RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 PRKAB2O43741 272 aa21.88■■□□□ 1.09
HMGA1-201ENST00000311487 SPDYE6P0CI01 402 aa21.88■■□□□ 1.09
HMGA1-201ENST00000311487 SLC4A8Q2Y0W8 1093 aa21.88■■□□□ 1.09
HMGA1-201ENST00000311487 ZMYM1Q5SVZ6 1142 aa21.88■■□□□ 1.09
HMGA1-201ENST00000311487 HHIPL2Q6UWX4 724 aa21.88■■□□□ 1.09
HMGA1-201ENST00000311487 ZDHHC15Q96MV8 337 aa21.88■■□□□ 1.09
HMGA1-201ENST00000311487 USP40Q9NVE5 1235 aa21.88■■□□□ 1.09
HMGA1-201ENST00000311487 CDC42EP5Q6NZY7 148 aa21.87■■□□□ 1.09
HMGA1-201ENST00000311487 APPBP2Q92624 585 aa21.87■■□□□ 1.09
HMGA1-201ENST00000311487 AIDAQ96BJ3 306 aa21.87■■□□□ 1.09
HMGA1-201ENST00000311487 GPR75-ASB3A0A0A6YYF3 556 aa21.86■■□□□ 1.09
HMGA1-201ENST00000311487 LDHCP07864 332 aa21.86■■□□□ 1.09
HMGA1-201ENST00000311487 ZFYP08048 801 aaPredicted RBP21.86■■□□□ 1.09
HMGA1-201ENST00000311487 YY1P25490 414 aa21.86■■□□□ 1.09
HMGA1-201ENST00000311487 DLK2Q6UY11 383 aa21.86■■□□□ 1.09
HMGA1-201ENST00000311487 VEZTQ9HBM0 779 aa21.86■■□□□ 1.09
HMGA1-201ENST00000311487 GAKO14976 1311 aa21.86■■□□□ 1.09
HMGA1-201ENST00000311487 CDC45O75419 566 aa21.86■■□□□ 1.09
HMGA1-201ENST00000311487 PICALMQ13492 652 aa21.86■■□□□ 1.09
HMGA1-201ENST00000311487 VPS53Q5VIR6 699 aa21.86■■□□□ 1.09
HMGA1-201ENST00000311487 SLF2Q8IX21 1173 aa21.86■■□□□ 1.09
HMGA1-201ENST00000311487 SDR42E1Q8WUS8 393 aa21.86■■□□□ 1.09
HMGA1-201ENST00000311487 RIOK1Q9BRS2 568 aaKnown RBP21.86■■□□□ 1.09
HMGA1-201ENST00000311487 TAF1DQ9H5J8 278 aaPredicted RBP21.86■■□□□ 1.09
HMGA1-201ENST00000311487 ADARB2Q9NS39 739 aaKnown RBP21.86■■□□□ 1.09
HMGA1-201ENST00000311487 GPAA1O43292 621 aa21.85■■□□□ 1.09
HMGA1-201ENST00000311487 TCP10Q12799 353 aa21.85■■□□□ 1.09
HMGA1-201ENST00000311487 NFIAQ12857 509 aa21.85■■□□□ 1.09
HMGA1-201ENST00000311487 NOL10Q9BSC4 688 aaKnown RBP21.85■■□□□ 1.09
HMGA1-201ENST00000311487 TCP10L2B9ZVM9 353 aa21.84■■□□□ 1.09
HMGA1-201ENST00000311487 LRRFIP1Q32MZ4 808 aaKnown RBP21.84■■□□□ 1.09
HMGA1-201ENST00000311487 MCMDC2Q4G0Z9 681 aa21.84■■□□□ 1.09
HMGA1-201ENST00000311487 FAM163AQ96GL9 167 aaPredicted RBP21.84■■□□□ 1.09
HMGA1-201ENST00000311487 BACH2Q9BYV9 841 aa21.84■■□□□ 1.09
HMGA1-201ENST00000311487 RHBDL3P58872 404 aa21.84■■□□□ 1.09
HMGA1-201ENST00000311487 HDLBPQ00341 1268 aaKnown RBP21.84■■□□□ 1.09
HMGA1-201ENST00000311487 ANGEL2Q5VTE6 544 aaKnown RBP21.84■■□□□ 1.09
HMGA1-201ENST00000311487 TGFBRAP1Q8WUH2 860 aa21.84■■□□□ 1.09
HMGA1-201ENST00000311487 MAST2Q6P0Q8 1798 aa21.83■■□□□ 1.09
HMGA1-201ENST00000311487 BAG3O95817 575 aa21.83■■□□□ 1.09
HMGA1-201ENST00000311487 MRIQ9BWK5 157 aa21.83■■□□□ 1.09
HMGA1-201ENST00000311487 ZNF70Q9UC06 446 aaPredicted RBP21.83■■□□□ 1.09
HMGA1-201ENST00000311487 CLEC11AQ9Y240 323 aa21.83■■□□□ 1.09
HMGA1-201ENST00000311487 IQCA1LA6NCM1 817 aa21.82■■□□□ 1.08
HMGA1-201ENST00000311487 VEGFAP15692 232 aaPredicted RBP21.82■■□□□ 1.08
HMGA1-201ENST00000311487 PRAMEF18Q5VWM3 479 aa21.82■■□□□ 1.08
HMGA1-201ENST00000311487 MAPKAPK5Q8IW41 473 aa21.82■■□□□ 1.08
HMGA1-201ENST00000311487 ZFPM1Q8IX07 1006 aa21.82■■□□□ 1.08
HMGA1-201ENST00000311487 TEX11Q8IYF3 940 aa21.82■■□□□ 1.08
HMGA1-201ENST00000311487 ZBED3Q96IU2 234 aaPredicted RBP21.82■■□□□ 1.08
HMGA1-201ENST00000311487 STRBPQ96SI9 672 aaKnown RBP21.82■■□□□ 1.08
HMGA1-201ENST00000311487 GPBP1L1Q9HC44 474 aaPredicted RBP21.82■■□□□ 1.08
HMGA1-201ENST00000311487 SLC4A4Q9Y6R1 1079 aa21.82■■□□□ 1.08
HMGA1-201ENST00000311487 APPP05067 770 aa21.82■■□□□ 1.08
HMGA1-201ENST00000311487 DDX4Q9NQI0 724 aaKnown RBP21.82■■□□□ 1.08
HMGA1-201ENST00000311487 HELLSQ9NRZ9 838 aa21.82■■□□□ 1.08
HMGA1-201ENST00000311487 GGA3Q9NZ52 723 aa21.82■■□□□ 1.08
HMGA1-201ENST00000311487 HIP1O00291 1037 aa21.81■■□□□ 1.08
HMGA1-201ENST00000311487 ESYT1Q9BSJ8 1104 aa21.81■■□□□ 1.08
HMGA1-201ENST00000311487 WDR90Q96KV7 1748 aa21.8■■□□□ 1.08
HMGA1-201ENST00000311487 MYO1BO43795 1136 aa21.8■■□□□ 1.08
HMGA1-201ENST00000311487 EVX2Q03828 476 aa21.8■■□□□ 1.08
HMGA1-201ENST00000311487 MTMR14Q8NCE2 650 aa21.8■■□□□ 1.08
HMGA1-201ENST00000311487 SAP30BPQ9UHR5 308 aaKnown RBP21.8■■□□□ 1.08
HMGA1-201ENST00000311487 WDHD1O75717 1129 aaPredicted RBP21.8■■□□□ 1.08
HMGA1-201ENST00000311487 SEC24BO95487 1268 aa21.8■■□□□ 1.08
HMGA1-201ENST00000311487 USP5P45974 858 aa21.8■■□□□ 1.08
HMGA1-201ENST00000311487 CDAN1Q8IWY9 1227 aa21.8■■□□□ 1.08
HMGA1-201ENST00000311487 SMIM22K7EJ46 135 aa21.79■■□□□ 1.08
HMGA1-201ENST00000311487 SGSM2O43147 1006 aa21.79■■□□□ 1.08
HMGA1-201ENST00000311487 SLURP2P0DP57 97 aa21.79■■□□□ 1.08
HMGA1-201ENST00000311487 PPP4CP60510 307 aa21.79■■□□□ 1.08
HMGA1-201ENST00000311487 SPDYE2Q495Y8 402 aa21.79■■□□□ 1.08
HMGA1-201ENST00000311487 CASC1Q6TDU7 716 aa21.79■■□□□ 1.08
HMGA1-201ENST00000311487 STK11IPQ8N1F8 1099 aa21.79■■□□□ 1.08
HMGA1-201ENST00000311487 RFX7Q2KHR2 1363 aa21.79■■□□□ 1.08
HMGA1-201ENST00000311487 CCDC171Q6TFL3 1326 aa21.78■■□□□ 1.08
HMGA1-201ENST00000311487 FOXP2O15409 715 aa21.78■■□□□ 1.08
HMGA1-201ENST00000311487 PTH1RQ03431 593 aa21.78■■□□□ 1.08
HMGA1-201ENST00000311487 C8orf34Q49A92 452 aa21.78■■□□□ 1.08
HMGA1-201ENST00000311487 MAP1SQ66K74 1059 aaPredicted RBP21.78■■□□□ 1.08
HMGA1-201ENST00000311487 USP50Q70EL3 339 aaPredicted RBP21.78■■□□□ 1.08
HMGA1-201ENST00000311487 RUFY2Q8WXA3 655 aa21.78■■□□□ 1.08
HMGA1-201ENST00000311487 CRNKL1Q9BZJ0 848 aaKnown RBP21.78■■□□□ 1.08
HMGA1-201ENST00000311487 TMEM39BQ9GZU3 492 aa21.78■■□□□ 1.08
HMGA1-201ENST00000311487 FAM198AQ9UFP1 575 aa21.78■■□□□ 1.08
HMGA1-201ENST00000311487 CYP2D7A0A087X1C5 515 aa21.77■■□□□ 1.08
HMGA1-201ENST00000311487 GSG1L2A8MUP6 293 aa21.77■■□□□ 1.08
HMGA1-201ENST00000311487 ANO2Q9NQ90 1003 aa21.77■■□□□ 1.08
HMGA1-201ENST00000311487 PALD1Q9ULE6 856 aa21.77■■□□□ 1.08
HMGA1-201ENST00000311487 POLR2AP24928 1970 aaKnown RBP21.77■■□□□ 1.08
HMGA1-201ENST00000311487 SCN4AP35499 1836 aa21.77■■□□□ 1.08
HMGA1-201ENST00000311487 ADM5C9JUS6 153 aa21.76■■□□□ 1.07
HMGA1-201ENST00000311487 HSPD1P10809 573 aaKnown RBP21.76■■□□□ 1.07
HMGA1-201ENST00000311487 FMR1Q06787 632 aaKnown RBP eCLIP21.76■■□□□ 1.07
HMGA1-201ENST00000311487 ZNF784Q8NCA9 323 aaPredicted RBP21.76■■□□□ 1.07
HMGA1-201ENST00000311487 EPB41L4AQ9HCS5 686 aaPredicted RBP21.76■■□□□ 1.07
HMGA1-201ENST00000311487 FLT1P17948 1338 aa21.76■■□□□ 1.07
HMGA1-201ENST00000311487 PNMA8AQ86V59 439 aaPredicted RBP21.76■■□□□ 1.07
HMGA1-201ENST00000311487 TMOD2Q9NZR1 351 aa21.76■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms