RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 MAP3K15Q6ZN16 1313 aa24.69■■□□□ 1.54
TRIM28-201ENST00000253024 RANBP6O60518 1105 aaKnown RBP24.69■■□□□ 1.54
TRIM28-201ENST00000253024 ZFYP08048 801 aaPredicted RBP24.69■■□□□ 1.54
TRIM28-201ENST00000253024 LRRFIP1Q32MZ4 808 aaKnown RBP24.69■■□□□ 1.54
TRIM28-201ENST00000253024 DZIP3Q86Y13 1208 aaKnown RBP24.69■■□□□ 1.54
TRIM28-201ENST00000253024 NAT10Q9H0A0 1025 aaKnown RBP24.69■■□□□ 1.54
TRIM28-201ENST00000253024 MINDY4BA8MYZ0 360 aa24.69■■□□□ 1.54
TRIM28-201ENST00000253024 ZBTB43O43298 467 aa24.69■■□□□ 1.54
TRIM28-201ENST00000253024 ARHGAP30Q7Z6I6 1101 aaPredicted RBP24.69■■□□□ 1.54
TRIM28-201ENST00000253024 KCNG4Q8TDN1 519 aa24.69■■□□□ 1.54
TRIM28-201ENST00000253024 CARD10Q9BWT7 1032 aa24.69■■□□□ 1.54
TRIM28-201ENST00000253024 ZSWIM5Q9P217 1185 aa24.69■■□□□ 1.54
TRIM28-201ENST00000253024 ADAMTS7Q9UKP4 1686 aa24.68■■□□□ 1.54
TRIM28-201ENST00000253024 BTBD18B2RXH4 712 aa24.68■■□□□ 1.54
TRIM28-201ENST00000253024 PDE8BO95263 885 aa24.68■■□□□ 1.54
TRIM28-201ENST00000253024 IARSP41252 1262 aaKnown RBP24.68■■□□□ 1.54
TRIM28-201ENST00000253024 AXDND1Q5T1B0 1012 aaPredicted RBP24.68■■□□□ 1.54
TRIM28-201ENST00000253024 LRRN4CLQ8ND94 238 aa24.67■■□□□ 1.54
TRIM28-201ENST00000253024 EPB41L4AQ9HCS5 686 aaPredicted RBP24.67■■□□□ 1.54
TRIM28-201ENST00000253024 CSF1RP07333 972 aa24.67■■□□□ 1.54
TRIM28-201ENST00000253024 TDO2P48775 406 aa24.67■■□□□ 1.54
TRIM28-201ENST00000253024 RASGRF1Q13972 1273 aa24.67■■□□□ 1.54
TRIM28-201ENST00000253024 SHC4Q6S5L8 630 aa24.67■■□□□ 1.54
TRIM28-201ENST00000253024 SDR42E1Q8WUS8 393 aa24.67■■□□□ 1.54
TRIM28-201ENST00000253024 MRFAP1L1Q96HT8 127 aa24.67■■□□□ 1.54
TRIM28-201ENST00000253024 COL18A1P39060 1754 aa24.67■■□□□ 1.54
TRIM28-201ENST00000253024 UBN2Q6ZU65 1347 aa24.67■■□□□ 1.54
TRIM28-201ENST00000253024 JAG2Q9Y219 1238 aa24.66■■□□□ 1.54
TRIM28-201ENST00000253024 RIC1Q4ADV7 1423 aa24.66■■□□□ 1.54
TRIM28-201ENST00000253024 COBLO75128 1261 aa24.66■■□□□ 1.54
TRIM28-201ENST00000253024 PRDM1O75626 825 aa24.66■■□□□ 1.54
TRIM28-201ENST00000253024 SERPINC1P01008 464 aa24.66■■□□□ 1.54
TRIM28-201ENST00000253024 NR5A1Q13285 461 aa24.66■■□□□ 1.54
TRIM28-201ENST00000253024 ARMCX5Q6P1M9 558 aa24.66■■□□□ 1.54
TRIM28-201ENST00000253024 TRMT44Q8IYL2 757 aaKnown RBP24.66■■□□□ 1.54
TRIM28-201ENST00000253024 CCDC24Q8N4L8 307 aa24.66■■□□□ 1.54
TRIM28-201ENST00000253024 MPHOSPH8Q99549 860 aa24.66■■□□□ 1.54
TRIM28-201ENST00000253024 TMEM232C9JQI7 657 aa24.66■■□□□ 1.54
TRIM28-201ENST00000253024 LONRF3Q496Y0 759 aa24.66■■□□□ 1.54
TRIM28-201ENST00000253024 MTERF4Q7Z6M4 381 aaKnown RBP24.66■■□□□ 1.54
TRIM28-201ENST00000253024 SH2B2O14492 632 aaPredicted RBP24.65■■□□□ 1.54
TRIM28-201ENST00000253024 CFAP100Q494V2 611 aa24.65■■□□□ 1.54
TRIM28-201ENST00000253024 SYT10Q6XYQ8 523 aa24.65■■□□□ 1.54
TRIM28-201ENST00000253024 SLC12A7Q9Y666 1083 aa24.65■■□□□ 1.54
TRIM28-201ENST00000253024 KCPQ6ZWJ8 1503 aa24.65■■□□□ 1.54
TRIM28-201ENST00000253024 CYP2D7A0A087X1C5 515 aa24.65■■□□□ 1.54
TRIM28-201ENST00000253024 SMTNL1A8MU46 457 aa24.65■■□□□ 1.54
TRIM28-201ENST00000253024 TRIM29Q14134 588 aa24.65■■□□□ 1.54
TRIM28-201ENST00000253024 POLR3EQ9NVU0 708 aa24.65■■□□□ 1.54
TRIM28-201ENST00000253024 COL5A2P05997 1499 aaPredicted RBP24.65■■□□□ 1.54
TRIM28-201ENST00000253024 LCORLQ8N3X6 602 aa24.64■■□□□ 1.54
TRIM28-201ENST00000253024 BAZ2BQ9UIF8 2168 aaKnown RBP24.64■■□□□ 1.54
TRIM28-201ENST00000253024 CASP1P29466 404 aa24.64■■□□□ 1.53
TRIM28-201ENST00000253024 HOMER1Q86YM7 354 aa24.64■■□□□ 1.53
TRIM28-201ENST00000253024 ELF2Q15723 593 aa24.63■■□□□ 1.53
TRIM28-201ENST00000253024 BICDL1Q6ZP65 573 aa24.63■■□□□ 1.53
TRIM28-201ENST00000253024 IFNL3Q8IZI9 196 aa24.63■■□□□ 1.53
TRIM28-201ENST00000253024 SARM1Q6SZW1 724 aa24.63■■□□□ 1.53
TRIM28-201ENST00000253024 SPATA5Q8NB90 893 aa24.63■■□□□ 1.53
TRIM28-201ENST00000253024 STRBPQ96SI9 672 aaKnown RBP24.63■■□□□ 1.53
TRIM28-201ENST00000253024 GLI3P10071 1580 aa24.63■■□□□ 1.53
TRIM28-201ENST00000253024 FAM205CA6NFA0 338 aa24.63■■□□□ 1.53
TRIM28-201ENST00000253024 CCAR2Q8N163 923 aaKnown RBP24.63■■□□□ 1.53
TRIM28-201ENST00000253024 SLC4A4Q9Y6R1 1079 aa24.63■■□□□ 1.53
TRIM28-201ENST00000253024 SFPQP23246 707 aaKnown RBP eCLIP24.62■■□□□ 1.53
TRIM28-201ENST00000253024 FANCCQ00597 558 aa24.62■■□□□ 1.53
TRIM28-201ENST00000253024 LRP2BPQ9P2M1 347 aa24.62■■□□□ 1.53
TRIM28-201ENST00000253024 ZMYM6O95789 1325 aa24.62■■□□□ 1.53
TRIM28-201ENST00000253024 EVX2Q03828 476 aa24.62■■□□□ 1.53
TRIM28-201ENST00000253024 SUSD4Q5VX71 490 aa24.62■■□□□ 1.53
TRIM28-201ENST00000253024 USP49Q70CQ1 688 aa24.62■■□□□ 1.53
TRIM28-201ENST00000253024 CNNM3Q8NE01 707 aa24.62■■□□□ 1.53
TRIM28-201ENST00000253024 LY9Q9HBG7 655 aa24.62■■□□□ 1.53
TRIM28-201ENST00000253024 ZNF142P52746 1687 aaPredicted RBP24.61■■□□□ 1.53
TRIM28-201ENST00000253024 YEATS4O95619 227 aa24.61■■□□□ 1.53
TRIM28-201ENST00000253024 CYP19A1P11511 503 aaPredicted RBP24.61■■□□□ 1.53
TRIM28-201ENST00000253024 NKX1-1Q15270 411 aaPredicted RBP24.61■■□□□ 1.53
TRIM28-201ENST00000253024 FOXP4Q8IVH2 680 aaPredicted RBP24.61■■□□□ 1.53
TRIM28-201ENST00000253024 OXER1Q8TDS5 423 aa24.61■■□□□ 1.53
TRIM28-201ENST00000253024 FAM217BQ9NTX9 383 aaPredicted RBP24.61■■□□□ 1.53
TRIM28-201ENST00000253024 FANCLQ9NW38 375 aa24.61■■□□□ 1.53
TRIM28-201ENST00000253024 CPDO75976 1380 aa24.61■■□□□ 1.53
TRIM28-201ENST00000253024 SLC39A14Q15043 492 aa24.61■■□□□ 1.53
TRIM28-201ENST00000253024 E4F1Q66K89 784 aaPredicted RBP24.61■■□□□ 1.53
TRIM28-201ENST00000253024 CPLX2Q6PUV4 134 aaKnown RBP24.61■■□□□ 1.53
TRIM28-201ENST00000253024 BRAPQ7Z569 592 aa24.61■■□□□ 1.53
TRIM28-201ENST00000253024 CREBRFQ8IUR6 639 aa24.61■■□□□ 1.53
TRIM28-201ENST00000253024 IGDCC4Q8TDY8 1250 aa24.61■■□□□ 1.53
TRIM28-201ENST00000253024 NWD2Q9ULI1 1742 aa24.61■■□□□ 1.53
TRIM28-201ENST00000253024 ADAMTS2O95450 1211 aa24.6■■□□□ 1.53
TRIM28-201ENST00000253024 PDE4BQ07343 736 aa24.6■■□□□ 1.53
TRIM28-201ENST00000253024 STAMQ92783 540 aa24.6■■□□□ 1.53
TRIM28-201ENST00000253024 MTMR7Q9Y216 660 aa24.6■■□□□ 1.53
TRIM28-201ENST00000253024 TJP1Q07157 1748 aa24.6■■□□□ 1.53
TRIM28-201ENST00000253024 A0A1W2PQ27 194 aa24.6■■□□□ 1.53
TRIM28-201ENST00000253024 A0A1W2PQ64 194 aa24.6■■□□□ 1.53
TRIM28-201ENST00000253024 A0A1W2PQD8 194 aa24.6■■□□□ 1.53
TRIM28-201ENST00000253024 NLRP12P59046 1061 aa24.6■■□□□ 1.53
TRIM28-201ENST00000253024 NCAPHQ15003 741 aa24.6■■□□□ 1.53
TRIM28-201ENST00000253024 VGLL2Q8N8G2 317 aa24.6■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms