RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 BAIAP2L1Q9UHR4 511 aa9.78□□□□□ -0.84
RTN3-202ENST00000339997 V9GY48 417 aaPredicted RBP9.78□□□□□ -0.84
RTN3-202ENST00000339997 EIF4G3O43432 1585 aaKnown RBP9.78□□□□□ -0.84
RTN3-202ENST00000339997 GUCY2FP51841 1108 aa9.78□□□□□ -0.84
RTN3-202ENST00000339997 GYS2P54840 703 aa9.78□□□□□ -0.84
RTN3-202ENST00000339997 IFNL2Q8IZJ0 200 aa9.78□□□□□ -0.84
RTN3-202ENST00000339997 ANKS4BQ8N8V4 417 aa9.78□□□□□ -0.84
RTN3-202ENST00000339997 BICD1Q96G01 975 aa9.78□□□□□ -0.84
RTN3-202ENST00000339997 IQCGQ9H095 443 aaKnown RBP9.78□□□□□ -0.84
RTN3-202ENST00000339997 MCM9Q9NXL9 1143 aa9.78□□□□□ -0.84
RTN3-202ENST00000339997 RNF113AO15541 343 aaKnown RBP9.78□□□□□ -0.84
RTN3-202ENST00000339997 ARL1P40616 181 aaPredicted RBP9.78□□□□□ -0.84
RTN3-202ENST00000339997 DIS3L2Q8IYB7 885 aaKnown RBP9.78□□□□□ -0.84
RTN3-202ENST00000339997 CCDC24Q8N4L8 307 aa9.78□□□□□ -0.84
RTN3-202ENST00000339997 FAM212AQ96EL1 285 aa9.78□□□□□ -0.84
RTN3-202ENST00000339997 USP28Q96RU2 1077 aa9.78□□□□□ -0.84
RTN3-202ENST00000339997 NAPGQ99747 312 aaPredicted RBP9.78□□□□□ -0.84
RTN3-202ENST00000339997 SELENOOQ9BVL4 669 aa9.78□□□□□ -0.84
RTN3-202ENST00000339997 SHROOM2Q13796 1616 aa9.78□□□□□ -0.84
RTN3-202ENST00000339997 CAMSAP2Q08AD1 1489 aa9.78□□□□□ -0.84
RTN3-202ENST00000339997 PIK3AP1Q6ZUJ8 805 aa9.78□□□□□ -0.84
RTN3-202ENST00000339997 NOC4LQ9BVI4 516 aaKnown RBP9.78□□□□□ -0.84
RTN3-202ENST00000339997 COMMD10Q9Y6G5 202 aa9.78□□□□□ -0.84
RTN3-202ENST00000339997 E2F4Q16254 413 aa9.77□□□□□ -0.84
RTN3-202ENST00000339997 C8orf74Q6P047 294 aa9.77□□□□□ -0.84
RTN3-202ENST00000339997 MGARPQ8TDB4 240 aa9.77□□□□□ -0.84
RTN3-202ENST00000339997 NLRC4Q9NPP4 1024 aa9.77□□□□□ -0.84
RTN3-202ENST00000339997 BUB1BO60566 1050 aaPredicted RBP9.77□□□□□ -0.85
RTN3-202ENST00000339997 ERCC5P28715 1186 aaPredicted RBP9.77□□□□□ -0.85
RTN3-202ENST00000339997 DYMQ7RTS9 669 aa9.77□□□□□ -0.85
RTN3-202ENST00000339997 UNC5CLQ8IV45 518 aa9.77□□□□□ -0.85
RTN3-202ENST00000339997 IQUBQ8NA54 791 aa9.77□□□□□ -0.85
RTN3-202ENST00000339997 CUL5Q93034 780 aa9.77□□□□□ -0.85
RTN3-202ENST00000339997 FAM207AQ9NSI2 230 aaPredicted RBP9.77□□□□□ -0.85
RTN3-202ENST00000339997 STAMBPO95630 424 aa9.77□□□□□ -0.85
RTN3-202ENST00000339997 ACTN2P35609 894 aa9.77□□□□□ -0.85
RTN3-202ENST00000339997 PEX19P40855 299 aa9.77□□□□□ -0.85
RTN3-202ENST00000339997 CLNS1AP54105 237 aaKnown RBP9.77□□□□□ -0.85
RTN3-202ENST00000339997 LLGL1Q15334 1064 aa9.77□□□□□ -0.85
RTN3-202ENST00000339997 KCTD16Q68DU8 428 aa9.77□□□□□ -0.85
RTN3-202ENST00000339997 NAA16Q6N069 864 aaPredicted RBP9.77□□□□□ -0.85
RTN3-202ENST00000339997 MAEAQ7L5Y9 396 aa9.77□□□□□ -0.85
RTN3-202ENST00000339997 CNGA4Q8IV77 575 aa9.77□□□□□ -0.85
RTN3-202ENST00000339997 TMEM87AQ8NBN3 555 aa9.77□□□□□ -0.85
RTN3-202ENST00000339997 DNAJC5Q9H3Z4 198 aa9.77□□□□□ -0.85
RTN3-202ENST00000339997 CEP83Q9Y592 693 aa9.77□□□□□ -0.85
RTN3-202ENST00000339997 GOLGA6BA6NDN3 693 aa9.77□□□□□ -0.85
RTN3-202ENST00000339997 MBD4O95243 580 aa9.77□□□□□ -0.85
RTN3-202ENST00000339997 CCDC174Q6PII3 467 aa9.77□□□□□ -0.85
RTN3-202ENST00000339997 ADAT2Q7Z6V5 191 aaKnown RBP9.77□□□□□ -0.85
RTN3-202ENST00000339997 SPATA24Q86W54 205 aa9.77□□□□□ -0.85
RTN3-202ENST00000339997 CABS1Q96KC9 395 aa9.77□□□□□ -0.85
RTN3-202ENST00000339997 TCHPQ9BT92 498 aa9.77□□□□□ -0.85
RTN3-202ENST00000339997 LGR6Q9HBX8 967 aa9.77□□□□□ -0.85
RTN3-202ENST00000339997 TTC21BQ7Z4L5 1316 aa9.76□□□□□ -0.85
RTN3-202ENST00000339997 ZNF608Q9ULD9 1512 aaPredicted RBP9.76□□□□□ -0.85
RTN3-202ENST00000339997 IL15P40933 162 aaPredicted RBP9.76□□□□□ -0.85
RTN3-202ENST00000339997 MRPS25P82663 173 aaKnown RBP9.76□□□□□ -0.85
RTN3-202ENST00000339997 DTHD1Q6ZMT9 781 aa9.76□□□□□ -0.85
RTN3-202ENST00000339997 RASEFQ8IZ41 740 aa9.76□□□□□ -0.85
RTN3-202ENST00000339997 KRT23Q9C075 422 aa9.76□□□□□ -0.85
RTN3-202ENST00000339997 SYNCQ9H7C4 482 aa9.76□□□□□ -0.85
RTN3-202ENST00000339997 TMOD2Q9NZR1 351 aa9.76□□□□□ -0.85
RTN3-202ENST00000339997 TNIP1Q15025 636 aa9.76□□□□□ -0.85
RTN3-202ENST00000339997 ADCK5Q3MIX3 580 aa9.76□□□□□ -0.85
RTN3-202ENST00000339997 CLIC6Q96NY7 704 aa9.76□□□□□ -0.85
RTN3-202ENST00000339997 SAMD15Q9P1V8 674 aa9.76□□□□□ -0.85
RTN3-202ENST00000339997 ATP6V0A2Q9Y487 856 aa9.76□□□□□ -0.85
RTN3-202ENST00000339997 ENC1O14682 589 aa9.76□□□□□ -0.85
RTN3-202ENST00000339997 PCK1P35558 622 aa9.76□□□□□ -0.85
RTN3-202ENST00000339997 ARID5BQ14865 1188 aa9.76□□□□□ -0.85
RTN3-202ENST00000339997 PPP1R7Q15435 360 aa9.76□□□□□ -0.85
RTN3-202ENST00000339997 C6orf163Q5TEZ5 329 aa9.76□□□□□ -0.85
RTN3-202ENST00000339997 CSGALNACT2Q8N6G5 542 aa9.76□□□□□ -0.85
RTN3-202ENST00000339997 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.76□□□□□ -0.85
RTN3-202ENST00000339997 PDE4DQ08499 809 aa9.76□□□□□ -0.85
RTN3-202ENST00000339997 ARMT1Q9H993 441 aa9.76□□□□□ -0.85
RTN3-202ENST00000339997 DDX41Q9UJV9 622 aaKnown RBP9.76□□□□□ -0.85
RTN3-202ENST00000339997 TPCN1Q9ULQ1 816 aa9.76□□□□□ -0.85
RTN3-202ENST00000339997 STK38LQ9Y2H1 464 aa9.76□□□□□ -0.85
RTN3-202ENST00000339997 E7EVH7 732 aa9.75□□□□□ -0.85
RTN3-202ENST00000339997 ZNF500O60304 480 aaPredicted RBP9.75□□□□□ -0.85
RTN3-202ENST00000339997 CEP104O60308 925 aa9.75□□□□□ -0.85
RTN3-202ENST00000339997 ADD1P35611 737 aaKnown RBP9.75□□□□□ -0.85
RTN3-202ENST00000339997 CTDSPL2Q05D32 466 aa9.75□□□□□ -0.85
RTN3-202ENST00000339997 GABPB1Q06547 395 aaPredicted RBP9.75□□□□□ -0.85
RTN3-202ENST00000339997 KRT28Q7Z3Y7 464 aa9.75□□□□□ -0.85
RTN3-202ENST00000339997 DDX23Q9BUQ8 820 aaKnown RBP9.75□□□□□ -0.85
RTN3-202ENST00000339997 FANCLQ9NW38 375 aa9.75□□□□□ -0.85
RTN3-202ENST00000339997 ELP1O95163 1332 aa9.75□□□□□ -0.85
RTN3-202ENST00000339997 IQGAP2Q13576 1575 aa9.75□□□□□ -0.85
RTN3-202ENST00000339997 ARID4AP29374 1257 aaPredicted RBP9.75□□□□□ -0.85
RTN3-202ENST00000339997 DIXDC1Q155Q3 683 aa9.75□□□□□ -0.85
RTN3-202ENST00000339997 CACTINQ8WUQ7 758 aaKnown RBP9.75□□□□□ -0.85
RTN3-202ENST00000339997 TBC1D5Q92609 795 aa9.75□□□□□ -0.85
RTN3-202ENST00000339997 PDE11AQ9HCR9 933 aa9.75□□□□□ -0.85
RTN3-202ENST00000339997 CAPN7Q9Y6W3 813 aa9.75□□□□□ -0.85
RTN3-202ENST00000339997 TTC41PQ6P2S7 1318 aa9.75□□□□□ -0.85
RTN3-202ENST00000339997 EFCAB5A4FU69 1503 aa9.75□□□□□ -0.85
RTN3-202ENST00000339997 TAF5LO75529 589 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms