RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 EFCAB13Q8IY85 973 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 KRI1Q8N9T8 703 aaKnown RBP4.01□□□□□ -1.77
SYNE1-201ENST00000341594 INPP5FQ9Y2H2 1132 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 PPME1Q9Y570 386 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 SNAP25P60880 206 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 NBPF6Q5VWK0 638 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 NBPF5PQ86XG9 351 aaPredicted RBP4.01□□□□□ -1.77
SYNE1-201ENST00000341594 NBPF4Q96M43 638 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 LIMCH1Q9UPQ0 1083 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 SPTBP11277 2137 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 MX1P20591 662 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 SCP2P22307 547 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 SMARCAL1Q9NZC9 954 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 CHRNA2Q15822 529 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 DNAI1Q9UI46 699 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 INTUQ9ULD6 942 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 ZNFX1Q9P2E3 1918 aaKnown RBP4.01□□□□□ -1.77
SYNE1-201ENST00000341594 SERPINC1P01008 464 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 KLHDC4Q8TBB5 520 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 RTL1A6NKG5 1358 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 TARBP1Q13395 1621 aaKnown RBP4.01□□□□□ -1.77
SYNE1-201ENST00000341594 ABLIM1O14639 778 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 CHMP2AO43633 222 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 CREB3O43889 395 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 ARHGAP25P42331 645 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 ZNF397Q8NF99 534 aaPredicted RBP4.01□□□□□ -1.77
SYNE1-201ENST00000341594 MAGEC3Q8TD91 643 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 NUCKS1Q9H1E3 243 aaKnown RBP4.01□□□□□ -1.77
SYNE1-201ENST00000341594 ERO1AQ96HE7 468 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 NAP1L3Q99457 506 aaPredicted RBP4.01□□□□□ -1.77
SYNE1-201ENST00000341594 MKL2Q9ULH7 1088 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 IQCJ-SCHIP1C9J366 451 aaPredicted RBP4□□□□□ -1.77
SYNE1-201ENST00000341594 MRFAP1L1Q96HT8 127 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 CCDC151A5D8V7 595 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 CCDC28BQ9BUN5 200 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 ALG13Q9NP73 1137 aaKnown RBP4□□□□□ -1.77
SYNE1-201ENST00000341594 FKBP4Q02790 459 aaKnown RBP eCLIP4□□□□□ -1.77
SYNE1-201ENST00000341594 FILIP1LQ4L180 1135 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 PDCD7Q8N8D1 485 aaKnown RBP4□□□□□ -1.77
SYNE1-201ENST00000341594 C8orf37Q96NL8 207 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 ZSCAN20P17040 1043 aaPredicted RBP4□□□□□ -1.77
SYNE1-201ENST00000341594 BCS1LQ9Y276 419 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 TDRD6O60522 2096 aaKnown RBP4□□□□□ -1.77
SYNE1-201ENST00000341594 TBC1D10BQ4KMP7 808 aaPredicted RBP4□□□□□ -1.77
SYNE1-201ENST00000341594 STK38LQ9Y2H1 464 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 HDGFP51858 240 aaKnown RBP4□□□□□ -1.77
SYNE1-201ENST00000341594 DNM1Q05193 864 aaKnown RBP4□□□□□ -1.77
SYNE1-201ENST00000341594 EFCAB3Q8N7B9 438 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 PLEKHG2Q9H7P9 1386 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 PREX1Q8TCU6 1659 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 PPP2R3AQ06190 1150 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 CEP135Q66GS9 1140 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 CHGBP05060 677 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 USP6NLQ92738 828 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 OSBPL3Q9H4L5 887 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 ZCCHC11Q5TAX3 1644 aaKnown RBP4□□□□□ -1.77
SYNE1-201ENST00000341594 MAGEA9P43362 315 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 RINLQ6ZS11 566 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 LRRN4CLQ8ND94 238 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 ANKRD7Q92527 254 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 ABCC10Q5T3U5 1492 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 MYOM1P52179 1685 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 ZSCAN12O43309 604 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 DNAJC17Q9NVM6 304 aaKnown RBP4□□□□□ -1.77
SYNE1-201ENST00000341594 ABCA8O94911 1581 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 PSMA5P28066 241 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 CFAP57Q96MR6 1250 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 JAKMIP1Q96N16 626 aaKnown RBP4□□□□□ -1.77
SYNE1-201ENST00000341594 IRX1P78414 480 aaPredicted RBP4□□□□□ -1.77
SYNE1-201ENST00000341594 TTC31Q49AM3 519 aaPredicted RBP4□□□□□ -1.77
SYNE1-201ENST00000341594 VIPAS39Q9H9C1 493 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 DONSONQ9NYP3 566 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 BLVRAP53004 296 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 APOBRQ0VD83 1088 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 ATRIPQ8WXE1 791 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 DDX19AQ9NUU7 478 aaKnown RBP4□□□□□ -1.77
SYNE1-201ENST00000341594 TPX2Q9ULW0 747 aaKnown RBP4□□□□□ -1.77
SYNE1-201ENST00000341594 CCDC172P0C7W6 258 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 ZNF853P0CG23 659 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 GBP1P32455 592 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 PRPF4BQ13523 1007 aaKnown RBP4□□□□□ -1.77
SYNE1-201ENST00000341594 KCNK9Q9NPC2 374 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 SUGT1Q9Y2Z0 365 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 IPO7O95373 1038 aaKnown RBP4□□□□□ -1.77
SYNE1-201ENST00000341594 COPB2P35606 906 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 ITIH3Q06033 890 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 MAP3K12Q12852 859 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 TRIM68Q6AZZ1 485 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 RNPEPQ9H4A4 650 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 NPHP3Q7Z494 1330 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 TEFQ10587 303 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 PPFIBP2Q8ND30 876 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 EHBP1Q8NDI1 1231 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 RABGGTAQ92696 567 aa4□□□□□ -1.77
SYNE1-201ENST00000341594 WDR91A4D1P6 747 aa3.99□□□□□ -1.77
SYNE1-201ENST00000341594 ZNF174Q15697 407 aa3.99□□□□□ -1.77
SYNE1-201ENST00000341594 SEC62Q99442 399 aaKnown RBP3.99□□□□□ -1.77
SYNE1-201ENST00000341594 PLCB4Q15147 1175 aa3.99□□□□□ -1.77
SYNE1-201ENST00000341594 A0A1B0GUL7 405 aa3.99□□□□□ -1.77
SYNE1-201ENST00000341594 CEP104O60308 925 aa3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms