RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 EYA2O00167 538 aa9.82□□□□□ -0.84
PTCD3-201ENST00000254630 TYRO3Q06418 890 aa9.82□□□□□ -0.84
PTCD3-201ENST00000254630 DPP8Q6V1X1 898 aaPredicted RBP9.82□□□□□ -0.84
PTCD3-201ENST00000254630 PAIP2Q9BPZ3 127 aaKnown RBP9.82□□□□□ -0.84
PTCD3-201ENST00000254630 NSRP1Q9H0G5 558 aaKnown RBP9.82□□□□□ -0.84
PTCD3-201ENST00000254630 ZBTB40Q9NUA8 1239 aa9.82□□□□□ -0.84
PTCD3-201ENST00000254630 G2E3Q7L622 706 aa9.82□□□□□ -0.84
PTCD3-201ENST00000254630 HS2ST1Q7LGA3 356 aa9.82□□□□□ -0.84
PTCD3-201ENST00000254630 STMN4Q9H169 189 aaPredicted RBP9.82□□□□□ -0.84
PTCD3-201ENST00000254630 VWA3AA6NCI4 1184 aa9.82□□□□□ -0.84
PTCD3-201ENST00000254630 LETM2Q2VYF4 491 aa9.82□□□□□ -0.84
PTCD3-201ENST00000254630 CERS3Q8IU89 383 aa9.82□□□□□ -0.84
PTCD3-201ENST00000254630 ZNF594Q96JF6 807 aaPredicted RBP9.82□□□□□ -0.84
PTCD3-201ENST00000254630 PRDM10Q9NQV6 1147 aa9.82□□□□□ -0.84
PTCD3-201ENST00000254630 AATFQ9NY61 560 aaKnown RBP eCLIP9.82□□□□□ -0.842e-17■■□□□ 12.3
PTCD3-201ENST00000254630 DEXIO95424 95 aa9.82□□□□□ -0.84
PTCD3-201ENST00000254630 SKILP12757 684 aa9.82□□□□□ -0.84
PTCD3-201ENST00000254630 STX17P56962 302 aa9.82□□□□□ -0.84
PTCD3-201ENST00000254630 CTDSPL2Q05D32 466 aa9.82□□□□□ -0.84
PTCD3-201ENST00000254630 TMEM87BQ96K49 555 aa9.82□□□□□ -0.84
PTCD3-201ENST00000254630 MAK16Q9BXY0 300 aaKnown RBP9.82□□□□□ -0.84
PTCD3-201ENST00000254630 IQCGQ9H095 443 aaKnown RBP9.82□□□□□ -0.84
PTCD3-201ENST00000254630 BIN2Q9UBW5 565 aaPredicted RBP9.82□□□□□ -0.84
PTCD3-201ENST00000254630 RLBP1P12271 317 aa9.81□□□□□ -0.84
PTCD3-201ENST00000254630 TAF12Q16514 161 aa9.81□□□□□ -0.84
PTCD3-201ENST00000254630 USP26Q9BXU7 913 aa9.81□□□□□ -0.84
PTCD3-201ENST00000254630 USP21Q9UK80 565 aa9.81□□□□□ -0.84
PTCD3-201ENST00000254630 WDR44Q5JSH3 913 aa9.81□□□□□ -0.84
PTCD3-201ENST00000254630 C6orf163Q5TEZ5 329 aa9.81□□□□□ -0.84
PTCD3-201ENST00000254630 CFAP65Q6ZU64 1925 aaKnown RBP9.81□□□□□ -0.84
PTCD3-201ENST00000254630 USP19O94966 1318 aa9.81□□□□□ -0.84
PTCD3-201ENST00000254630 PIK3AP1Q6ZUJ8 805 aa9.81□□□□□ -0.84
PTCD3-201ENST00000254630 PLCD1P51178 756 aa9.81□□□□□ -0.84
PTCD3-201ENST00000254630 WDR66Q8TBY9 1149 aa9.81□□□□□ -0.84
PTCD3-201ENST00000254630 HOOK2Q96ED9 719 aa9.81□□□□□ -0.84
PTCD3-201ENST00000254630 CAPZA3Q96KX2 299 aa9.81□□□□□ -0.84
PTCD3-201ENST00000254630 SH3TC1Q8TE82 1336 aa9.8□□□□□ -0.84
PTCD3-201ENST00000254630 KDM5DQ9BY66 1539 aa9.8□□□□□ -0.84
PTCD3-201ENST00000254630 STRN3Q13033 797 aa9.8□□□□□ -0.84
PTCD3-201ENST00000254630 ATL3Q6DD88 541 aa9.8□□□□□ -0.84
PTCD3-201ENST00000254630 SPATA5Q8NB90 893 aa9.8□□□□□ -0.84
PTCD3-201ENST00000254630 KIFAP3Q92845 792 aa9.8□□□□□ -0.84
PTCD3-201ENST00000254630 TESK2Q96S53 571 aa9.8□□□□□ -0.84
PTCD3-201ENST00000254630 RPL13P26373 211 aaKnown RBP9.8□□□□□ -0.84
PTCD3-201ENST00000254630 RAPGEF1Q13905 1077 aa9.8□□□□□ -0.84
PTCD3-201ENST00000254630 SUCLG2Q96I99 432 aa9.8□□□□□ -0.84
PTCD3-201ENST00000254630 KDM5CP41229 1560 aa9.8□□□□□ -0.84
PTCD3-201ENST00000254630 KRT86O43790 486 aa9.8□□□□□ -0.84
PTCD3-201ENST00000254630 ZBED4O75132 1171 aa9.8□□□□□ -0.84
PTCD3-201ENST00000254630 TAF5LO75529 589 aa9.8□□□□□ -0.84
PTCD3-201ENST00000254630 BMS1Q14692 1282 aaKnown RBP9.8□□□□□ -0.84
PTCD3-201ENST00000254630 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.8□□□□□ -0.84
PTCD3-201ENST00000254630 GOLGA1Q92805 767 aa9.8□□□□□ -0.84
PTCD3-201ENST00000254630 DDX17Q92841 729 aaKnown RBP9.8□□□□□ -0.84
PTCD3-201ENST00000254630 PRIMPOLQ96LW4 560 aa9.8□□□□□ -0.84
PTCD3-201ENST00000254630 ZNF408Q9H9D4 720 aa9.8□□□□□ -0.84
PTCD3-201ENST00000254630 HOXB7P09629 217 aa9.8□□□□□ -0.84
PTCD3-201ENST00000254630 ARL1P40616 181 aaPredicted RBP9.8□□□□□ -0.84
PTCD3-201ENST00000254630 CCDC63Q8NA47 563 aa9.8□□□□□ -0.84
PTCD3-201ENST00000254630 IQUBQ8NA54 791 aa9.8□□□□□ -0.84
PTCD3-201ENST00000254630 CCDC114Q96M63 670 aa9.8□□□□□ -0.84
PTCD3-201ENST00000254630 RNF216Q9NWF9 866 aaPredicted RBP9.8□□□□□ -0.84
PTCD3-201ENST00000254630 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.8□□□□□ -0.84
PTCD3-201ENST00000254630 DNAI1Q9UI46 699 aa9.8□□□□□ -0.84
PTCD3-201ENST00000254630 KIF5AQ12840 1032 aa9.8□□□□□ -0.84
PTCD3-201ENST00000254630 SEL1L2Q5TEA6 688 aa9.8□□□□□ -0.84
PTCD3-201ENST00000254630 NCAPH2Q6IBW4 605 aa9.8□□□□□ -0.84
PTCD3-201ENST00000254630 LGR6Q9HBX8 967 aa9.8□□□□□ -0.84
PTCD3-201ENST00000254630 MYCLP12524 364 aaPredicted RBP9.79□□□□□ -0.84
PTCD3-201ENST00000254630 ADCY7P51828 1080 aa9.79□□□□□ -0.84
PTCD3-201ENST00000254630 CNNM4Q6P4Q7 775 aa9.79□□□□□ -0.84
PTCD3-201ENST00000254630 FMNL3Q8IVF7 1028 aa9.79□□□□□ -0.84
PTCD3-201ENST00000254630 EXOC7Q9UPT5 735 aa9.79□□□□□ -0.84
PTCD3-201ENST00000254630 CCDC169A6NNP5 214 aa9.79□□□□□ -0.84
PTCD3-201ENST00000254630 SMTNP53814 917 aa9.79□□□□□ -0.84
PTCD3-201ENST00000254630 ZYXQ15942 572 aaKnown RBP9.79□□□□□ -0.84
PTCD3-201ENST00000254630 HAUS3Q68CZ6 603 aa9.79□□□□□ -0.84
PTCD3-201ENST00000254630 LPIN2Q92539 896 aa9.79□□□□□ -0.84
PTCD3-201ENST00000254630 IFT74Q96LB3 600 aa9.79□□□□□ -0.84
PTCD3-201ENST00000254630 FNBP1Q96RU3 617 aa9.79□□□□□ -0.84
PTCD3-201ENST00000254630 ATP2A1O14983 1001 aa9.79□□□□□ -0.84
PTCD3-201ENST00000254630 ZBTB7BO15156 539 aaPredicted RBP9.79□□□□□ -0.84
PTCD3-201ENST00000254630 OPA1O60313 960 aa9.79□□□□□ -0.84
PTCD3-201ENST00000254630 PPP1R2P41236 205 aa9.79□□□□□ -0.84
PTCD3-201ENST00000254630 GCKRQ14397 625 aa9.79□□□□□ -0.84
PTCD3-201ENST00000254630 CCDC186Q7Z3E2 898 aa9.79□□□□□ -0.84
PTCD3-201ENST00000254630 ORAI2Q96SN7 254 aa9.79□□□□□ -0.84
PTCD3-201ENST00000254630 SELENOSQ9BQE4 189 aa9.79□□□□□ -0.84
PTCD3-201ENST00000254630 NEO1Q92859 1461 aa9.79□□□□□ -0.84
PTCD3-201ENST00000254630 HARSP12081 509 aaKnown RBP9.79□□□□□ -0.84
PTCD3-201ENST00000254630 PRIM1P49642 420 aaKnown RBP9.79□□□□□ -0.84
PTCD3-201ENST00000254630 CDAN1Q8IWY9 1227 aa9.79□□□□□ -0.84
PTCD3-201ENST00000254630 CCDC42Q96M95 316 aa9.79□□□□□ -0.84
PTCD3-201ENST00000254630 CCDC77Q9BR77 488 aa9.79□□□□□ -0.84
PTCD3-201ENST00000254630 DDX39AO00148 427 aaKnown RBP9.79□□□□□ -0.84
PTCD3-201ENST00000254630 KARSQ15046 597 aaKnown RBP9.79□□□□□ -0.84
PTCD3-201ENST00000254630 PPP1R7Q15435 360 aa9.79□□□□□ -0.84
PTCD3-201ENST00000254630 TICAM2Q86XR7 235 aa9.79□□□□□ -0.84
PTCD3-201ENST00000254630 LARGE2Q8N3Y3 721 aa9.79□□□□□ -0.84
PTCD3-201ENST00000254630 APPBP2Q92624 585 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms