RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 LY9Q9HBG7 655 aa17.33■□□□□ 0.37
CLCNKA-201ENST00000331433 SLC4A4Q9Y6R1 1079 aa17.33■□□□□ 0.37
CLCNKA-201ENST00000331433 BCL9LQ86UU0 1499 aa17.33■□□□□ 0.36
CLCNKA-201ENST00000331433 GYG1P46976 350 aa17.33■□□□□ 0.36
CLCNKA-201ENST00000331433 TMEM67Q5HYA8 995 aa17.33■□□□□ 0.36
CLCNKA-201ENST00000331433 CLEC4GQ6UXB4 293 aa17.33■□□□□ 0.36
CLCNKA-201ENST00000331433 ZSWIM5Q9P217 1185 aa17.33■□□□□ 0.36
CLCNKA-201ENST00000331433 BCORQ6W2J9 1755 aa17.33■□□□□ 0.36
CLCNKA-201ENST00000331433 TDO2P48775 406 aa17.32■□□□□ 0.36
CLCNKA-201ENST00000331433 KIAA2012Q0VF49 1180 aa17.32■□□□□ 0.36
CLCNKA-201ENST00000331433 MYSM1Q5VVJ2 828 aa17.32■□□□□ 0.36
CLCNKA-201ENST00000331433 LINC00301Q8NCQ3 95 aa17.32■□□□□ 0.36
CLCNKA-201ENST00000331433 ENGASEQ8NFI3 743 aa17.32■□□□□ 0.36
CLCNKA-201ENST00000331433 TMEM87BQ96K49 555 aa17.32■□□□□ 0.36
CLCNKA-201ENST00000331433 CHD4Q14839 1912 aa17.32■□□□□ 0.36
CLCNKA-201ENST00000331433 ZBTB43O43298 467 aa17.32■□□□□ 0.36
CLCNKA-201ENST00000331433 ZNF165P49910 485 aa17.32■□□□□ 0.36
CLCNKA-201ENST00000331433 KIF23Q02241 960 aaPredicted RBP17.32■□□□□ 0.36
CLCNKA-201ENST00000331433 FAM160A1Q05DH4 1040 aa17.32■□□□□ 0.36
CLCNKA-201ENST00000331433 STK38Q15208 465 aa17.32■□□□□ 0.36
CLCNKA-201ENST00000331433 ADGRA1Q86SQ6 560 aa17.32■□□□□ 0.36
CLCNKA-201ENST00000331433 ANKRD18AQ8IVF6 992 aa17.32■□□□□ 0.36
CLCNKA-201ENST00000331433 C8orf37Q96NL8 207 aa17.32■□□□□ 0.36
CLCNKA-201ENST00000331433 ABCF2Q9UG63 623 aa17.32■□□□□ 0.36
CLCNKA-201ENST00000331433 A0A087WWV3 80 aa17.31■□□□□ 0.36
CLCNKA-201ENST00000331433 UBAP1LF5GYI3 381 aa17.31■□□□□ 0.36
CLCNKA-201ENST00000331433 KINO60870 393 aaKnown RBP17.31■□□□□ 0.36
CLCNKA-201ENST00000331433 RRP12Q5JTH9 1297 aaKnown RBP17.31■□□□□ 0.36
CLCNKA-201ENST00000331433 AKNAD1Q5T1N1 836 aa17.31■□□□□ 0.36
CLCNKA-201ENST00000331433 ALG1Q9BT22 464 aa17.31■□□□□ 0.36
CLCNKA-201ENST00000331433 IFIT3O14879 490 aaKnown RBP17.31■□□□□ 0.36
CLCNKA-201ENST00000331433 BRAPQ7Z569 592 aa17.31■□□□□ 0.36
CLCNKA-201ENST00000331433 ERCC4Q92889 916 aaPredicted RBP17.31■□□□□ 0.36
CLCNKA-201ENST00000331433 TOMM22Q9NS69 142 aa17.31■□□□□ 0.36
CLCNKA-201ENST00000331433 A0A1B0GVL5 298 aa17.3■□□□□ 0.36
CLCNKA-201ENST00000331433 GOLGA8AA7E2F4 631 aa17.3■□□□□ 0.36
CLCNKA-201ENST00000331433 UBE2Q2LH0YL09 131 aa17.3■□□□□ 0.36
CLCNKA-201ENST00000331433 SF3A1Q15459 793 aaKnown RBP17.3■□□□□ 0.36
CLCNKA-201ENST00000331433 TBC1D9BQ66K14 1250 aa17.3■□□□□ 0.36
CLCNKA-201ENST00000331433 MFSD6Q6ZSS7 791 aa17.3■□□□□ 0.36
CLCNKA-201ENST00000331433 SGMS1Q86VZ5 419 aa17.3■□□□□ 0.36
CLCNKA-201ENST00000331433 C17orf53Q8N3J3 647 aaPredicted RBP17.3■□□□□ 0.36
CLCNKA-201ENST00000331433 MRPS27Q92552 414 aaKnown RBP17.3■□□□□ 0.36
CLCNKA-201ENST00000331433 NACAP1Q9BZK3 213 aa17.3■□□□□ 0.36
CLCNKA-201ENST00000331433 FAM217BQ9NTX9 383 aaPredicted RBP17.3■□□□□ 0.36
CLCNKA-201ENST00000331433 R3HCC1Q9Y3T6 440 aaKnown RBP17.3■□□□□ 0.36
CLCNKA-201ENST00000331433 PNPLA7Q6ZV29 1317 aa17.3■□□□□ 0.36
CLCNKA-201ENST00000331433 RANBP6O60518 1105 aaKnown RBP17.3■□□□□ 0.36
CLCNKA-201ENST00000331433 CDKL5O76039 1030 aa17.3■□□□□ 0.36
CLCNKA-201ENST00000331433 CYP7A1P22680 504 aa17.3■□□□□ 0.36
CLCNKA-201ENST00000331433 GTF2E1P29083 439 aaPredicted RBP17.3■□□□□ 0.36
CLCNKA-201ENST00000331433 ADALQ6DHV7 355 aa17.3■□□□□ 0.36
CLCNKA-201ENST00000331433 C11orf57Q6ZUT1 292 aaPredicted RBP17.3■□□□□ 0.36
CLCNKA-201ENST00000331433 ZKSCAN3Q9BRR0 538 aa17.3■□□□□ 0.36
CLCNKA-201ENST00000331433 POLR3EQ9NVU0 708 aa17.3■□□□□ 0.36
CLCNKA-201ENST00000331433 COL1A1P02452 1464 aaPredicted RBP17.3■□□□□ 0.36
CLCNKA-201ENST00000331433 GNAT2P19087 354 aa17.29■□□□□ 0.36
CLCNKA-201ENST00000331433 SF3B3Q15393 1217 aaKnown RBP17.29■□□□□ 0.36
CLCNKA-201ENST00000331433 NTRK3Q16288 839 aa17.29■□□□□ 0.36
CLCNKA-201ENST00000331433 SYNE3Q6ZMZ3 975 aa17.29■□□□□ 0.36
CLCNKA-201ENST00000331433 TDRD7Q8NHU6 1098 aaKnown RBP17.29■□□□□ 0.36
CLCNKA-201ENST00000331433 CELF1Q92879 486 aaKnown RBP17.29■□□□□ 0.36
CLCNKA-201ENST00000331433 NGLY1Q96IV0 654 aa17.29■□□□□ 0.36
CLCNKA-201ENST00000331433 ZNF804BA4D1E1 1349 aa17.29■□□□□ 0.36
CLCNKA-201ENST00000331433 SPTLC2O15270 562 aa17.29■□□□□ 0.36
CLCNKA-201ENST00000331433 CTAGE5O15320 804 aa17.29■□□□□ 0.36
CLCNKA-201ENST00000331433 TOM1O60784 492 aa17.29■□□□□ 0.36
CLCNKA-201ENST00000331433 KRT40Q6A162 431 aa17.29■□□□□ 0.36
CLCNKA-201ENST00000331433 CPLX2Q6PUV4 134 aaKnown RBP17.29■□□□□ 0.36
CLCNKA-201ENST00000331433 KCNG4Q8TDN1 519 aa17.29■□□□□ 0.36
CLCNKA-201ENST00000331433 SDR42E1Q8WUS8 393 aa17.29■□□□□ 0.36
CLCNKA-201ENST00000331433 CNNM2Q9H8M5 875 aa17.29■□□□□ 0.36
CLCNKA-201ENST00000331433 BCL2L12Q9HB09 334 aa17.29■□□□□ 0.36
CLCNKA-201ENST00000331433 RAI14Q9P0K7 980 aa17.29■□□□□ 0.36
CLCNKA-201ENST00000331433 SLC12A7Q9Y666 1083 aa17.29■□□□□ 0.36
CLCNKA-201ENST00000331433 LIFRP42702 1097 aa17.28■□□□□ 0.36
CLCNKA-201ENST00000331433 NDUFA8P51970 172 aa17.28■□□□□ 0.36
CLCNKA-201ENST00000331433 VPS37DQ86XT2 251 aa17.28■□□□□ 0.36
CLCNKA-201ENST00000331433 FMR1NBQ8N0W7 255 aaPredicted RBP17.28■□□□□ 0.36
CLCNKA-201ENST00000331433 KRT23Q9C075 422 aa17.28■□□□□ 0.36
CLCNKA-201ENST00000331433 BSDC1Q9NW68 430 aaPredicted RBP17.28■□□□□ 0.36
CLCNKA-201ENST00000331433 SRP68Q9UHB9 627 aaKnown RBP17.28■□□□□ 0.36
CLCNKA-201ENST00000331433 MINPP1Q9UNW1 487 aa17.28■□□□□ 0.36
CLCNKA-201ENST00000331433 TIAM2Q8IVF5 1701 aa17.28■□□□□ 0.36
CLCNKA-201ENST00000331433 CCDC69A6NI79 296 aa17.28■□□□□ 0.36
CLCNKA-201ENST00000331433 YEATS4O95619 227 aa17.28■□□□□ 0.36
CLCNKA-201ENST00000331433 IARSP41252 1262 aaKnown RBP17.28■□□□□ 0.36
CLCNKA-201ENST00000331433 CCDC24Q8N4L8 307 aa17.28■□□□□ 0.36
CLCNKA-201ENST00000331433 STAG1Q8WVM7 1258 aa17.28■□□□□ 0.36
CLCNKA-201ENST00000331433 KCNF1Q9H3M0 494 aa17.28■□□□□ 0.36
CLCNKA-201ENST00000331433 CASZ1Q86V15 1759 aa17.28■□□□□ 0.36
CLCNKA-201ENST00000331433 A0A1W2PQ27 194 aa17.27■□□□□ 0.36
CLCNKA-201ENST00000331433 A0A1W2PQ64 194 aa17.27■□□□□ 0.36
CLCNKA-201ENST00000331433 A0A1W2PQD8 194 aa17.27■□□□□ 0.36
CLCNKA-201ENST00000331433 SMIM22K7EJ46 135 aa17.27■□□□□ 0.36
CLCNKA-201ENST00000331433 ANO1Q5XXA6 986 aa17.27■□□□□ 0.36
CLCNKA-201ENST00000331433 PIBF1Q8WXW3 757 aa17.27■□□□□ 0.36
CLCNKA-201ENST00000331433 ECM29Q5VYK3 1845 aa17.27■□□□□ 0.35
CLCNKA-201ENST00000331433 UBE4AQ14139 1066 aa17.27■□□□□ 0.35
CLCNKA-201ENST00000331433 STX1AQ16623 288 aa17.27■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms