RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 USO1O60763 962 aaKnown RBP16.96■□□□□ 0.31
COL17A1-201ENST00000353479 GSDMDP57764 484 aa16.96■□□□□ 0.31
COL17A1-201ENST00000353479 PUS3Q9BZE2 481 aaKnown RBP16.96■□□□□ 0.31
COL17A1-201ENST00000353479 TMX1Q9H3N1 280 aa16.96■□□□□ 0.31
COL17A1-201ENST00000353479 IBTKQ9P2D0 1353 aaPredicted RBP16.96■□□□□ 0.31
COL17A1-201ENST00000353479 DOK7Q18PE1 504 aa16.95■□□□□ 0.3
COL17A1-201ENST00000353479 KIF4BQ2VIQ3 1234 aa16.95■□□□□ 0.3
COL17A1-201ENST00000353479 ATP2B4P23634 1241 aa16.95■□□□□ 0.3
COL17A1-201ENST00000353479 USP40Q9NVE5 1235 aa16.95■□□□□ 0.3
COL17A1-201ENST00000353479 RNF123Q5XPI4 1314 aa16.95■□□□□ 0.3
COL17A1-201ENST00000353479 CENPHQ9H3R5 247 aa16.95■□□□□ 0.3
COL17A1-201ENST00000353479 TMOD4Q9NZQ9 345 aa16.95■□□□□ 0.3
COL17A1-201ENST00000353479 PKD2L1Q9P0L9 805 aa16.95■□□□□ 0.3
COL17A1-201ENST00000353479 NEFHP12036 1026 aa16.95■□□□□ 0.3
COL17A1-201ENST00000353479 FCHSD1Q86WN1 690 aa16.95■□□□□ 0.3
COL17A1-201ENST00000353479 SEPT12Q8IYM1 358 aa16.95■□□□□ 0.3
COL17A1-201ENST00000353479 TRMT2AQ8IZ69 625 aaKnown RBP16.95■□□□□ 0.3
COL17A1-201ENST00000353479 DNAJC25Q9H1X3 360 aa16.95■□□□□ 0.3
COL17A1-201ENST00000353479 ADGRB3O60242 1522 aa16.94■□□□□ 0.3
COL17A1-201ENST00000353479 PSMA7O14818 248 aa16.94■□□□□ 0.3
COL17A1-201ENST00000353479 CASQ1P31415 396 aa16.94■□□□□ 0.3
COL17A1-201ENST00000353479 PUF60Q9UHX1 559 aaKnown RBP16.94■□□□□ 0.3
COL17A1-201ENST00000353479 CEP152O94986 1710 aa16.94■□□□□ 0.3
COL17A1-201ENST00000353479 KIF2AO00139 706 aaPredicted RBP16.94■□□□□ 0.3
COL17A1-201ENST00000353479 UBASH3AP57075 661 aa16.94■□□□□ 0.3
COL17A1-201ENST00000353479 FAM47AQ5JRC9 791 aa16.94■□□□□ 0.3
COL17A1-201ENST00000353479 DSCC1Q9BVC3 393 aa16.94■□□□□ 0.3
COL17A1-201ENST00000353479 HEG1Q9ULI3 1381 aa16.94■□□□□ 0.3
COL17A1-201ENST00000353479 UQCRHLA0A096LP55 91 aa16.93■□□□□ 0.3
COL17A1-201ENST00000353479 VWA3AA6NCI4 1184 aa16.93■□□□□ 0.3
COL17A1-201ENST00000353479 URI1O94763 535 aaPredicted RBP16.93■□□□□ 0.3
COL17A1-201ENST00000353479 UQCRHP07919 91 aa16.93■□□□□ 0.3
COL17A1-201ENST00000353479 GSPT1P15170 499 aaKnown RBP16.93■□□□□ 0.3
COL17A1-201ENST00000353479 UVSSAQ2YD98 709 aa16.93■□□□□ 0.3
COL17A1-201ENST00000353479 TEKT1Q969V4 418 aa16.93■□□□□ 0.3
COL17A1-201ENST00000353479 AXIN2Q9Y2T1 843 aa16.93■□□□□ 0.3
COL17A1-201ENST00000353479 A0A0D9SFI3 127 aa16.93■□□□□ 0.3
COL17A1-201ENST00000353479 E7EWF7 191 aa16.93■□□□□ 0.3
COL17A1-201ENST00000353479 DTNBO60941 627 aa16.93■□□□□ 0.3
COL17A1-201ENST00000353479 TNNT1P13805 278 aa16.93■□□□□ 0.3
COL17A1-201ENST00000353479 TFAP4Q01664 338 aa16.93■□□□□ 0.3
COL17A1-201ENST00000353479 AOPEPQ8N6M6 819 aa16.93■□□□□ 0.3
COL17A1-201ENST00000353479 TRPM1Q7Z4N2 1603 aa16.93■□□□□ 0.3
COL17A1-201ENST00000353479 FAM193AP78312 1265 aa16.93■□□□□ 0.3
COL17A1-201ENST00000353479 SEC62Q99442 399 aaKnown RBP16.93■□□□□ 0.3
COL17A1-201ENST00000353479 ZNF853P0CG23 659 aa16.93■□□□□ 0.3
COL17A1-201ENST00000353479 SLC1A4P43007 532 aa16.93■□□□□ 0.3
COL17A1-201ENST00000353479 PPARAQ07869 468 aa16.93■□□□□ 0.3
COL17A1-201ENST00000353479 PIK3AP1Q6ZUJ8 805 aa16.93■□□□□ 0.3
COL17A1-201ENST00000353479 UBXN4Q92575 508 aa16.93■□□□□ 0.3
COL17A1-201ENST00000353479 THRAP3Q9Y2W1 955 aaKnown RBP16.93■□□□□ 0.3
COL17A1-201ENST00000353479 CROCC2H7BZ55 1655 aa16.92■□□□□ 0.3
COL17A1-201ENST00000353479 NEMFO60524 1076 aa16.92■□□□□ 0.3
COL17A1-201ENST00000353479 OTUD7BQ6GQQ9 843 aa16.92■□□□□ 0.3
COL17A1-201ENST00000353479 MTERF4Q7Z6M4 381 aaKnown RBP16.92■□□□□ 0.3
COL17A1-201ENST00000353479 COPRSQ9NQ92 184 aa16.92■□□□□ 0.3
COL17A1-201ENST00000353479 PDE6AP16499 860 aa16.92■□□□□ 0.3
COL17A1-201ENST00000353479 HAUS7Q99871 368 aa16.92■□□□□ 0.3
COL17A1-201ENST00000353479 USP17L12C9JPN9 530 aa16.92■□□□□ 0.3
COL17A1-201ENST00000353479 USP17L21D6R901 530 aa16.92■□□□□ 0.3
COL17A1-201ENST00000353479 FAM13AO94988 1023 aa16.92■□□□□ 0.3
COL17A1-201ENST00000353479 HSPA4P34932 840 aa16.92■□□□□ 0.3
COL17A1-201ENST00000353479 SCNN1DP51172 638 aa16.92■□□□□ 0.3
COL17A1-201ENST00000353479 ERFEQ4G0M1 354 aa16.92■□□□□ 0.3
COL17A1-201ENST00000353479 KIF18AQ8NI77 898 aa16.92■□□□□ 0.3
COL17A1-201ENST00000353479 PHKBQ93100 1093 aa16.92■□□□□ 0.3
COL17A1-201ENST00000353479 PDE8BO95263 885 aa16.92■□□□□ 0.3
COL17A1-201ENST00000353479 SERPINB2P05120 415 aa16.91■□□□□ 0.3
COL17A1-201ENST00000353479 AKNAD1Q5T1N1 836 aa16.91■□□□□ 0.3
COL17A1-201ENST00000353479 FAM200AQ8TCP9 573 aa16.91■□□□□ 0.3
COL17A1-201ENST00000353479 LLPHQ9BRT6 129 aaKnown RBP16.91■□□□□ 0.3
COL17A1-201ENST00000353479 ZNF804BA4D1E1 1349 aa16.91■□□□□ 0.3
COL17A1-201ENST00000353479 BACH1O14867 736 aa16.91■□□□□ 0.3
COL17A1-201ENST00000353479 ADORA1P30542 326 aa16.91■□□□□ 0.3
COL17A1-201ENST00000353479 PHKA1P46020 1223 aa16.91■□□□□ 0.3
COL17A1-201ENST00000353479 KIAA0825Q8IV33 1275 aa16.91■□□□□ 0.3
COL17A1-201ENST00000353479 CYP27B1O15528 508 aa16.91■□□□□ 0.3
COL17A1-201ENST00000353479 KRT13P13646 458 aa16.91■□□□□ 0.3
COL17A1-201ENST00000353479 SDR42E1Q8WUS8 393 aa16.91■□□□□ 0.3
COL17A1-201ENST00000353479 CNKSR1Q969H4 720 aa16.91■□□□□ 0.3
COL17A1-201ENST00000353479 TCHPQ9BT92 498 aa16.91■□□□□ 0.3
COL17A1-201ENST00000353479 ARPP21Q9UBL0 812 aaPredicted RBP16.91■□□□□ 0.3
COL17A1-201ENST00000353479 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.91■□□□□ 0.3
COL17A1-201ENST00000353479 SEC31BQ9NQW1 1179 aa16.91■□□□□ 0.3
COL17A1-201ENST00000353479 MACROD2A1Z1Q3 448 aa16.9■□□□□ 0.3
COL17A1-201ENST00000353479 SEPT7Q16181 437 aaKnown RBP16.9■□□□□ 0.3
COL17A1-201ENST00000353479 RILPL1Q5EBL4 403 aa16.9■□□□□ 0.3
COL17A1-201ENST00000353479 A0A1B0GVL5 298 aa16.9■□□□□ 0.3
COL17A1-201ENST00000353479 CTAGE1Q96RT6 745 aa16.9■□□□□ 0.3
COL17A1-201ENST00000353479 IQUBQ8NA54 791 aa16.9■□□□□ 0.3
COL17A1-201ENST00000353479 TMEM87AQ8NBN3 555 aa16.9■□□□□ 0.3
COL17A1-201ENST00000353479 FERMT2Q96AC1 680 aa16.9■□□□□ 0.3
COL17A1-201ENST00000353479 C16orf45Q96MC5 204 aaPredicted RBP16.9■□□□□ 0.3
COL17A1-201ENST00000353479 STX17P56962 302 aa16.9■□□□□ 0.3
COL17A1-201ENST00000353479 PTH1RQ03431 593 aa16.9■□□□□ 0.3
COL17A1-201ENST00000353479 DIS3L2Q8IYB7 885 aaKnown RBP16.9■□□□□ 0.3
COL17A1-201ENST00000353479 SPAG5Q96R06 1193 aa16.9■□□□□ 0.3
COL17A1-201ENST00000353479 NAP1L4Q99733 375 aaKnown RBP16.9■□□□□ 0.3
COL17A1-201ENST00000353479 H7C1D1 291 aa16.89■□□□□ 0.3
COL17A1-201ENST00000353479 HOOK2Q96ED9 719 aa16.89■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms