RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 SPG7Q9UQ90 795 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 INPP5BP32019 993 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 ZNF75DP51815 510 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 APBB1IPQ7Z5R6 666 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-201ENST00000303395 EPSTI1Q96J88 318 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 TMEM87BQ96K49 555 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 Q9H521 79 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 PDCD2Q16342 344 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-201ENST00000303395 KIAA0753Q2KHM9 967 aa5.88□□□□□ -1.47
SCN1A-201ENST00000303395 CYP26C1Q6V0L0 522 aa5.88□□□□□ -1.47
SCN1A-201ENST00000303395 TRIM58Q8NG06 486 aa5.88□□□□□ -1.47
SCN1A-201ENST00000303395 ERMNQ8TAM6 284 aa5.88□□□□□ -1.47
SCN1A-201ENST00000303395 A2MP01023 1474 aa5.88□□□□□ -1.47
SCN1A-201ENST00000303395 DENND4BO75064 1496 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-201ENST00000303395 ZBTB24O43167 697 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-201ENST00000303395 ATP2A2P16615 1042 aaKnown RBP5.88□□□□□ -1.47
SCN1A-201ENST00000303395 RBM5P52756 815 aaKnown RBP eCLIP5.88□□□□□ -1.47
SCN1A-201ENST00000303395 CUL4BQ13620 913 aa5.88□□□□□ -1.47
SCN1A-201ENST00000303395 PHLDB3Q6NSJ2 640 aa5.88□□□□□ -1.47
SCN1A-201ENST00000303395 USP26Q9BXU7 913 aa5.88□□□□□ -1.47
SCN1A-201ENST00000303395 CCDC69A6NI79 296 aa5.88□□□□□ -1.47
SCN1A-201ENST00000303395 EIF3CLB5ME19 914 aaKnown RBP5.88□□□□□ -1.47
SCN1A-201ENST00000303395 URI1O94763 535 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-201ENST00000303395 RAPGEF4Q8WZA2 1011 aa5.88□□□□□ -1.47
SCN1A-201ENST00000303395 EIF3CQ99613 913 aaKnown RBP5.88□□□□□ -1.47
SCN1A-201ENST00000303395 NAPGQ99747 312 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-201ENST00000303395 BZW2Q9Y6E2 419 aaKnown RBP5.88□□□□□ -1.47
SCN1A-201ENST00000303395 KIF1BO60333 1816 aa5.88□□□□□ -1.47
SCN1A-201ENST00000303395 ATP7AQ04656 1500 aa5.88□□□□□ -1.47
SCN1A-201ENST00000303395 SENP3-EIF4A1A0A087X0R7 540 aa5.88□□□□□ -1.47
SCN1A-201ENST00000303395 TARSL2A2RTX5 802 aaKnown RBP5.88□□□□□ -1.47
SCN1A-201ENST00000303395 CUTAO60888 179 aa5.88□□□□□ -1.47
SCN1A-201ENST00000303395 MAGEA9P43362 315 aa5.88□□□□□ -1.47
SCN1A-201ENST00000303395 CHMP4BP1P59074 171 aa5.88□□□□□ -1.47
SCN1A-201ENST00000303395 GNG11P61952 73 aa5.88□□□□□ -1.47
SCN1A-201ENST00000303395 IRX1P78414 480 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-201ENST00000303395 TAF7Q15545 349 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-201ENST00000303395 EDEM3Q9BZQ6 932 aa5.88□□□□□ -1.47
SCN1A-201ENST00000303395 DIS3Q9Y2L1 958 aaKnown RBP5.88□□□□□ -1.47
SCN1A-201ENST00000303395 LAD1O00515 517 aa5.88□□□□□ -1.47
SCN1A-201ENST00000303395 STAG1Q8WVM7 1258 aa5.88□□□□□ -1.47
SCN1A-201ENST00000303395 CDCA7LQ96GN5 454 aa5.88□□□□□ -1.47
SCN1A-201ENST00000303395 GOPCQ9HD26 462 aa5.88□□□□□ -1.47
SCN1A-201ENST00000303395 KCND1Q9NSA2 647 aa5.88□□□□□ -1.47
SCN1A-201ENST00000303395 CEP126Q9P2H0 1117 aa5.88□□□□□ -1.47
SCN1A-201ENST00000303395 NPATQ14207 1427 aa5.88□□□□□ -1.47
SCN1A-201ENST00000303395 CROCCQ5TZA2 2017 aa5.88□□□□□ -1.47
SCN1A-201ENST00000303395 GNAT3A8MTJ3 354 aa5.88□□□□□ -1.47
SCN1A-201ENST00000303395 ZNF131P52739 623 aa5.88□□□□□ -1.47
SCN1A-201ENST00000303395 RRS1Q15050 365 aaKnown RBP5.88□□□□□ -1.47
SCN1A-201ENST00000303395 ZNF354CQ86Y25 554 aa5.88□□□□□ -1.47
SCN1A-201ENST00000303395 LTV1Q96GA3 475 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-201ENST00000303395 GPR108Q9NPR9 543 aa5.88□□□□□ -1.47
SCN1A-201ENST00000303395 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.88□□□□□ -1.47
SCN1A-201ENST00000303395 ATXN2Q99700 1313 aaKnown RBP5.88□□□□□ -1.47
SCN1A-201ENST00000303395 BRD2P25440 801 aaKnown RBP5.87□□□□□ -1.47
SCN1A-201ENST00000303395 PLCD1P51178 756 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 MKRN3Q13064 507 aaKnown RBP5.87□□□□□ -1.47
SCN1A-201ENST00000303395 ISM2Q6H9L7 571 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 CFAP61Q8NHU2 1237 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 NCOA7Q8NI08 942 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 ATP10BO94823 1461 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 MGEA5O60502 916 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 LMNB1P20700 586 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 SSFA2P28290 1259 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 NBPF14Q5TI25 921 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 UBAC1Q9BSL1 405 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 HOMER3Q9NSC5 361 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 TCP11L1Q9NUJ3 509 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 SERPINA10Q9UK55 444 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 UBE4BO95155 1302 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 ATP11AP98196 1134 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 NNTQ13423 1086 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 TRPM1Q7Z4N2 1603 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 CCDC65Q8IXS2 484 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 IQUBQ8NA54 791 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 WHAMMQ8TF30 809 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 TFIP11Q9UBB9 837 aaKnown RBP5.87□□□□□ -1.47
SCN1A-201ENST00000303395 HECW2Q9P2P5 1572 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 SYCP2Q9BX26 1530 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 NUTM2FA1L443 756 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 KIF6Q6ZMV9 814 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 HNRNPLLQ8WVV9 542 aaKnown RBP5.87□□□□□ -1.47
SCN1A-201ENST00000303395 C16orf45Q96MC5 204 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-201ENST00000303395 RAB17Q9H0T7 212 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 MTUS1Q9ULD2 1270 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 GAS8O95995 478 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 CALCOCO2Q13137 446 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 AP1ARQ63HQ0 302 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 ZGPATQ8N5A5 531 aaKnown RBP5.87□□□□□ -1.47
SCN1A-201ENST00000303395 MSANTD4Q8NCY6 345 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 CPLX3Q8WVH0 158 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 MACROD2A1Z1Q3 448 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 ENO4A6NNW6 628 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 SYKP43405 635 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 TMED1Q13445 227 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 TRIM42Q8IWZ5 723 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 FSIP1Q8NA03 581 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 CNNM3Q8NE01 707 aa5.87□□□□□ -1.47
SCN1A-201ENST00000303395 FBXO41Q8TF61 875 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms