RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 RNF41Q9H4P4 317 aaPredicted RBP5.4□□□□□ -1.54
CSMD3-201ENST00000297405 CACNA1BQ00975 2339 aa5.4□□□□□ -1.54
CSMD3-201ENST00000297405 GIPC1O14908 333 aa5.4□□□□□ -1.54
CSMD3-201ENST00000297405 SYCP2LQ5T4T6 812 aa5.4□□□□□ -1.54
CSMD3-201ENST00000297405 PPP4R3AQ6IN85 833 aa5.4□□□□□ -1.54
CSMD3-201ENST00000297405 TMC6Q7Z403 805 aa5.4□□□□□ -1.54
CSMD3-201ENST00000297405 TMTC2Q8N394 836 aa5.4□□□□□ -1.54
CSMD3-201ENST00000297405 ARHGEF2Q92974 986 aaKnown RBP5.4□□□□□ -1.54
CSMD3-201ENST00000297405 GCC2Q8IWJ2 1684 aa5.4□□□□□ -1.54
CSMD3-201ENST00000297405 SVILO95425 2214 aa5.4□□□□□ -1.54
CSMD3-201ENST00000297405 VSIG1Q86XK7 387 aa5.4□□□□□ -1.55
CSMD3-201ENST00000297405 OPHN1O60890 802 aa5.4□□□□□ -1.55
CSMD3-201ENST00000297405 CCDC80Q76M96 950 aa5.4□□□□□ -1.55
CSMD3-201ENST00000297405 PPP4R1Q8TF05 950 aa5.4□□□□□ -1.55
CSMD3-201ENST00000297405 NOP53Q9NZM5 478 aaKnown RBP5.4□□□□□ -1.55
CSMD3-201ENST00000297405 WDR97A6NE52 1622 aa5.4□□□□□ -1.55
CSMD3-201ENST00000297405 EVCP57679 992 aa5.4□□□□□ -1.55
CSMD3-201ENST00000297405 BASP1P80723 227 aaKnown RBP5.4□□□□□ -1.55
CSMD3-201ENST00000297405 TTC5Q8N0Z6 440 aa5.4□□□□□ -1.55
CSMD3-201ENST00000297405 KIF13AQ9H1H9 1805 aa5.4□□□□□ -1.55
CSMD3-201ENST00000297405 TIAM1Q13009 1591 aa5.4□□□□□ -1.55
CSMD3-201ENST00000297405 WIZO95785 1651 aa5.4□□□□□ -1.55
CSMD3-201ENST00000297405 PHKBQ93100 1093 aa5.4□□□□□ -1.55
CSMD3-201ENST00000297405 MRFAP1L1Q96HT8 127 aa5.4□□□□□ -1.55
CSMD3-201ENST00000297405 EIF3CQ99613 913 aaKnown RBP5.4□□□□□ -1.55
CSMD3-201ENST00000297405 NAPGQ99747 312 aaPredicted RBP5.4□□□□□ -1.55
CSMD3-201ENST00000297405 EHMT1Q9H9B1 1298 aa5.4□□□□□ -1.55
CSMD3-201ENST00000297405 MSH6P52701 1360 aa5.4□□□□□ -1.55
CSMD3-201ENST00000297405 KDM4AO75164 1064 aa5.4□□□□□ -1.55
CSMD3-201ENST00000297405 APOA1P02647 267 aa5.4□□□□□ -1.55
CSMD3-201ENST00000297405 INPP1P49441 399 aa5.4□□□□□ -1.55
CSMD3-201ENST00000297405 KIF6Q6ZMV9 814 aa5.4□□□□□ -1.55
CSMD3-201ENST00000297405 TMTC1Q8IUR5 882 aa5.4□□□□□ -1.55
CSMD3-201ENST00000297405 L3MBTL2Q969R5 705 aa5.4□□□□□ -1.55
CSMD3-201ENST00000297405 CCDC42Q96M95 316 aa5.4□□□□□ -1.55
CSMD3-201ENST00000297405 STOML1Q9UBI4 398 aa5.4□□□□□ -1.55
CSMD3-201ENST00000297405 NUB1Q9Y5A7 615 aa5.4□□□□□ -1.55
CSMD3-201ENST00000297405 KRT8P05787 483 aa5.4□□□□□ -1.55
CSMD3-201ENST00000297405 HDAC4P56524 1084 aa5.4□□□□□ -1.55
CSMD3-201ENST00000297405 FKBP5Q13451 457 aaPredicted RBP5.4□□□□□ -1.55
CSMD3-201ENST00000297405 INF2Q27J81 1249 aa5.4□□□□□ -1.55
CSMD3-201ENST00000297405 PNISRQ8TF01 805 aaKnown RBP5.4□□□□□ -1.55
CSMD3-201ENST00000297405 TDRD6O60522 2096 aaKnown RBP5.39□□□□□ -1.55
CSMD3-201ENST00000297405 CARMIL1Q5VZK9 1371 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 GSTA2P09210 222 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 NLRP7Q8WX94 980 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 COG3Q96JB2 828 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 RWDD3Q9Y3V2 267 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 KRT75O95678 551 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 MMEP08473 750 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 FLOT2Q14254 428 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 BRAPQ7Z569 592 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 LEO1Q8WVC0 666 aaPredicted RBP5.39□□□□□ -1.55
CSMD3-201ENST00000297405 SIL1Q9H173 461 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 EIF3BP55884 814 aaKnown RBP5.39□□□□□ -1.55
CSMD3-201ENST00000297405 ALS2CLQ60I27 953 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 THOC2Q8NI27 1593 aaKnown RBP5.39□□□□□ -1.55
CSMD3-201ENST00000297405 CALML4Q96GE6 196 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 KIF2CQ99661 725 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 XPOTO43592 962 aaKnown RBP5.39□□□□□ -1.55
CSMD3-201ENST00000297405 PDE1CQ14123 709 aaPredicted RBP5.39□□□□□ -1.55
CSMD3-201ENST00000297405 C6orf118Q5T5N4 469 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 CCDC82Q8N4S0 544 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 RAPGEF2Q9Y4G8 1499 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 NSD2O96028 1365 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 NUP205Q92621 2012 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 RAB3GAP1Q15042 981 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 GLE1Q53GS7 698 aaKnown RBP5.39□□□□□ -1.55
CSMD3-201ENST00000297405 BSDC1Q9NW68 430 aaPredicted RBP5.39□□□□□ -1.55
CSMD3-201ENST00000297405 XPO1O14980 1071 aaKnown RBP5.39□□□□□ -1.55
CSMD3-201ENST00000297405 CLTAP09496 248 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 KRT2P35908 639 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 SPC25Q9HBM1 224 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 RASSF10A6NK89 507 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 C8orf74Q6P047 294 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 CTAGE3PQ8IX95 158 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 IWS1Q96ST2 819 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 RRP15Q9Y3B9 282 aaKnown RBP5.39□□□□□ -1.55
CSMD3-201ENST00000297405 CUL3Q13618 768 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 DTX3LQ8TDB6 740 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 ABCF3Q9NUQ8 709 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 MBD2Q9UBB5 411 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 CAPN7Q9Y6W3 813 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 MAP2P11137 1827 aaKnown RBP5.39□□□□□ -1.55
CSMD3-201ENST00000297405 CCDC78A2IDD5 438 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 NDE1Q9NXR1 346 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 MYO7BQ6PIF6 2116 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 CYP26C1Q6V0L0 522 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 TEX11Q8IYF3 940 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 FAM96AQ9H5X1 160 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 SMARCA4P51532 1647 aa5.39□□□□□ -1.55
CSMD3-201ENST00000297405 ALDH1L1O75891 902 aa5.38□□□□□ -1.55
CSMD3-201ENST00000297405 GTF2E1P29083 439 aaPredicted RBP5.38□□□□□ -1.55
CSMD3-201ENST00000297405 SLC30A9Q6PML9 568 aa5.38□□□□□ -1.55
CSMD3-201ENST00000297405 CCDC186Q7Z3E2 898 aa5.38□□□□□ -1.55
CSMD3-201ENST00000297405 GAS2L2Q8NHY3 880 aa5.38□□□□□ -1.55
CSMD3-201ENST00000297405 HOOK2Q96ED9 719 aa5.38□□□□□ -1.55
CSMD3-201ENST00000297405 BAG1Q99933 345 aaPredicted RBP5.38□□□□□ -1.55
CSMD3-201ENST00000297405 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP5.38□□□□□ -1.55
CSMD3-201ENST00000297405 CFAP43Q8NDM7 1665 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms