RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 CARMIL3Q8ND23 1372 aa18.8■□□□□ 0.6
CTCF-201ENST00000264010 SMTNL1A8MU46 457 aa18.8■□□□□ 0.6
CTCF-201ENST00000264010 SEC31BQ9NQW1 1179 aa18.8■□□□□ 0.6
CTCF-201ENST00000264010 WWC3Q9ULE0 1092 aa18.8■□□□□ 0.6
CTCF-201ENST00000264010 TPD52L1Q16890 204 aaPredicted RBP18.8■□□□□ 0.6
CTCF-201ENST00000264010 IFNL3Q8IZI9 196 aa18.8■□□□□ 0.6
CTCF-201ENST00000264010 C8orf37Q96NL8 207 aa18.8■□□□□ 0.6
CTCF-201ENST00000264010 SCN11AQ9UI33 1791 aa18.8■□□□□ 0.6
CTCF-201ENST00000264010 GPS2Q13227 327 aa18.79■□□□□ 0.6
CTCF-201ENST00000264010 TAF3Q5VWG9 929 aa18.79■□□□□ 0.6
CTCF-201ENST00000264010 GPHNQ9NQX3 736 aaPredicted RBP18.79■□□□□ 0.6
CTCF-201ENST00000264010 BCAMP50895 628 aa18.79■□□□□ 0.6
CTCF-201ENST00000264010 NOLC1Q14978 699 aaKnown RBP eCLIP18.79■□□□□ 0.6
CTCF-201ENST00000264010 FBXO18Q8NFZ0 1043 aa18.79■□□□□ 0.6
CTCF-201ENST00000264010 CCDC94Q9BW85 323 aaPredicted RBP18.79■□□□□ 0.6
CTCF-201ENST00000264010 CEP131Q9UPN4 1083 aa18.79■□□□□ 0.6
CTCF-201ENST00000264010 AKNAD1Q5T1N1 836 aa18.79■□□□□ 0.6
CTCF-201ENST00000264010 CATIPQ7Z7H3 387 aa18.79■□□□□ 0.6
CTCF-201ENST00000264010 HOMER1Q86YM7 354 aa18.79■□□□□ 0.6
CTCF-201ENST00000264010 YEATS4O95619 227 aa18.78■□□□□ 0.6
CTCF-201ENST00000264010 CTDSPL2Q05D32 466 aa18.78■□□□□ 0.6
CTCF-201ENST00000264010 ANO1Q5XXA6 986 aa18.78■□□□□ 0.6
CTCF-201ENST00000264010 ZNF34Q8IZ26 560 aa18.78■□□□□ 0.6
CTCF-201ENST00000264010 ZMYM6O95789 1325 aa18.78■□□□□ 0.6
CTCF-201ENST00000264010 FAM98CQ17RN3 349 aaKnown RBP18.78■□□□□ 0.6
CTCF-201ENST00000264010 FILIP1Q7Z7B0 1213 aa18.78■□□□□ 0.6
CTCF-201ENST00000264010 A0A1B0GVL5 298 aa18.78■□□□□ 0.6
CTCF-201ENST00000264010 CHRNDQ07001 517 aa18.78■□□□□ 0.6
CTCF-201ENST00000264010 ZNF512BQ96KM6 892 aaPredicted RBP18.78■□□□□ 0.6
CTCF-201ENST00000264010 DENND2AQ9ULE3 1009 aa18.78■□□□□ 0.6
CTCF-201ENST00000264010 MARCKSP29966 332 aaPredicted RBP18.77■□□□□ 0.6
CTCF-201ENST00000264010 EIF5P55010 431 aaKnown RBP18.77■□□□□ 0.6
CTCF-201ENST00000264010 MYSM1Q5VVJ2 828 aa18.77■□□□□ 0.6
CTCF-201ENST00000264010 RASSF8Q8NHQ8 419 aa18.77■□□□□ 0.6
CTCF-201ENST00000264010 SYKP43405 635 aa18.77■□□□□ 0.6
CTCF-201ENST00000264010 MB21D2Q8IYB1 491 aaPredicted RBP18.77■□□□□ 0.6
CTCF-201ENST00000264010 ADD1P35611 737 aaKnown RBP18.77■□□□□ 0.59
CTCF-201ENST00000264010 TPTE2Q6XPS3 522 aa18.77■□□□□ 0.59
CTCF-201ENST00000264010 CCDC186Q7Z3E2 898 aa18.77■□□□□ 0.59
CTCF-201ENST00000264010 TMX4Q9H1E5 349 aaPredicted RBP18.77■□□□□ 0.59
CTCF-201ENST00000264010 MRVI1Q9Y6F6 885 aa18.77■□□□□ 0.59
CTCF-201ENST00000264010 WDR19Q8NEZ3 1342 aa18.76■□□□□ 0.59
CTCF-201ENST00000264010 POLR3GO15318 223 aaPredicted RBP18.76■□□□□ 0.59
CTCF-201ENST00000264010 DHX8Q14562 1220 aaKnown RBP18.76■□□□□ 0.59
CTCF-201ENST00000264010 DZIP1Q86YF9 867 aaKnown RBP18.76■□□□□ 0.59
CTCF-201ENST00000264010 ADALQ6DHV7 355 aa18.76■□□□□ 0.59
CTCF-201ENST00000264010 STRBPQ96SI9 672 aaKnown RBP18.76■□□□□ 0.59
CTCF-201ENST00000264010 RTEL1Q9NZ71 1219 aa18.76■□□□□ 0.59
CTCF-201ENST00000264010 BIN1O00499 593 aa18.76■□□□□ 0.59
CTCF-201ENST00000264010 RASGRF1Q13972 1273 aa18.76■□□□□ 0.59
CTCF-201ENST00000264010 KRT40Q6A162 431 aa18.76■□□□□ 0.59
CTCF-201ENST00000264010 CRNKL1Q9BZJ0 848 aaKnown RBP18.76■□□□□ 0.59
CTCF-201ENST00000264010 PHKBQ93100 1093 aa18.75■□□□□ 0.59
CTCF-201ENST00000264010 PGBD1Q96JS3 809 aa18.75■□□□□ 0.59
CTCF-201ENST00000264010 ARID4AP29374 1257 aaPredicted RBP18.75■□□□□ 0.59
CTCF-201ENST00000264010 CTCFLQ8NI51 663 aaPredicted RBP18.75■□□□□ 0.59
CTCF-201ENST00000264010 TIGD1Q96MW7 591 aa18.75■□□□□ 0.59
CTCF-201ENST00000264010 ZKSCAN3Q9BRR0 538 aa18.75■□□□□ 0.59
CTCF-201ENST00000264010 ANKIB1Q9P2G1 1089 aa18.75■□□□□ 0.59
CTCF-201ENST00000264010 ZBTB22O15209 634 aa18.75■□□□□ 0.59
CTCF-201ENST00000264010 CCDC112Q8NEF3 446 aa18.75■□□□□ 0.59
CTCF-201ENST00000264010 MYL10Q9BUA6 226 aa18.75■□□□□ 0.59
CTCF-201ENST00000264010 ANKRD2Q9GZV1 360 aa18.75■□□□□ 0.59
CTCF-201ENST00000264010 PARP4Q9UKK3 1724 aaKnown RBP18.74■□□□□ 0.59
CTCF-201ENST00000264010 N4BP2Q86UW6 1770 aaPredicted RBP18.74■□□□□ 0.59
CTCF-201ENST00000264010 BCL9O00512 1426 aa18.74■□□□□ 0.59
CTCF-201ENST00000264010 SPTY2D1Q68D10 685 aaPredicted RBP18.74■□□□□ 0.59
CTCF-201ENST00000264010 RTCBQ9Y3I0 505 aaKnown RBP18.74■□□□□ 0.59
CTCF-201ENST00000264010 A0A0G2JLW4 131 aa18.74■□□□□ 0.59
CTCF-201ENST00000264010 NEMFO60524 1076 aa18.74■□□□□ 0.59
CTCF-201ENST00000264010 APOA5Q6Q788 366 aa18.74■□□□□ 0.59
CTCF-201ENST00000264010 CNNM3Q8NE01 707 aa18.74■□□□□ 0.59
CTCF-201ENST00000264010 FTOQ9C0B1 505 aaKnown RBP eCLIP18.74■□□□□ 0.59
CTCF-201ENST00000264010 JCADQ9P266 1359 aa18.74■□□□□ 0.59
CTCF-201ENST00000264010 KDM4FA0A1W2PPD8 638 aa18.74■□□□□ 0.59
CTCF-201ENST00000264010 PCDHA7Q9UN72 937 aa18.74■□□□□ 0.59
CTCF-201ENST00000264010 RTL9Q8NET4 1388 aa18.74■□□□□ 0.59
CTCF-201ENST00000264010 UBAP1LF5GYI3 381 aa18.73■□□□□ 0.59
CTCF-201ENST00000264010 SH2B2O14492 632 aaPredicted RBP18.73■□□□□ 0.59
CTCF-201ENST00000264010 PIBF1Q8WXW3 757 aa18.73■□□□□ 0.59
CTCF-201ENST00000264010 DACH1Q9UI36 760 aa18.73■□□□□ 0.59
CTCF-201ENST00000264010 TNS2Q63HR2 1409 aa18.73■□□□□ 0.59
CTCF-201ENST00000264010 SERPINC1P01008 464 aa18.73■□□□□ 0.59
CTCF-201ENST00000264010 RFC4P35249 363 aa18.73■□□□□ 0.59
CTCF-201ENST00000264010 IFIT1BQ5T764 474 aaKnown RBP18.73■□□□□ 0.59
CTCF-201ENST00000264010 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.73■□□□□ 0.59
CTCF-201ENST00000264010 AOPEPQ8N6M6 819 aa18.73■□□□□ 0.59
CTCF-201ENST00000264010 G3V3G9 751 aa18.73■□□□□ 0.59
CTCF-201ENST00000264010 GNPATO15228 680 aa18.73■□□□□ 0.59
CTCF-201ENST00000264010 UBE4AQ14139 1066 aa18.73■□□□□ 0.59
CTCF-201ENST00000264010 DCAF8Q5TAQ9 597 aa18.73■□□□□ 0.59
CTCF-201ENST00000264010 AFDNP55196 1824 aaKnown RBP18.73■□□□□ 0.59
CTCF-201ENST00000264010 PTGS1P23219 599 aa18.72■□□□□ 0.59
CTCF-201ENST00000264010 USP5P45974 858 aa18.72■□□□□ 0.59
CTCF-201ENST00000264010 A0A1W2PQ27 194 aa18.72■□□□□ 0.59
CTCF-201ENST00000264010 A0A1W2PQ64 194 aa18.72■□□□□ 0.59
CTCF-201ENST00000264010 A0A1W2PQD8 194 aa18.72■□□□□ 0.59
CTCF-201ENST00000264010 SNAP23O00161 211 aa18.72■□□□□ 0.59
CTCF-201ENST00000264010 CBFA2T2O43439 604 aa18.72■□□□□ 0.59
CTCF-201ENST00000264010 GYG1P46976 350 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms