RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 LCORLQ8N3X6 602 aa21.38■■□□□ 1.01
SHKBP1-201ENST00000291842 ALG1Q9BT22 464 aa21.38■■□□□ 1.01
SHKBP1-201ENST00000291842 DDX60Q8IY21 1712 aaKnown RBP21.38■■□□□ 1.01
SHKBP1-201ENST00000291842 RRP12Q5JTH9 1297 aaKnown RBP21.37■■□□□ 1.01
SHKBP1-201ENST00000291842 ADALQ6DHV7 355 aa21.37■■□□□ 1.01
SHKBP1-201ENST00000291842 TOMM22Q9NS69 142 aa21.37■■□□□ 1.01
SHKBP1-201ENST00000291842 COL22A1Q8NFW1 1626 aaPredicted RBP21.37■■□□□ 1.01
SHKBP1-201ENST00000291842 GSG1L2A8MUP6 293 aa21.37■■□□□ 1.01
SHKBP1-201ENST00000291842 GOLGA6L6A8MZA4 724 aa21.37■■□□□ 1.01
SHKBP1-201ENST00000291842 CTAGE5O15320 804 aa21.37■■□□□ 1.01
SHKBP1-201ENST00000291842 ZNF75DP51815 510 aa21.37■■□□□ 1.01
SHKBP1-201ENST00000291842 SYNE3Q6ZMZ3 975 aa21.37■■□□□ 1.01
SHKBP1-201ENST00000291842 FMR1NBQ8N0W7 255 aaPredicted RBP21.37■■□□□ 1.01
SHKBP1-201ENST00000291842 ZKSCAN3Q9BRR0 538 aa21.37■■□□□ 1.01
SHKBP1-201ENST00000291842 LY9Q9HBG7 655 aa21.37■■□□□ 1.01
SHKBP1-201ENST00000291842 SPTLC2O15270 562 aa21.36■■□□□ 1.01
SHKBP1-201ENST00000291842 IQCB1Q15051 598 aa21.36■■□□□ 1.01
SHKBP1-201ENST00000291842 STX1AQ16623 288 aa21.36■■□□□ 1.01
SHKBP1-201ENST00000291842 CCDC186Q7Z3E2 898 aa21.36■■□□□ 1.01
SHKBP1-201ENST00000291842 SDF4Q9BRK5 362 aa21.36■■□□□ 1.01
SHKBP1-201ENST00000291842 LRP2BPQ9P2M1 347 aa21.36■■□□□ 1.01
SHKBP1-201ENST00000291842 THRAP3Q9Y2W1 955 aaKnown RBP21.36■■□□□ 1.01
SHKBP1-201ENST00000291842 C4AP0C0L4 1744 aa21.36■■□□□ 1.01
SHKBP1-201ENST00000291842 C4BP0C0L5 1744 aa21.36■■□□□ 1.01
SHKBP1-201ENST00000291842 ZBTB43O43298 467 aa21.36■■□□□ 1.01
SHKBP1-201ENST00000291842 COL4A1P02462 1669 aa21.36■■□□□ 1.01
SHKBP1-201ENST00000291842 AHDC1Q5TGY3 1603 aaPredicted RBP21.36■■□□□ 1.01
SHKBP1-201ENST00000291842 PLA2G4DQ86XP0 818 aa21.36■■□□□ 1.01
SHKBP1-201ENST00000291842 SLC4A4Q9Y6R1 1079 aa21.36■■□□□ 1.01
SHKBP1-201ENST00000291842 IFIT3O14879 490 aaKnown RBP21.35■■□□□ 1.01
SHKBP1-201ENST00000291842 TDO2P48775 406 aa21.35■■□□□ 1.01
SHKBP1-201ENST00000291842 TERF1P54274 439 aa21.35■■□□□ 1.01
SHKBP1-201ENST00000291842 ALX1Q15699 326 aa21.35■■□□□ 1.01
SHKBP1-201ENST00000291842 C3orf67Q6ZVT6 689 aa21.35■■□□□ 1.01
SHKBP1-201ENST00000291842 BRAPQ7Z569 592 aa21.35■■□□□ 1.01
SHKBP1-201ENST00000291842 TMEM87BQ96K49 555 aa21.35■■□□□ 1.01
SHKBP1-201ENST00000291842 POLR3EQ9NVU0 708 aa21.35■■□□□ 1.01
SHKBP1-201ENST00000291842 GOLGA8AA7E2F4 631 aa21.34■■□□□ 1.01
SHKBP1-201ENST00000291842 GOLGA6L19H0YKK7 550 aa21.34■■□□□ 1.01
SHKBP1-201ENST00000291842 MARCKSP29966 332 aaPredicted RBP21.34■■□□□ 1.01
SHKBP1-201ENST00000291842 RBM10P98175 930 aaKnown RBP21.34■■□□□ 1.01
SHKBP1-201ENST00000291842 BICDL1Q6ZP65 573 aa21.34■■□□□ 1.01
SHKBP1-201ENST00000291842 SPATA31A5Q5VU36 1347 aa21.34■■□□□ 1.01
SHKBP1-201ENST00000291842 SPATA31A7Q8IWB4 1347 aa21.34■■□□□ 1.01
SHKBP1-201ENST00000291842 ARAP2Q8WZ64 1704 aa21.34■■□□□ 1.01
SHKBP1-201ENST00000291842 RANBP6O60518 1105 aaKnown RBP21.34■■□□□ 1.01
SHKBP1-201ENST00000291842 ANO1Q5XXA6 986 aa21.34■■□□□ 1.01
SHKBP1-201ENST00000291842 KRT40Q6A162 431 aa21.34■■□□□ 1.01
SHKBP1-201ENST00000291842 KIAA1524Q8TCG1 905 aa21.34■■□□□ 1.01
SHKBP1-201ENST00000291842 KCNG4Q8TDN1 519 aa21.34■■□□□ 1.01
SHKBP1-201ENST00000291842 FAM217BQ9NTX9 383 aaPredicted RBP21.34■■□□□ 1.01
SHKBP1-201ENST00000291842 ABCF2Q9UG63 623 aa21.34■■□□□ 1.01
SHKBP1-201ENST00000291842 GYG1P46976 350 aa21.33■■□□□ 1.01
SHKBP1-201ENST00000291842 LRMPQ12912 555 aa21.33■■□□□ 1.01
SHKBP1-201ENST00000291842 ERFEQ4G0M1 354 aa21.33■■□□□ 1.01
SHKBP1-201ENST00000291842 MFSD6Q6ZSS7 791 aa21.33■■□□□ 1.01
SHKBP1-201ENST00000291842 YEATS4O95619 227 aa21.33■■□□□ 1
SHKBP1-201ENST00000291842 AKNAD1Q5T1N1 836 aa21.33■■□□□ 1
SHKBP1-201ENST00000291842 ADGRA1Q86SQ6 560 aa21.33■■□□□ 1
SHKBP1-201ENST00000291842 VPS37DQ86XT2 251 aa21.33■■□□□ 1
SHKBP1-201ENST00000291842 PHLPP1O60346 1717 aa21.33■■□□□ 1
SHKBP1-201ENST00000291842 A0A1W2PQ27 194 aa21.32■■□□□ 1
SHKBP1-201ENST00000291842 A0A1W2PQ64 194 aa21.32■■□□□ 1
SHKBP1-201ENST00000291842 A0A1W2PQD8 194 aa21.32■■□□□ 1
SHKBP1-201ENST00000291842 CDKL5O76039 1030 aa21.32■■□□□ 1
SHKBP1-201ENST00000291842 IARSP41252 1262 aaKnown RBP21.32■■□□□ 1
SHKBP1-201ENST00000291842 GNL2Q13823 731 aaKnown RBP21.32■■□□□ 1
SHKBP1-201ENST00000291842 NTRK3Q16288 839 aa21.32■■□□□ 1
SHKBP1-201ENST00000291842 SLC12A7Q9Y666 1083 aa21.32■■□□□ 1
SHKBP1-201ENST00000291842 BECN2A8MW95 431 aa21.32■■□□□ 1
SHKBP1-201ENST00000291842 TPM3P06753 285 aa21.32■■□□□ 1
SHKBP1-201ENST00000291842 CPLX2Q6PUV4 134 aaKnown RBP21.32■■□□□ 1
SHKBP1-201ENST00000291842 CCDC82Q8N4S0 544 aa21.32■■□□□ 1
SHKBP1-201ENST00000291842 SPTLC3Q9NUV7 552 aa21.32■■□□□ 1
SHKBP1-201ENST00000291842 CLIP2Q9UDT6 1046 aa21.32■■□□□ 1
SHKBP1-201ENST00000291842 CCDC69A6NI79 296 aa21.31■■□□□ 1
SHKBP1-201ENST00000291842 WDHD1O75717 1129 aaPredicted RBP21.31■■□□□ 1
SHKBP1-201ENST00000291842 CAVIN2O95810 425 aa21.31■■□□□ 1
SHKBP1-201ENST00000291842 DHX40Q8IX18 779 aaKnown RBP21.31■■□□□ 1
SHKBP1-201ENST00000291842 SLC26A6Q9BXS9 759 aa21.31■■□□□ 1
SHKBP1-201ENST00000291842 SMIM22K7EJ46 135 aa21.31■■□□□ 1
SHKBP1-201ENST00000291842 CYP7A1P22680 504 aa21.31■■□□□ 1
SHKBP1-201ENST00000291842 SGMS1Q86VZ5 419 aa21.31■■□□□ 1
SHKBP1-201ENST00000291842 LINC00116Q8NCU8 138 aa21.31■■□□□ 1
SHKBP1-201ENST00000291842 SDR42E1Q8WUS8 393 aa21.31■■□□□ 1
SHKBP1-201ENST00000291842 ANO10Q9NW15 660 aa21.31■■□□□ 1
SHKBP1-201ENST00000291842 HSP90AA2PQ14568 343 aaPredicted RBP21.3■■□□□ 1
SHKBP1-201ENST00000291842 CMTR1Q8N1G2 835 aaKnown RBP21.3■■□□□ 1
SHKBP1-201ENST00000291842 NACAP1Q9BZK3 213 aa21.3■■□□□ 1
SHKBP1-201ENST00000291842 DOCK2Q92608 1830 aa21.3■■□□□ 1
SHKBP1-201ENST00000291842 TAF1P21675 1872 aa21.3■■□□□ 1
SHKBP1-201ENST00000291842 BIN1O00499 593 aa21.3■■□□□ 1
SHKBP1-201ENST00000291842 PIP4K2BP78356 416 aa21.3■■□□□ 1
SHKBP1-201ENST00000291842 FAM98CQ17RN3 349 aaKnown RBP21.3■■□□□ 1
SHKBP1-201ENST00000291842 CCDC144BQ3MJ40 725 aa21.3■■□□□ 1
SHKBP1-201ENST00000291842 AXDND1Q5T1B0 1012 aaPredicted RBP21.3■■□□□ 1
SHKBP1-201ENST00000291842 RAI14Q9P0K7 980 aa21.3■■□□□ 1
SHKBP1-201ENST00000291842 ZNF652Q9Y2D9 606 aa21.3■■□□□ 1
SHKBP1-201ENST00000291842 NRAPQ86VF7 1730 aa21.3■■□□□ 1
SHKBP1-201ENST00000291842 MROH7-TTC4A0A0A0MT08 1334 aa21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms