RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 PPP1R12CQ9BZL4 782 aa14.86□□□□□ -0.03
COL6A3-202ENST00000347401 PUF60Q9UHX1 559 aaKnown RBP14.86□□□□□ -0.03
COL6A3-202ENST00000347401 GCKP35557 465 aa14.86□□□□□ -0.03
COL6A3-202ENST00000347401 SLC9C1Q4G0N8 1177 aa14.86□□□□□ -0.03
COL6A3-202ENST00000347401 ANKRD44Q8N8A2 993 aa14.86□□□□□ -0.03
COL6A3-202ENST00000347401 LRRD1A4D1F6 860 aa14.86□□□□□ -0.03
COL6A3-202ENST00000347401 EPB41P11171 864 aaKnown RBP14.86□□□□□ -0.03
COL6A3-202ENST00000347401 VSIG1Q86XK7 387 aa14.86□□□□□ -0.03
COL6A3-202ENST00000347401 CNPY4Q8N129 248 aa14.86□□□□□ -0.03
COL6A3-202ENST00000347401 ITIH3Q06033 890 aa14.85□□□□□ -0.03
COL6A3-202ENST00000347401 TOM1L2Q6ZVM7 507 aa14.85□□□□□ -0.03
COL6A3-202ENST00000347401 TYW1Q9NV66 732 aaKnown RBP14.85□□□□□ -0.03
COL6A3-202ENST00000347401 DUOX2Q9NRD8 1548 aa14.85□□□□□ -0.03
COL6A3-202ENST00000347401 CACNA1FO60840 1977 aa14.85□□□□□ -0.03
COL6A3-202ENST00000347401 KLHL14Q9P2G3 628 aa14.85□□□□□ -0.03
COL6A3-202ENST00000347401 MYO1AQ9UBC5 1043 aa14.85□□□□□ -0.03
COL6A3-202ENST00000347401 RHOXF2BP0C7M4 288 aa14.85□□□□□ -0.03
COL6A3-202ENST00000347401 RHOXF2Q9BQY4 288 aa14.85□□□□□ -0.03
COL6A3-202ENST00000347401 GDPD2Q9HCC8 539 aa14.85□□□□□ -0.03
COL6A3-202ENST00000347401 PHBP35232 272 aa14.85□□□□□ -0.03
COL6A3-202ENST00000347401 PDE1AP54750 535 aa14.85□□□□□ -0.03
COL6A3-202ENST00000347401 SEPT2Q15019 361 aa14.85□□□□□ -0.03
COL6A3-202ENST00000347401 LZTFL1Q9NQ48 299 aa14.85□□□□□ -0.03
COL6A3-202ENST00000347401 ANKIB1Q9P2G1 1089 aa14.85□□□□□ -0.03
COL6A3-202ENST00000347401 ANKRD20A3Q5VUR7 823 aa14.85□□□□□ -0.03
COL6A3-202ENST00000347401 RUFY3Q7L099 469 aa14.85□□□□□ -0.03
COL6A3-202ENST00000347401 TROVE2P10155 538 aaKnown RBP eCLIP14.84□□□□□ -0.03
COL6A3-202ENST00000347401 ZPR1O75312 459 aa14.84□□□□□ -0.03
COL6A3-202ENST00000347401 TRIM4Q9C037 500 aa14.84□□□□□ -0.03
COL6A3-202ENST00000347401 DNM1Q05193 864 aaKnown RBP14.84□□□□□ -0.03
COL6A3-202ENST00000347401 SLC4A8Q2Y0W8 1093 aa14.84□□□□□ -0.03
COL6A3-202ENST00000347401 LIN9Q5TKA1 542 aa14.84□□□□□ -0.03
COL6A3-202ENST00000347401 KRT79Q5XKE5 535 aa14.84□□□□□ -0.03
COL6A3-202ENST00000347401 MMRN2Q9H8L6 949 aa14.84□□□□□ -0.03
COL6A3-202ENST00000347401 CCDC152Q4G0S7 254 aa14.84□□□□□ -0.03
COL6A3-202ENST00000347401 RASEFQ8IZ41 740 aa14.84□□□□□ -0.03
COL6A3-202ENST00000347401 PPP4R1Q8TF05 950 aa14.84□□□□□ -0.03
COL6A3-202ENST00000347401 PHACTR2O75167 634 aa14.84□□□□□ -0.03
COL6A3-202ENST00000347401 ARL1P40616 181 aaPredicted RBP14.84□□□□□ -0.03
COL6A3-202ENST00000347401 PRPF31Q8WWY3 499 aaKnown RBP14.84□□□□□ -0.03
COL6A3-202ENST00000347401 ZNF644Q9H582 1327 aaPredicted RBP14.84□□□□□ -0.03
COL6A3-202ENST00000347401 SYNRGQ9UMZ2 1314 aa14.84□□□□□ -0.03
COL6A3-202ENST00000347401 PLCB3Q01970 1234 aa14.84□□□□□ -0.03
COL6A3-202ENST00000347401 GUCY1B3Q02153 619 aa14.84□□□□□ -0.03
COL6A3-202ENST00000347401 IGSF22Q8N9C0 903 aa14.84□□□□□ -0.03
COL6A3-202ENST00000347401 HSPA8P11142 646 aaKnown RBP14.83□□□□□ -0.03
COL6A3-202ENST00000347401 EPS15L1Q9UBC2 864 aa14.83□□□□□ -0.03
COL6A3-202ENST00000347401 TMOD4Q9NZQ9 345 aa14.83□□□□□ -0.03
COL6A3-202ENST00000347401 ARHGAP4P98171 946 aa14.83□□□□□ -0.04
COL6A3-202ENST00000347401 NUTM2GQ5VZR2 741 aa14.83□□□□□ -0.04
COL6A3-202ENST00000347401 TUBB6Q9BUF5 446 aa14.83□□□□□ -0.04
COL6A3-202ENST00000347401 ALDH1L1O75891 902 aa14.83□□□□□ -0.04
COL6A3-202ENST00000347401 SNCBQ16143 134 aa14.83□□□□□ -0.04
COL6A3-202ENST00000347401 PDCD2Q16342 344 aaPredicted RBP14.83□□□□□ -0.04
COL6A3-202ENST00000347401 UHRF1BP1Q6BDS2 1440 aa14.83□□□□□ -0.04
COL6A3-202ENST00000347401 LAMC3Q9Y6N6 1575 aa14.83□□□□□ -0.04
COL6A3-202ENST00000347401 KLF18A0A0U1RQI7 1052 aa14.83□□□□□ -0.04
COL6A3-202ENST00000347401 ZNF131P52739 623 aa14.83□□□□□ -0.04
COL6A3-202ENST00000347401 DHX32Q7L7V1 743 aaKnown RBP14.83□□□□□ -0.04
COL6A3-202ENST00000347401 WHAMMQ8TF30 809 aa14.83□□□□□ -0.04
COL6A3-202ENST00000347401 SLC8A3P57103 927 aa14.83□□□□□ -0.04
COL6A3-202ENST00000347401 ZKSCAN8Q15776 578 aaPredicted RBP14.83□□□□□ -0.04
COL6A3-202ENST00000347401 SPDYE3A6NKU9 549 aa14.83□□□□□ -0.04
COL6A3-202ENST00000347401 PFDN4Q9NQP4 134 aa14.83□□□□□ -0.04
COL6A3-202ENST00000347401 RAPGEF6Q8TEU7 1601 aa14.83□□□□□ -0.04
COL6A3-202ENST00000347401 EEF2P13639 858 aaKnown RBP14.82□□□□□ -0.04
COL6A3-202ENST00000347401 HPDP32754 393 aaPredicted RBP14.82□□□□□ -0.04
COL6A3-202ENST00000347401 LEO1Q8WVC0 666 aaPredicted RBP14.82□□□□□ -0.04
COL6A3-202ENST00000347401 CAPZA3Q96KX2 299 aa14.82□□□□□ -0.04
COL6A3-202ENST00000347401 SAMM50Q9Y512 469 aa14.82□□□□□ -0.04
COL6A3-202ENST00000347401 CCDC170Q8IYT3 715 aa14.82□□□□□ -0.04
COL6A3-202ENST00000347401 ZFP91Q96JP5 570 aaPredicted RBP14.82□□□□□ -0.04
COL6A3-202ENST00000347401 MYH9P35579 1960 aaKnown RBP14.82□□□□□ -0.04
COL6A3-202ENST00000347401 MICAL1Q8TDZ2 1067 aa14.82□□□□□ -0.04
COL6A3-202ENST00000347401 ZRANB1Q9UGI0 708 aa14.82□□□□□ -0.04
COL6A3-202ENST00000347401 HSPA1LP34931 641 aa14.82□□□□□ -0.04
COL6A3-202ENST00000347401 SECISBP2LQ93073 1101 aaKnown RBP14.82□□□□□ -0.04
COL6A3-202ENST00000347401 RIOK3O14730 519 aaKnown RBP14.82□□□□□ -0.04
COL6A3-202ENST00000347401 ERCC3P19447 782 aa14.82□□□□□ -0.04
COL6A3-202ENST00000347401 NRBF2Q96F24 287 aa14.82□□□□□ -0.04
COL6A3-202ENST00000347401 MAN1A1P33908 653 aa14.82□□□□□ -0.04
COL6A3-202ENST00000347401 PPP1R42Q7Z4L9 355 aa14.82□□□□□ -0.04
COL6A3-202ENST00000347401 VEZTQ9HBM0 779 aa14.82□□□□□ -0.04
COL6A3-202ENST00000347401 CRCPO75575 148 aa14.81□□□□□ -0.04
COL6A3-202ENST00000347401 CABP5Q9NP86 173 aa14.81□□□□□ -0.04
COL6A3-202ENST00000347401 TMOD3Q9NYL9 352 aa14.81□□□□□ -0.04
COL6A3-202ENST00000347401 ZNF75DP51815 510 aa14.81□□□□□ -0.04
COL6A3-202ENST00000347401 GRK7Q8WTQ7 553 aa14.81□□□□□ -0.04
COL6A3-202ENST00000347401 CALUO43852 315 aaPredicted RBP14.81□□□□□ -0.04
COL6A3-202ENST00000347401 DMTNQ08495 405 aa14.81□□□□□ -0.04
COL6A3-202ENST00000347401 PANK2Q9BZ23 570 aa14.81□□□□□ -0.04
COL6A3-202ENST00000347401 BCRP11274 1271 aa14.81□□□□□ -0.04
COL6A3-202ENST00000347401 PARD3Q8TEW0 1356 aa14.81□□□□□ -0.04
COL6A3-202ENST00000347401 STX10O60499 249 aa14.81□□□□□ -0.04
COL6A3-202ENST00000347401 AFMP43652 599 aa14.81□□□□□ -0.04
COL6A3-202ENST00000347401 HAUS3Q68CZ6 603 aa14.81□□□□□ -0.04
COL6A3-202ENST00000347401 CCDC25Q86WR0 208 aa14.81□□□□□ -0.04
COL6A3-202ENST00000347401 RGS22Q8NE09 1264 aa14.81□□□□□ -0.04
COL6A3-202ENST00000347401 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.81□□□□□ -0.04
COL6A3-202ENST00000347401 RAD54L2Q9Y4B4 1467 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 251.8 ms