RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 ADGRA1Q86SQ6 560 aa17.97■□□□□ 0.47
SF3B4-201ENST00000271628 NSUN4Q96CB9 384 aaKnown RBP17.97■□□□□ 0.47
SF3B4-201ENST00000271628 RIOK1Q9BRS2 568 aaKnown RBP17.97■□□□□ 0.47
SF3B4-201ENST00000271628 RNF41Q9H4P4 317 aaPredicted RBP17.97■□□□□ 0.47
SF3B4-201ENST00000271628 KLF18A0A0U1RQI7 1052 aa17.97■□□□□ 0.47
SF3B4-201ENST00000271628 CDC37L1Q7L3B6 337 aa17.97■□□□□ 0.47
SF3B4-201ENST00000271628 TXNRD3Q86VQ6 643 aa17.97■□□□□ 0.47
SF3B4-201ENST00000271628 WDR66Q8TBY9 1149 aa17.97■□□□□ 0.47
SF3B4-201ENST00000271628 STAG1Q8WVM7 1258 aa17.97■□□□□ 0.47
SF3B4-201ENST00000271628 SALL1Q9NSC2 1324 aa17.96■□□□□ 0.47
SF3B4-201ENST00000271628 H3BQV1 296 aa17.96■□□□□ 0.47
SF3B4-201ENST00000271628 DTNBO60941 627 aa17.96■□□□□ 0.47
SF3B4-201ENST00000271628 ZNF827Q17R98 1081 aa17.96■□□□□ 0.47
SF3B4-201ENST00000271628 IFFO2Q5TF58 517 aa17.96■□□□□ 0.47
SF3B4-201ENST00000271628 GIMAP6Q6P9H5 292 aa17.96■□□□□ 0.47
SF3B4-201ENST00000271628 MTA3Q9BTC8 594 aa17.96■□□□□ 0.47
SF3B4-201ENST00000271628 ZSCAN16Q9H4T2 348 aaPredicted RBP17.96■□□□□ 0.47
SF3B4-201ENST00000271628 CNPY2Q9Y2B0 182 aa17.96■□□□□ 0.47
SF3B4-201ENST00000271628 CHD4Q14839 1912 aa17.96■□□□□ 0.47
SF3B4-201ENST00000271628 PTPDC1A2A3K4 754 aa17.95■□□□□ 0.46
SF3B4-201ENST00000271628 B4E1Z4 1266 aa17.95■□□□□ 0.46
SF3B4-201ENST00000271628 CTDNEP1O95476 244 aa17.95■□□□□ 0.46
SF3B4-201ENST00000271628 MECOMQ03112 1051 aa17.95■□□□□ 0.46
SF3B4-201ENST00000271628 CHAF1AQ13111 956 aaPredicted RBP17.95■□□□□ 0.46
SF3B4-201ENST00000271628 DDX11Q96FC9 970 aa17.95■□□□□ 0.46
SF3B4-201ENST00000271628 BRIP1Q9BX63 1249 aa17.95■□□□□ 0.46
SF3B4-201ENST00000271628 NSFL1CQ9UNZ2 370 aaKnown RBP17.95■□□□□ 0.46
SF3B4-201ENST00000271628 CCDC88AQ3V6T2 1871 aa17.95■□□□□ 0.46
SF3B4-201ENST00000271628 TIAM2Q8IVF5 1701 aa17.95■□□□□ 0.46
SF3B4-201ENST00000271628 KRT85P78386 507 aa17.95■□□□□ 0.46
SF3B4-201ENST00000271628 CTDSPL2Q05D32 466 aa17.95■□□□□ 0.46
SF3B4-201ENST00000271628 CYB5R4Q7L1T6 521 aa17.95■□□□□ 0.46
SF3B4-201ENST00000271628 COL23A1Q86Y22 540 aaPredicted RBP17.95■□□□□ 0.46
SF3B4-201ENST00000271628 TDRD7Q8NHU6 1098 aaKnown RBP17.95■□□□□ 0.46
SF3B4-201ENST00000271628 GDPD2Q9HCC8 539 aa17.95■□□□□ 0.46
SF3B4-201ENST00000271628 PODXL2Q9NZ53 605 aa17.95■□□□□ 0.46
SF3B4-201ENST00000271628 ANAPC4Q9UJX5 808 aa17.95■□□□□ 0.46
SF3B4-201ENST00000271628 NEDD4P46934 1319 aa17.95■□□□□ 0.46
SF3B4-201ENST00000271628 GOLGA8BA8MQT2 603 aa17.94■□□□□ 0.46
SF3B4-201ENST00000271628 SH2B2O14492 632 aaPredicted RBP17.94■□□□□ 0.46
SF3B4-201ENST00000271628 LIFRP42702 1097 aa17.94■□□□□ 0.46
SF3B4-201ENST00000271628 DNM1Q05193 864 aaKnown RBP17.94■□□□□ 0.46
SF3B4-201ENST00000271628 SYAP1Q96A49 352 aaPredicted RBP17.94■□□□□ 0.46
SF3B4-201ENST00000271628 NCOA5Q9HCD5 579 aaKnown RBP17.94■□□□□ 0.46
SF3B4-201ENST00000271628 GPHNQ9NQX3 736 aaPredicted RBP17.94■□□□□ 0.46
SF3B4-201ENST00000271628 GGA1Q9UJY5 639 aa17.94■□□□□ 0.46
SF3B4-201ENST00000271628 UBE2HP62256 183 aa17.94■□□□□ 0.46
SF3B4-201ENST00000271628 GPSM2P81274 684 aa17.94■□□□□ 0.46
SF3B4-201ENST00000271628 PPARAQ07869 468 aa17.94■□□□□ 0.46
SF3B4-201ENST00000271628 SART3Q15020 963 aaKnown RBP17.94■□□□□ 0.46
SF3B4-201ENST00000271628 IGDCC4Q8TDY8 1250 aa17.94■□□□□ 0.46
SF3B4-201ENST00000271628 ZNF384Q8TF68 577 aa17.94■□□□□ 0.46
SF3B4-201ENST00000271628 ZSWIM5Q9P217 1185 aa17.94■□□□□ 0.46
SF3B4-201ENST00000271628 SGMS1Q86VZ5 419 aa17.93■□□□□ 0.46
SF3B4-201ENST00000271628 SDR42E1Q8WUS8 393 aa17.93■□□□□ 0.46
SF3B4-201ENST00000271628 RGPD3A6NKT7 1758 aaPredicted RBP17.92■□□□□ 0.46
SF3B4-201ENST00000271628 MAST2Q6P0Q8 1798 aa17.92■□□□□ 0.46
SF3B4-201ENST00000271628 RGPD4Q7Z3J3 1758 aa17.92■□□□□ 0.46
SF3B4-201ENST00000271628 CPLX1O14810 134 aa17.92■□□□□ 0.46
SF3B4-201ENST00000271628 PCP11498 1178 aaKnown RBP17.92■□□□□ 0.46
SF3B4-201ENST00000271628 PRDX5P30044 214 aa17.92■□□□□ 0.46
SF3B4-201ENST00000271628 HPS5Q9UPZ3 1129 aa17.92■□□□□ 0.46
SF3B4-201ENST00000271628 FIBPO43427 364 aa17.92■□□□□ 0.46
SF3B4-201ENST00000271628 KDM4AO75164 1064 aa17.92■□□□□ 0.46
SF3B4-201ENST00000271628 UFL1O94874 794 aa17.92■□□□□ 0.46
SF3B4-201ENST00000271628 FERMT3Q86UX7 667 aa17.92■□□□□ 0.46
SF3B4-201ENST00000271628 DZIP1Q86YF9 867 aaKnown RBP17.92■□□□□ 0.46
SF3B4-201ENST00000271628 TMTC2Q8N394 836 aa17.92■□□□□ 0.46
SF3B4-201ENST00000271628 CRNKL1Q9BZJ0 848 aaKnown RBP17.92■□□□□ 0.46
SF3B4-201ENST00000271628 SCAND2PQ9GZW5 306 aaPredicted RBP17.92■□□□□ 0.46
SF3B4-201ENST00000271628 ATP8A2Q9NTI2 1148 aa17.92■□□□□ 0.46
SF3B4-201ENST00000271628 NRXN2Q9P2S2 1712 aa17.92■□□□□ 0.46
SF3B4-201ENST00000271628 ERICH2A1L162 156 aa17.91■□□□□ 0.46
SF3B4-201ENST00000271628 LDHBP07195 334 aaKnown RBP17.91■□□□□ 0.46
SF3B4-201ENST00000271628 DYNLL1P63167 89 aaKnown RBP17.91■□□□□ 0.46
SF3B4-201ENST00000271628 HS1BP3Q53T59 392 aa17.91■□□□□ 0.46
SF3B4-201ENST00000271628 TMEM67Q5HYA8 995 aa17.91■□□□□ 0.46
SF3B4-201ENST00000271628 CPLX2Q6PUV4 134 aaKnown RBP17.91■□□□□ 0.46
SF3B4-201ENST00000271628 SP8Q8IXZ3 490 aa17.91■□□□□ 0.46
SF3B4-201ENST00000271628 RGS22Q8NE09 1264 aa17.91■□□□□ 0.46
SF3B4-201ENST00000271628 PARP3Q9Y6F1 533 aa17.91■□□□□ 0.46
SF3B4-201ENST00000271628 MINDY4BA8MYZ0 360 aa17.91■□□□□ 0.46
SF3B4-201ENST00000271628 IFIT3O14879 490 aaKnown RBP17.91■□□□□ 0.46
SF3B4-201ENST00000271628 CDKL5O76039 1030 aa17.91■□□□□ 0.46
SF3B4-201ENST00000271628 PDE6BP35913 854 aa17.91■□□□□ 0.46
SF3B4-201ENST00000271628 METAP2P50579 478 aaKnown RBP eCLIP17.91■□□□□ 0.46
SF3B4-201ENST00000271628 GSTO1P78417 241 aa17.91■□□□□ 0.46
SF3B4-201ENST00000271628 LRSAM1Q6UWE0 723 aa17.91■□□□□ 0.46
SF3B4-201ENST00000271628 NFXL1Q6ZNB6 911 aa17.91■□□□□ 0.46
SF3B4-201ENST00000271628 LY9Q9HBG7 655 aa17.91■□□□□ 0.46
SF3B4-201ENST00000271628 TOMM22Q9NS69 142 aa17.91■□□□□ 0.46
SF3B4-201ENST00000271628 ELP1O95163 1332 aa17.9■□□□□ 0.46
SF3B4-201ENST00000271628 KIAA1551Q9HCM1 1747 aa17.9■□□□□ 0.46
SF3B4-201ENST00000271628 GADD45BO75293 160 aaPredicted RBP17.9■□□□□ 0.46
SF3B4-201ENST00000271628 IL1R1P14778 569 aa17.9■□□□□ 0.46
SF3B4-201ENST00000271628 ALDH1B1P30837 517 aa17.9■□□□□ 0.46
SF3B4-201ENST00000271628 APOA5Q6Q788 366 aa17.9■□□□□ 0.46
SF3B4-201ENST00000271628 SYNE3Q6ZMZ3 975 aa17.9■□□□□ 0.46
SF3B4-201ENST00000271628 ESR2Q92731 530 aa17.9■□□□□ 0.46
SF3B4-201ENST00000271628 CD209Q9NNX6 404 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms