RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 AATFQ9NY61 560 aaKnown RBP eCLIP15.8■□□□□ 0.12
HMGB1-202ENST00000339872 WDR19Q8NEZ3 1342 aa15.79■□□□□ 0.12
HMGB1-202ENST00000339872 B4E1Z4 1266 aa15.79■□□□□ 0.12
HMGB1-202ENST00000339872 PFKFB2O60825 505 aa15.79■□□□□ 0.12
HMGB1-202ENST00000339872 IL1R1P14778 569 aa15.79■□□□□ 0.12
HMGB1-202ENST00000339872 TRAK2O60296 914 aa15.79■□□□□ 0.12
HMGB1-202ENST00000339872 PTMSP20962 102 aa15.79■□□□□ 0.12
HMGB1-202ENST00000339872 CHAMP1Q96JM3 812 aa15.79■□□□□ 0.12
HMGB1-202ENST00000339872 INCENPQ9NQS7 918 aa15.79■□□□□ 0.12
HMGB1-202ENST00000339872 ZSCAN22P10073 491 aaPredicted RBP15.78■□□□□ 0.12
HMGB1-202ENST00000339872 AKNAD1Q5T1N1 836 aa15.78■□□□□ 0.12
HMGB1-202ENST00000339872 TMED8Q6PL24 325 aaPredicted RBP15.78■□□□□ 0.12
HMGB1-202ENST00000339872 CYB5R4Q7L1T6 521 aa15.78■□□□□ 0.12
HMGB1-202ENST00000339872 MPNDQ8N594 471 aa15.78■□□□□ 0.12
HMGB1-202ENST00000339872 NKX2-3Q8TAU0 364 aa15.78■□□□□ 0.12
HMGB1-202ENST00000339872 ZNF274Q96GC6 653 aaPredicted RBP15.78■□□□□ 0.12
HMGB1-202ENST00000339872 TMX4Q9H1E5 349 aaPredicted RBP15.78■□□□□ 0.12
HMGB1-202ENST00000339872 MYH2Q9UKX2 1941 aa15.78■□□□□ 0.12
HMGB1-202ENST00000339872 H0YIN7 160 aa15.78■□□□□ 0.12
HMGB1-202ENST00000339872 RIMBP2O15034 1052 aa15.78■□□□□ 0.12
HMGB1-202ENST00000339872 PDIA3P30101 505 aaKnown RBP15.78■□□□□ 0.12
HMGB1-202ENST00000339872 PPARAQ07869 468 aa15.78■□□□□ 0.12
HMGB1-202ENST00000339872 DPP8Q6V1X1 898 aaPredicted RBP15.78■□□□□ 0.12
HMGB1-202ENST00000339872 MFSD6Q6ZSS7 791 aa15.78■□□□□ 0.12
HMGB1-202ENST00000339872 STK11IPQ8N1F8 1099 aa15.78■□□□□ 0.12
HMGB1-202ENST00000339872 PDGFDQ9GZP0 370 aaPredicted RBP15.78■□□□□ 0.12
HMGB1-202ENST00000339872 LAMB1P07942 1786 aa15.78■□□□□ 0.12
HMGB1-202ENST00000339872 MINDY4BA8MYZ0 360 aa15.77■□□□□ 0.12
HMGB1-202ENST00000339872 JAK2O60674 1132 aa15.77■□□□□ 0.12
HMGB1-202ENST00000339872 CCT2P78371 535 aaKnown RBP15.77■□□□□ 0.12
HMGB1-202ENST00000339872 GRIK5Q16478 980 aa15.77■□□□□ 0.12
HMGB1-202ENST00000339872 STAG1Q8WVM7 1258 aa15.77■□□□□ 0.12
HMGB1-202ENST00000339872 CRNKL1Q9BZJ0 848 aaKnown RBP15.77■□□□□ 0.12
HMGB1-202ENST00000339872 CNNM2Q9H8M5 875 aa15.77■□□□□ 0.12
HMGB1-202ENST00000339872 TOMM22Q9NS69 142 aa15.77■□□□□ 0.12
HMGB1-202ENST00000339872 TACC3Q9Y6A5 838 aa15.77■□□□□ 0.12
HMGB1-202ENST00000339872 KLF18A0A0U1RQI7 1052 aa15.77■□□□□ 0.11
HMGB1-202ENST00000339872 VPS37CA5D8V6 355 aaPredicted RBP15.77■□□□□ 0.11
HMGB1-202ENST00000339872 FOXD4L6Q3SYB3 417 aaPredicted RBP15.77■□□□□ 0.11
HMGB1-202ENST00000339872 LARP1BQ659C4 914 aaKnown RBP15.77■□□□□ 0.11
HMGB1-202ENST00000339872 FOXD4L3Q6VB84 417 aaPredicted RBP15.77■□□□□ 0.11
HMGB1-202ENST00000339872 KRT23Q9C075 422 aa15.77■□□□□ 0.11
HMGB1-202ENST00000339872 NCOA5Q9HCD5 579 aaKnown RBP15.77■□□□□ 0.11
HMGB1-202ENST00000339872 SLX4Q8IY92 1834 aa15.77■□□□□ 0.11
HMGB1-202ENST00000339872 IGSF3O75054 1194 aa15.76■□□□□ 0.11
HMGB1-202ENST00000339872 KDM4AO75164 1064 aa15.76■□□□□ 0.11
HMGB1-202ENST00000339872 PDCP20941 246 aa15.76■□□□□ 0.11
HMGB1-202ENST00000339872 CHRNA5P30532 468 aa15.76■□□□□ 0.11
HMGB1-202ENST00000339872 EVCP57679 992 aa15.76■□□□□ 0.11
HMGB1-202ENST00000339872 DIXDC1Q155Q3 683 aa15.76■□□□□ 0.11
HMGB1-202ENST00000339872 RRP12Q5JTH9 1297 aaKnown RBP15.76■□□□□ 0.11
HMGB1-202ENST00000339872 STYK1Q6J9G0 422 aa15.76■□□□□ 0.11
HMGB1-202ENST00000339872 ANGEL1Q9UNK9 670 aaKnown RBP15.76■□□□□ 0.11
HMGB1-202ENST00000339872 MTMR6Q9Y217 621 aa15.76■□□□□ 0.11
HMGB1-202ENST00000339872 GOLGA8BA8MQT2 603 aa15.76■□□□□ 0.11
HMGB1-202ENST00000339872 F13A1P00488 732 aa15.76■□□□□ 0.11
HMGB1-202ENST00000339872 GSTO1P78417 241 aa15.76■□□□□ 0.11
HMGB1-202ENST00000339872 LLPHQ9BRT6 129 aaKnown RBP15.76■□□□□ 0.11
HMGB1-202ENST00000339872 ZC3H12CQ9C0D7 883 aaKnown RBP15.76■□□□□ 0.11
HMGB1-202ENST00000339872 RNF41Q9H4P4 317 aaPredicted RBP15.76■□□□□ 0.11
HMGB1-202ENST00000339872 BRPF3Q9ULD4 1205 aa15.76■□□□□ 0.11
HMGB1-202ENST00000339872 SH2B2O14492 632 aaPredicted RBP15.75■□□□□ 0.11
HMGB1-202ENST00000339872 GSE1Q14687 1217 aa15.75■□□□□ 0.11
HMGB1-202ENST00000339872 MFSD14BQ5SR56 506 aa15.75■□□□□ 0.11
HMGB1-202ENST00000339872 GIMAP6Q6P9H5 292 aa15.75■□□□□ 0.11
HMGB1-202ENST00000339872 DDX11Q96FC9 970 aa15.75■□□□□ 0.11
HMGB1-202ENST00000339872 TCHHQ07283 1943 aa15.75■□□□□ 0.11
HMGB1-202ENST00000339872 CYP2D7A0A087X1C5 515 aa15.74■□□□□ 0.11
HMGB1-202ENST00000339872 NSUN7Q8NE18 718 aaKnown RBP15.74■□□□□ 0.11
HMGB1-202ENST00000339872 TMEM87BQ96K49 555 aa15.74■□□□□ 0.11
HMGB1-202ENST00000339872 COA1Q9GZY4 146 aa15.74■□□□□ 0.11
HMGB1-202ENST00000339872 ZSWIM5Q9P217 1185 aa15.74■□□□□ 0.11
HMGB1-202ENST00000339872 ANAPC4Q9UJX5 808 aa15.74■□□□□ 0.11
HMGB1-202ENST00000339872 PTPDC1A2A3K4 754 aa15.74■□□□□ 0.11
HMGB1-202ENST00000339872 CTDNEP1O95476 244 aa15.74■□□□□ 0.11
HMGB1-202ENST00000339872 RAB11FIP4Q86YS3 637 aa15.74■□□□□ 0.11
HMGB1-202ENST00000339872 SMARCC2Q8TAQ2 1214 aa15.74■□□□□ 0.11
HMGB1-202ENST00000339872 NOL10Q9BSC4 688 aaKnown RBP15.74■□□□□ 0.11
HMGB1-202ENST00000339872 DCP1AQ9NPI6 582 aaPredicted RBP15.74■□□□□ 0.11
HMGB1-202ENST00000339872 MROH7-TTC4A0A0A0MT08 1334 aa15.74■□□□□ 0.11
HMGB1-202ENST00000339872 SMIM22K7EJ46 135 aa15.73■□□□□ 0.11
HMGB1-202ENST00000339872 GTF2IP78347 998 aa15.73■□□□□ 0.11
HMGB1-202ENST00000339872 SKOR2Q2VWA4 1001 aaPredicted RBP15.73■□□□□ 0.11
HMGB1-202ENST00000339872 TMEM67Q5HYA8 995 aa15.73■□□□□ 0.11
HMGB1-202ENST00000339872 CTR9Q6PD62 1173 aa15.73■□□□□ 0.11
HMGB1-202ENST00000339872 FAM184AQ8NB25 1140 aa15.73■□□□□ 0.11
HMGB1-202ENST00000339872 TBC1D22AQ8WUA7 517 aa15.73■□□□□ 0.11
HMGB1-202ENST00000339872 FBXW7Q969H0 707 aa15.73■□□□□ 0.11
HMGB1-202ENST00000339872 ATP8A2Q9NTI2 1148 aa15.73■□□□□ 0.11
HMGB1-202ENST00000339872 ZNF219Q9P2Y4 722 aaPredicted RBP15.73■□□□□ 0.11
HMGB1-202ENST00000339872 NAV1Q8NEY1 1877 aa15.73■□□□□ 0.11
HMGB1-202ENST00000339872 USP17L12C9JPN9 530 aa15.73■□□□□ 0.11
HMGB1-202ENST00000339872 USP17L21D6R901 530 aa15.73■□□□□ 0.11
HMGB1-202ENST00000339872 PRPF40AO75400 957 aaKnown RBP15.73■□□□□ 0.11
HMGB1-202ENST00000339872 LDHCP07864 332 aa15.73■□□□□ 0.11
HMGB1-202ENST00000339872 PDIA4P13667 645 aaKnown RBP15.73■□□□□ 0.11
HMGB1-202ENST00000339872 CDC37L1Q7L3B6 337 aa15.73■□□□□ 0.11
HMGB1-202ENST00000339872 CHMP4CQ96CF2 233 aa15.73■□□□□ 0.11
HMGB1-202ENST00000339872 GZF1Q9H116 711 aaPredicted RBP15.73■□□□□ 0.11
HMGB1-202ENST00000339872 LMBRD1Q9NUN5 540 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms