RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 SLF2Q8IX21 1173 aa16.73■□□□□ 0.27
SS18-201ENST00000269137 FBXL16Q8N461 479 aa16.73■□□□□ 0.27
SS18-201ENST00000269137 CRNKL1Q9BZJ0 848 aaKnown RBP16.73■□□□□ 0.27
SS18-201ENST00000269137 PIM2Q9P1W9 311 aa16.73■□□□□ 0.27
SS18-201ENST00000269137 MYH2Q9UKX2 1941 aa16.72■□□□□ 0.27
SS18-201ENST00000269137 TOB2Q14106 344 aaPredicted RBP16.72■□□□□ 0.27
SS18-201ENST00000269137 SOGA3Q5TF21 947 aa16.72■□□□□ 0.27
SS18-201ENST00000269137 NCOA7Q8NI08 942 aa16.72■□□□□ 0.27
SS18-201ENST00000269137 PSMD1Q99460 953 aa16.72■□□□□ 0.27
SS18-201ENST00000269137 AGXT2Q9BYV1 514 aa16.72■□□□□ 0.27
SS18-201ENST00000269137 AATFQ9NY61 560 aaKnown RBP eCLIP16.72■□□□□ 0.27
SS18-201ENST00000269137 CD2APQ9Y5K6 639 aa16.72■□□□□ 0.27
SS18-201ENST00000269137 MROH7-TTC4A0A0A0MT08 1334 aa16.71■□□□□ 0.27
SS18-201ENST00000269137 WDR19Q8NEZ3 1342 aa16.71■□□□□ 0.27
SS18-201ENST00000269137 BAG3O95817 575 aa16.71■□□□□ 0.27
SS18-201ENST00000269137 TBC1D10CQ8IV04 446 aa16.71■□□□□ 0.27
SS18-201ENST00000269137 MB21D2Q8IYB1 491 aaPredicted RBP16.71■□□□□ 0.27
SS18-201ENST00000269137 SDR42E1Q8WUS8 393 aa16.71■□□□□ 0.27
SS18-201ENST00000269137 ATP8A2Q9NTI2 1148 aa16.71■□□□□ 0.27
SS18-201ENST00000269137 FOXD4L1Q9NU39 408 aa16.71■□□□□ 0.27
SS18-201ENST00000269137 ANAPC4Q9UJX5 808 aa16.71■□□□□ 0.27
SS18-201ENST00000269137 PTGER2P43116 358 aa16.7■□□□□ 0.26
SS18-201ENST00000269137 FKBP1AP62942 108 aaKnown RBP16.7■□□□□ 0.26
SS18-201ENST00000269137 TRDNQ13061 729 aa16.7■□□□□ 0.26
SS18-201ENST00000269137 DIXDC1Q155Q3 683 aa16.7■□□□□ 0.26
SS18-201ENST00000269137 TCEANC2Q96MN5 208 aa16.7■□□□□ 0.26
SS18-201ENST00000269137 GAKO14976 1311 aa16.7■□□□□ 0.26
SS18-201ENST00000269137 GPR75-ASB3A0A0A6YYF3 556 aa16.7■□□□□ 0.26
SS18-201ENST00000269137 PSDA5PKW4 1024 aaPredicted RBP16.7■□□□□ 0.26
SS18-201ENST00000269137 MCM5P33992 734 aa16.7■□□□□ 0.26
SS18-201ENST00000269137 STRIP1Q5VSL9 837 aa16.7■□□□□ 0.26
SS18-201ENST00000269137 Q6ZUG5 572 aa16.7■□□□□ 0.26
SS18-201ENST00000269137 RALYLQ86SE5 291 aaKnown RBP16.7■□□□□ 0.26
SS18-201ENST00000269137 NOL10Q9BSC4 688 aaKnown RBP16.7■□□□□ 0.26
SS18-201ENST00000269137 VPS33BQ9H267 617 aa16.7■□□□□ 0.26
SS18-201ENST00000269137 DBNDD1Q9H9R9 158 aa16.7■□□□□ 0.26
SS18-201ENST00000269137 TPCN1Q9ULQ1 816 aa16.7■□□□□ 0.26
SS18-201ENST00000269137 TIAM2Q8IVF5 1701 aa16.69■□□□□ 0.26
SS18-201ENST00000269137 ECE2O60344 883 aa16.69■□□□□ 0.26
SS18-201ENST00000269137 CERS5Q8N5B7 392 aa16.69■□□□□ 0.26
SS18-201ENST00000269137 LARP6Q9BRS8 491 aaKnown RBP16.69■□□□□ 0.26
SS18-201ENST00000269137 BRCA1P38398 1863 aaKnown RBP16.68■□□□□ 0.26
SS18-201ENST00000269137 PLCG2P16885 1265 aa16.68■□□□□ 0.26
SS18-201ENST00000269137 ME3Q16798 604 aa16.68■□□□□ 0.26
SS18-201ENST00000269137 AOC3Q16853 763 aa16.68■□□□□ 0.26
SS18-201ENST00000269137 DALRD3Q5D0E6 543 aaKnown RBP16.68■□□□□ 0.26
SS18-201ENST00000269137 AKNAD1Q5T1N1 836 aa16.68■□□□□ 0.26
SS18-201ENST00000269137 STAG1Q8WVM7 1258 aa16.68■□□□□ 0.26
SS18-201ENST00000269137 CNNM2Q9H8M5 875 aa16.68■□□□□ 0.26
SS18-201ENST00000269137 DCP1AQ9NPI6 582 aaPredicted RBP16.68■□□□□ 0.26
SS18-201ENST00000269137 LARGE1O95461 756 aa16.68■□□□□ 0.26
SS18-201ENST00000269137 PPARAQ07869 468 aa16.68■□□□□ 0.26
SS18-201ENST00000269137 RNF41Q9H4P4 317 aaPredicted RBP16.68■□□□□ 0.26
SS18-201ENST00000269137 MKRN1Q9UHC7 482 aaKnown RBP16.68■□□□□ 0.26
SS18-201ENST00000269137 SCN9AQ15858 1988 aa16.67■□□□□ 0.26
SS18-201ENST00000269137 BAZ2AQ9UIF9 1905 aaKnown RBP16.67■□□□□ 0.26
SS18-201ENST00000269137 PPIP5K2O43314 1243 aa16.67■□□□□ 0.26
SS18-201ENST00000269137 FGD1P98174 961 aa16.67■□□□□ 0.26
SS18-201ENST00000269137 CTDSPL2Q05D32 466 aa16.67■□□□□ 0.26
SS18-201ENST00000269137 SBK1Q52WX2 424 aa16.67■□□□□ 0.26
SS18-201ENST00000269137 MFSD6Q6ZSS7 791 aa16.67■□□□□ 0.26
SS18-201ENST00000269137 FBXW7Q969H0 707 aa16.67■□□□□ 0.26
SS18-201ENST00000269137 MRIQ9BWK5 157 aa16.67■□□□□ 0.26
SS18-201ENST00000269137 KRT23Q9C075 422 aa16.67■□□□□ 0.26
SS18-201ENST00000269137 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.67■□□□□ 0.26
SS18-201ENST00000269137 USP17L3A6NCW0 530 aa16.66■□□□□ 0.26
SS18-201ENST00000269137 USP17L4A6NCW7 530 aa16.66■□□□□ 0.26
SS18-201ENST00000269137 PRC1O43663 620 aa16.66■□□□□ 0.26
SS18-201ENST00000269137 PCP11498 1178 aaKnown RBP16.66■□□□□ 0.26
SS18-201ENST00000269137 BTDP43251 543 aa16.66■□□□□ 0.26
SS18-201ENST00000269137 EVCP57679 992 aa16.66■□□□□ 0.26
SS18-201ENST00000269137 ANTXR2P58335 489 aa16.66■□□□□ 0.26
SS18-201ENST00000269137 DACT2Q5SW24 774 aa16.66■□□□□ 0.26
SS18-201ENST00000269137 CTR9Q6PD62 1173 aa16.66■□□□□ 0.26
SS18-201ENST00000269137 USP17L1Q7RTZ2 530 aa16.66■□□□□ 0.26
SS18-201ENST00000269137 SH3RF3Q8TEJ3 882 aaPredicted RBP16.66■□□□□ 0.26
SS18-201ENST00000269137 BRF1Q92994 677 aa16.66■□□□□ 0.26
SS18-201ENST00000269137 LRRC2Q9BYS8 371 aa16.66■□□□□ 0.26
SS18-201ENST00000269137 KCNQ5Q9NR82 932 aa16.66■□□□□ 0.26
SS18-201ENST00000269137 FGRP09769 529 aa16.66■□□□□ 0.26
SS18-201ENST00000269137 ARPP21Q9UBL0 812 aaPredicted RBP16.66■□□□□ 0.26
SS18-201ENST00000269137 TTF2Q9UNY4 1162 aaKnown RBP16.66■□□□□ 0.26
SS18-201ENST00000269137 DAGLAQ9Y4D2 1042 aa16.66■□□□□ 0.26
SS18-201ENST00000269137 TACC3Q9Y6A5 838 aa16.66■□□□□ 0.26
SS18-201ENST00000269137 ZNF646O15015 1829 aaPredicted RBP16.65■□□□□ 0.26
SS18-201ENST00000269137 NEDD4P46934 1319 aa16.65■□□□□ 0.26
SS18-201ENST00000269137 MINDY4BA8MYZ0 360 aa16.65■□□□□ 0.26
SS18-201ENST00000269137 USP17L12C9JPN9 530 aa16.65■□□□□ 0.26
SS18-201ENST00000269137 USP17L21D6R901 530 aa16.65■□□□□ 0.26
SS18-201ENST00000269137 NUCB2P80303 420 aa16.65■□□□□ 0.26
SS18-201ENST00000269137 HHIPL2Q6UWX4 724 aa16.65■□□□□ 0.26
SS18-201ENST00000269137 B4E1Z4 1266 aa16.64■□□□□ 0.25
SS18-201ENST00000269137 RHBDL3P58872 404 aa16.64■□□□□ 0.25
SS18-201ENST00000269137 HDLBPQ00341 1268 aaKnown RBP16.64■□□□□ 0.25
SS18-201ENST00000269137 ST3GAL1Q11201 340 aa16.64■□□□□ 0.25
SS18-201ENST00000269137 RAB3GAP1Q15042 981 aa16.64■□□□□ 0.25
SS18-201ENST00000269137 CHST3Q7LGC8 479 aa16.64■□□□□ 0.25
SS18-201ENST00000269137 CCDC83Q8IWF9 413 aa16.64■□□□□ 0.25
SS18-201ENST00000269137 ZNF274Q96GC6 653 aaPredicted RBP16.64■□□□□ 0.25
SS18-201ENST00000269137 TMEM87BQ96K49 555 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms