357604 C3orf67Q6ZVT6 689 aa10.8□□□□□ -0.68
UPF2-202ENST00000357604 NUP133Q8WUM0 1156 aa10.8□□□□□ -0.68
UPF2-202ENST00000357604 ZSCAN31Q96LW9 406 aaPredicted RBP10.8□□□□□ -0.68
UPF2-202ENST00000357604 ZNF70Q9UC06 446 aaPredicted RBP10.8□□□□□ -0.68
UPF2-202ENST00000357604 FAM205AQ6ZU69 1335 aa10.79□□□□□ -0.68
UPF2-202ENST00000357604 RFX5P48382 616 aaPredicted RBP10.79□□□□□ -0.68
UPF2-202ENST00000357604 ANGEL1Q9UNK9 670 aaKnown RBP10.79□□□□□ -0.68
UPF2-202ENST00000357604 SLC12A7Q9Y666 1083 aa10.79□□□□□ -0.68
UPF2-202ENST00000357604 CELF2O95319 508 aaKnown RBP10.79□□□□□ -0.68
UPF2-202ENST00000357604 IGHDP01880 384 aa10.79□□□□□ -0.68
UPF2-202ENST00000357604 RAB3GAP1Q15042 981 aa10.79□□□□□ -0.68
UPF2-202ENST00000357604 CERKLQ49MI3 558 aaPredicted RBP10.79□□□□□ -0.68
UPF2-202ENST00000357604 GIMAP6Q6P9H5 292 aa10.79□□□□□ -0.68
UPF2-202ENST00000357604 GGA3Q9NZ52 723 aa10.79□□□□□ -0.68
UPF2-202ENST00000357604 STAP2Q9UGK3 403 aa10.79□□□□□ -0.68
UPF2-202ENST00000357604 GPAA1O43292 621 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms