RNA–Protein interactions for RNA: ENST00000343765.6

VIPAS39-202, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,761 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-202ENST00000343765 SPTLC2O15270 562 aa17.33■□□□□ 0.36
VIPAS39-202ENST00000343765 ZBTB43O43298 467 aa17.33■□□□□ 0.36
VIPAS39-202ENST00000343765 TERF1P54274 439 aa17.33■□□□□ 0.36
VIPAS39-202ENST00000343765 LRMPQ12912 555 aa17.33■□□□□ 0.36
VIPAS39-202ENST00000343765 LCORLQ8N3X6 602 aa17.33■□□□□ 0.36
VIPAS39-202ENST00000343765 ZKSCAN3Q9BRR0 538 aa17.33■□□□□ 0.36
VIPAS39-202ENST00000343765 WTIPA6NIX2 430 aaPredicted RBP17.32■□□□□ 0.36
VIPAS39-202ENST00000343765 GOLGA8AA7E2F4 631 aa17.32■□□□□ 0.36
VIPAS39-202ENST00000343765 NTSR2O95665 410 aa17.32■□□□□ 0.36
VIPAS39-202ENST00000343765 MARCKSP29966 332 aaPredicted RBP17.32■□□□□ 0.36
VIPAS39-202ENST00000343765 TDO2P48775 406 aa17.32■□□□□ 0.36
VIPAS39-202ENST00000343765 GNL2Q13823 731 aaKnown RBP17.32■□□□□ 0.36
VIPAS39-202ENST00000343765 ADALQ6DHV7 355 aa17.32■□□□□ 0.36
VIPAS39-202ENST00000343765 PLA2G4DQ86XP0 818 aa17.32■□□□□ 0.36
VIPAS39-202ENST00000343765 FMR1NBQ8N0W7 255 aaPredicted RBP17.32■□□□□ 0.36
VIPAS39-202ENST00000343765 AK7Q96M32 723 aa17.32■□□□□ 0.36
VIPAS39-202ENST00000343765 LY9Q9HBG7 655 aa17.32■□□□□ 0.36
VIPAS39-202ENST00000343765 TACC3Q9Y6A5 838 aa17.32■□□□□ 0.36
VIPAS39-202ENST00000343765 BECN2A8MW95 431 aa17.32■□□□□ 0.36
VIPAS39-202ENST00000343765 IFIT3O14879 490 aaKnown RBP17.32■□□□□ 0.36
VIPAS39-202ENST00000343765 CHRNDQ07001 517 aa17.32■□□□□ 0.36
VIPAS39-202ENST00000343765 IQCB1Q15051 598 aa17.32■□□□□ 0.36
VIPAS39-202ENST00000343765 BRAPQ7Z569 592 aa17.32■□□□□ 0.36
VIPAS39-202ENST00000343765 KIAA1524Q8TCG1 905 aa17.32■□□□□ 0.36
VIPAS39-202ENST00000343765 KCNG4Q8TDN1 519 aa17.32■□□□□ 0.36
VIPAS39-202ENST00000343765 IGDCC4Q8TDY8 1250 aa17.32■□□□□ 0.36
VIPAS39-202ENST00000343765 FAM13BQ9NYF5 915 aa17.32■□□□□ 0.36
VIPAS39-202ENST00000343765 ZSWIM5Q9P217 1185 aa17.32■□□□□ 0.36
VIPAS39-202ENST00000343765 LRP2BPQ9P2M1 347 aa17.32■□□□□ 0.36
VIPAS39-202ENST00000343765 PLCH1Q4KWH8 1693 aa17.32■□□□□ 0.36
VIPAS39-202ENST00000343765 PIP4K2BP78356 416 aa17.31■□□□□ 0.36
VIPAS39-202ENST00000343765 PARP10Q53GL7 1025 aa17.31■□□□□ 0.36
VIPAS39-202ENST00000343765 CLIP2Q9UDT6 1046 aa17.31■□□□□ 0.36
VIPAS39-202ENST00000343765 SLC4A4Q9Y6R1 1079 aa17.31■□□□□ 0.36
VIPAS39-202ENST00000343765 LRP5O75197 1615 aa17.31■□□□□ 0.36
VIPAS39-202ENST00000343765 GSG1L2A8MUP6 293 aa17.31■□□□□ 0.36
VIPAS39-202ENST00000343765 TPM3P06753 285 aa17.31■□□□□ 0.36
VIPAS39-202ENST00000343765 ANO1Q5XXA6 986 aa17.31■□□□□ 0.36
VIPAS39-202ENST00000343765 POLR3EQ9NVU0 708 aa17.31■□□□□ 0.36
VIPAS39-202ENST00000343765 EP400Q96L91 3159 aa17.3■□□□□ 0.36
VIPAS39-202ENST00000343765 KRT40Q6A162 431 aa17.3■□□□□ 0.36
VIPAS39-202ENST00000343765 CPLX2Q6PUV4 134 aaKnown RBP17.3■□□□□ 0.36
VIPAS39-202ENST00000343765 BICDL1Q6ZP65 573 aa17.3■□□□□ 0.36
VIPAS39-202ENST00000343765 VPS37DQ86XT2 251 aa17.3■□□□□ 0.36
VIPAS39-202ENST00000343765 TMEM87BQ96K49 555 aa17.3■□□□□ 0.36
VIPAS39-202ENST00000343765 CDCA7Q9BWT1 371 aaPredicted RBP17.3■□□□□ 0.36
VIPAS39-202ENST00000343765 SPTLC3Q9NUV7 552 aa17.3■□□□□ 0.36
VIPAS39-202ENST00000343765 ABCF2Q9UG63 623 aa17.3■□□□□ 0.36
VIPAS39-202ENST00000343765 RANBP6O60518 1105 aaKnown RBP17.3■□□□□ 0.36
VIPAS39-202ENST00000343765 CDKL5O76039 1030 aa17.3■□□□□ 0.36
VIPAS39-202ENST00000343765 YEATS4O95619 227 aa17.3■□□□□ 0.36
VIPAS39-202ENST00000343765 PTF1AQ7RTS3 328 aa17.3■□□□□ 0.36
VIPAS39-202ENST00000343765 SLC26A6Q9BXS9 759 aa17.3■□□□□ 0.36
VIPAS39-202ENST00000343765 ANO10Q9NW15 660 aa17.3■□□□□ 0.36
VIPAS39-202ENST00000343765 SLC12A7Q9Y666 1083 aa17.3■□□□□ 0.36
VIPAS39-202ENST00000343765 CCDC69A6NI79 296 aa17.29■□□□□ 0.36
VIPAS39-202ENST00000343765 BIN1O00499 593 aa17.29■□□□□ 0.36
VIPAS39-202ENST00000343765 CCDC82Q8N4S0 544 aa17.29■□□□□ 0.36
VIPAS39-202ENST00000343765 AOPEPQ8N6M6 819 aa17.29■□□□□ 0.36
VIPAS39-202ENST00000343765 IARSP41252 1262 aaKnown RBP17.29■□□□□ 0.36
VIPAS39-202ENST00000343765 MFSD6Q6ZSS7 791 aa17.29■□□□□ 0.36
VIPAS39-202ENST00000343765 C3orf67Q6ZVT6 689 aa17.29■□□□□ 0.36
VIPAS39-202ENST00000343765 A0A1W2PQ27 194 aa17.28■□□□□ 0.36
VIPAS39-202ENST00000343765 A0A1W2PQ64 194 aa17.28■□□□□ 0.36
VIPAS39-202ENST00000343765 A0A1W2PQD8 194 aa17.28■□□□□ 0.36
VIPAS39-202ENST00000343765 CAVIN2O95810 425 aa17.28■□□□□ 0.36
VIPAS39-202ENST00000343765 GYG1P46976 350 aa17.28■□□□□ 0.36
VIPAS39-202ENST00000343765 ALX1Q15699 326 aa17.28■□□□□ 0.36
VIPAS39-202ENST00000343765 AKNAD1Q5T1N1 836 aa17.28■□□□□ 0.36
VIPAS39-202ENST00000343765 CCDC144BQ3MJ40 725 aa17.28■□□□□ 0.36
VIPAS39-202ENST00000343765 FAM182BQ5T319 152 aa17.28■□□□□ 0.36
VIPAS39-202ENST00000343765 DHX40Q8IX18 779 aaKnown RBP17.28■□□□□ 0.36
VIPAS39-202ENST00000343765 CEP57L1Q8IYX8 460 aa17.28■□□□□ 0.36
VIPAS39-202ENST00000343765 FAM217BQ9NTX9 383 aaPredicted RBP17.28■□□□□ 0.36
VIPAS39-202ENST00000343765 C4AP0C0L4 1744 aa17.28■□□□□ 0.36
VIPAS39-202ENST00000343765 C4BP0C0L5 1744 aa17.28■□□□□ 0.36
VIPAS39-202ENST00000343765 MROH7-TTC4A0A0A0MT08 1334 aa17.28■□□□□ 0.36
VIPAS39-202ENST00000343765 WDHD1O75717 1129 aaPredicted RBP17.28■□□□□ 0.36
VIPAS39-202ENST00000343765 CYP7A1P22680 504 aa17.28■□□□□ 0.36
VIPAS39-202ENST00000343765 ZRSR1Q15695 479 aaKnown RBP17.28■□□□□ 0.36
VIPAS39-202ENST00000343765 ERFEQ4G0M1 354 aa17.28■□□□□ 0.36
VIPAS39-202ENST00000343765 CMTR1Q8N1G2 835 aaKnown RBP17.28■□□□□ 0.36
VIPAS39-202ENST00000343765 SDR42E1Q8WUS8 393 aa17.28■□□□□ 0.36
VIPAS39-202ENST00000343765 NACAP1Q9BZK3 213 aa17.28■□□□□ 0.36
VIPAS39-202ENST00000343765 DDX60Q8IY21 1712 aaKnown RBP17.27■□□□□ 0.36
VIPAS39-202ENST00000343765 MYH14Q7Z406 1995 aaKnown RBP17.27■□□□□ 0.36
VIPAS39-202ENST00000343765 RRP9O43818 475 aaKnown RBP17.27■□□□□ 0.36
VIPAS39-202ENST00000343765 TRIM29Q14134 588 aa17.27■□□□□ 0.36
VIPAS39-202ENST00000343765 ADGRA1Q86SQ6 560 aa17.27■□□□□ 0.36
VIPAS39-202ENST00000343765 TSC1Q92574 1164 aa17.27■□□□□ 0.36
VIPAS39-202ENST00000343765 THRAP3Q9Y2W1 955 aaKnown RBP17.27■□□□□ 0.36
VIPAS39-202ENST00000343765 COL4A1P02462 1669 aa17.27■□□□□ 0.35
VIPAS39-202ENST00000343765 ZNF202O95125 648 aa17.27■□□□□ 0.35
VIPAS39-202ENST00000343765 PFKFB1P16118 471 aa17.27■□□□□ 0.35
VIPAS39-202ENST00000343765 NTRK3Q16288 839 aa17.27■□□□□ 0.35
VIPAS39-202ENST00000343765 ISM2Q6H9L7 571 aa17.27■□□□□ 0.35
VIPAS39-202ENST00000343765 RAI14Q9P0K7 980 aa17.27■□□□□ 0.35
VIPAS39-202ENST00000343765 WNK3Q9BYP7 1800 aa17.27■□□□□ 0.35
VIPAS39-202ENST00000343765 MINDY4BA8MYZ0 360 aa17.26■□□□□ 0.35
VIPAS39-202ENST00000343765 SMIM22K7EJ46 135 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms