RNA–Protein interactions for RNA: ENST00000322213.8

SMC1A-201, Transcript of structural maintenance of chromosomes 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC1A, Length 9,784 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-201ENST00000322213 TBC1D5Q92609 795 aa7.92□□□□□ -1.14
SMC1A-201ENST00000322213 LRRC45Q96CN5 670 aa7.92□□□□□ -1.14
SMC1A-201ENST00000322213 ORC3Q9UBD5 711 aaPredicted RBP7.92□□□□□ -1.14
SMC1A-201ENST00000322213 SAR1BQ9Y6B6 198 aa7.92□□□□□ -1.14
SMC1A-201ENST00000322213 NLRP12P59046 1061 aa7.92□□□□□ -1.14
SMC1A-201ENST00000322213 CREB3L3Q68CJ9 461 aa7.92□□□□□ -1.14
SMC1A-201ENST00000322213 CCDC62Q6P9F0 684 aa7.92□□□□□ -1.14
SMC1A-201ENST00000322213 LARP1Q6PKG0 1096 aaKnown RBP7.92□□□□□ -1.14
SMC1A-201ENST00000322213 MRPL50Q8N5N7 158 aaKnown RBP7.92□□□□□ -1.14
SMC1A-201ENST00000322213 USP32Q8NFA0 1604 aa7.92□□□□□ -1.14
SMC1A-201ENST00000322213 NCOA7Q8NI08 942 aa7.92□□□□□ -1.14
SMC1A-201ENST00000322213 DDX54Q8TDD1 881 aaKnown RBP7.92□□□□□ -1.14
SMC1A-201ENST00000322213 ZBTB9Q96C00 473 aa7.92□□□□□ -1.14
SMC1A-201ENST00000322213 CCDC77Q9BR77 488 aa7.92□□□□□ -1.14
SMC1A-201ENST00000322213 USH1CQ9Y6N9 552 aa7.92□□□□□ -1.14
SMC1A-201ENST00000322213 ZNF213O14771 459 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 RAD21O60216 631 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 VIMP08670 466 aaKnown RBP7.91□□□□□ -1.14
SMC1A-201ENST00000322213 TRIM68Q6AZZ1 485 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 BCAS4Q8TDM0 211 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 TRAPPC8Q9Y2L5 1435 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 NUTM2FA1L443 756 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 EIF3CLB5ME19 914 aaKnown RBP7.91□□□□□ -1.14
SMC1A-201ENST00000322213 LRMPQ12912 555 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 CFAP221Q4G0U5 840 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 CATIPQ7Z7H3 387 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 EIF3CQ99613 913 aaKnown RBP7.91□□□□□ -1.14
SMC1A-201ENST00000322213 TPX2Q9ULW0 747 aaKnown RBP7.91□□□□□ -1.14
SMC1A-201ENST00000322213 CHD1O14646 1710 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 MARCKSP29966 332 aaPredicted RBP7.91□□□□□ -1.14
SMC1A-201ENST00000322213 PSME1Q06323 249 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 MCM10Q7L590 875 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 PPP1R42Q7Z4L9 355 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 TBC1D31Q96DN5 1066 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 PDLIM2Q96JY6 352 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 THUMPD2Q9BTF0 503 aaKnown RBP7.91□□□□□ -1.14
SMC1A-201ENST00000322213 MACROD2A1Z1Q3 448 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 HIP1RO75146 1068 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 ZNF202O95125 648 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 CCT5P48643 541 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 PLEKHO1Q53GL0 409 aaPredicted RBP7.91□□□□□ -1.14
SMC1A-201ENST00000322213 IQCA1Q86XH1 822 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 IQCGQ9H095 443 aaKnown RBP7.91□□□□□ -1.14
SMC1A-201ENST00000322213 TCP11L1Q9NUJ3 509 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 MYO1AQ9UBC5 1043 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 ZRANB1Q9UGI0 708 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 TTC36A6NLP5 189 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 G3V3G9 751 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 DCAF8Q5TAQ9 597 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 CLEC17AQ6ZS10 378 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 PPP1R12CQ9BZL4 782 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 ZHX3Q9H4I2 956 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 PYCARDQ9ULZ3 195 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 ETF1P62495 437 aaKnown RBP7.91□□□□□ -1.14
SMC1A-201ENST00000322213 NBPF9Q3BBW0 867 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 CALML4Q96GE6 196 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 DDX27Q96GQ7 796 aaKnown RBP7.91□□□□□ -1.14
SMC1A-201ENST00000322213 NAPBQ9H115 298 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 RNF41Q9H4P4 317 aaPredicted RBP7.91□□□□□ -1.14
SMC1A-201ENST00000322213 NKIRAS1Q9NYS0 192 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 RNF40O75150 1001 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 KRT13P13646 458 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 KRI1Q8N9T8 703 aaKnown RBP7.91□□□□□ -1.14
SMC1A-201ENST00000322213 IQCDQ96DY2 449 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 SHPRHQ149N8 1683 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 CETN1Q12798 172 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 PNMA8AQ86V59 439 aaPredicted RBP7.91□□□□□ -1.14
SMC1A-201ENST00000322213 NOX5Q96PH1 765 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 CNNM1Q9NRU3 951 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 IRAK4Q9NWZ3 460 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 CABP1Q9NZU7 370 aa7.91□□□□□ -1.14
SMC1A-201ENST00000322213 CCDC51Q96ER9 411 aa7.9□□□□□ -1.14
SMC1A-201ENST00000322213 XPO4Q9C0E2 1151 aaKnown RBP7.9□□□□□ -1.14
SMC1A-201ENST00000322213 BICC1Q9H694 974 aaKnown RBP7.9□□□□□ -1.14
SMC1A-201ENST00000322213 STRN4Q9NRL3 753 aa7.9□□□□□ -1.14
SMC1A-201ENST00000322213 GNGT1P63211 74 aa7.9□□□□□ -1.14
SMC1A-201ENST00000322213 MLECQ14165 292 aa7.9□□□□□ -1.14
SMC1A-201ENST00000322213 MUM1L1Q5H9M0 696 aa7.9□□□□□ -1.14
SMC1A-201ENST00000322213 SOGA3Q5TF21 947 aa7.9□□□□□ -1.14
SMC1A-201ENST00000322213 MICU3Q86XE3 530 aa7.9□□□□□ -1.14
SMC1A-201ENST00000322213 ANKRD7Q92527 254 aa7.9□□□□□ -1.14
SMC1A-201ENST00000322213 LARSQ9P2J5 1176 aaKnown RBP7.9□□□□□ -1.14
SMC1A-201ENST00000322213 PPP2R2CQ9Y2T4 447 aa7.9□□□□□ -1.14
SMC1A-201ENST00000322213 SPAG17Q6Q759 2223 aa7.9□□□□□ -1.14
SMC1A-201ENST00000322213 GRIN2AQ12879 1464 aa7.9□□□□□ -1.14
SMC1A-201ENST00000322213 FRMD3A2A2Y4 597 aa7.9□□□□□ -1.14
SMC1A-201ENST00000322213 IARSP41252 1262 aaKnown RBP7.9□□□□□ -1.14
SMC1A-201ENST00000322213 LRRC23Q53EV4 343 aaPredicted RBP7.9□□□□□ -1.14
SMC1A-201ENST00000322213 LRRC27Q9C0I9 530 aa7.9□□□□□ -1.14
SMC1A-201ENST00000322213 TRPM2O94759 1503 aa7.9□□□□□ -1.14
SMC1A-201ENST00000322213 ACTN4O43707 911 aaKnown RBP7.9□□□□□ -1.14
SMC1A-201ENST00000322213 PKP1Q13835 747 aa7.9□□□□□ -1.14
SMC1A-201ENST00000322213 RRAGBQ5VZM2 374 aa7.9□□□□□ -1.14
SMC1A-201ENST00000322213 CDC37L1Q7L3B6 337 aa7.9□□□□□ -1.14
SMC1A-201ENST00000322213 TMEM87AQ8NBN3 555 aa7.9□□□□□ -1.14
SMC1A-201ENST00000322213 CHD5Q8TDI0 1954 aa7.9□□□□□ -1.15
SMC1A-201ENST00000322213 CYP2C19P33261 490 aa7.9□□□□□ -1.15
SMC1A-201ENST00000322213 CCT6AP40227 531 aaKnown RBP7.9□□□□□ -1.15
SMC1A-201ENST00000322213 RRS1Q15050 365 aaKnown RBP7.9□□□□□ -1.15
SMC1A-201ENST00000322213 TTF1Q15361 905 aaPredicted RBP7.9□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms