RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 NAP1L3Q99457 506 aaPredicted RBP15.24■□□□□ 0.03
SF3A1-201ENST00000215793 KCNH3Q9ULD8 1083 aa15.24■□□□□ 0.03
SF3A1-201ENST00000215793 BACH1O14867 736 aa15.23■□□□□ 0.03
SF3A1-201ENST00000215793 PLS1Q14651 629 aa15.23■□□□□ 0.03
SF3A1-201ENST00000215793 SLC27A2O14975 620 aa15.23■□□□□ 0.03
SF3A1-201ENST00000215793 CNNM4Q6P4Q7 775 aa15.23■□□□□ 0.03
SF3A1-201ENST00000215793 CPLX4Q7Z7G2 160 aa15.23■□□□□ 0.03
SF3A1-201ENST00000215793 NBPF11Q86T75 865 aa15.23■□□□□ 0.03
SF3A1-201ENST00000215793 RAB3IL1Q8TBN0 382 aa15.23■□□□□ 0.03
SF3A1-201ENST00000215793 IFT81Q8WYA0 676 aa15.23■□□□□ 0.03
SF3A1-201ENST00000215793 SELENOSQ9BQE4 189 aa15.23■□□□□ 0.03
SF3A1-201ENST00000215793 NOC4LQ9BVI4 516 aaKnown RBP15.23■□□□□ 0.03
SF3A1-201ENST00000215793 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.23■□□□□ 0.034e-8■■■□□ 16.1
SF3A1-201ENST00000215793 ASXL2Q76L83 1435 aa15.23■□□□□ 0.03
SF3A1-201ENST00000215793 RAPGEF6Q8TEU7 1601 aa15.23■□□□□ 0.03
SF3A1-201ENST00000215793 B4E1Z4 1266 aa15.23■□□□□ 0.03
SF3A1-201ENST00000215793 EPB41P11171 864 aaKnown RBP15.23■□□□□ 0.03
SF3A1-201ENST00000215793 RAPGEF1Q13905 1077 aa15.23■□□□□ 0.03
SF3A1-201ENST00000215793 HAUS3Q68CZ6 603 aa15.23■□□□□ 0.03
SF3A1-201ENST00000215793 CCDC63Q8NA47 563 aa15.23■□□□□ 0.03
SF3A1-201ENST00000215793 NPC1L1Q9UHC9 1359 aa15.23■□□□□ 0.03
SF3A1-201ENST00000215793 RHOXF2BP0C7M4 288 aa15.23■□□□□ 0.03
SF3A1-201ENST00000215793 PPP1R7Q15435 360 aa15.23■□□□□ 0.03
SF3A1-201ENST00000215793 PLIN2Q99541 437 aa15.23■□□□□ 0.03
SF3A1-201ENST00000215793 RHOXF2Q9BQY4 288 aa15.23■□□□□ 0.03
SF3A1-201ENST00000215793 ZKSCAN3Q9BRR0 538 aa15.23■□□□□ 0.03
SF3A1-201ENST00000215793 SYCP2Q9BX26 1530 aa15.23■□□□□ 0.03
SF3A1-201ENST00000215793 UBAP1LF5GYI3 381 aa15.22■□□□□ 0.03
SF3A1-201ENST00000215793 ARL1P40616 181 aaPredicted RBP15.22■□□□□ 0.03
SF3A1-201ENST00000215793 DCAF17Q5H9S7 520 aaPredicted RBP15.22■□□□□ 0.03
SF3A1-201ENST00000215793 IGSF22Q8N9C0 903 aa15.22■□□□□ 0.03
SF3A1-201ENST00000215793 CCDC26Q8TAB7 109 aa15.22■□□□□ 0.03
SF3A1-201ENST00000215793 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.22■□□□□ 0.03
SF3A1-201ENST00000215793 FAM89AQ96GI7 184 aa15.22■□□□□ 0.03
SF3A1-201ENST00000215793 CDCA7Q9BWT1 371 aaPredicted RBP15.22■□□□□ 0.03
SF3A1-201ENST00000215793 TFCP2L1Q9NZI6 479 aa15.22■□□□□ 0.03
SF3A1-201ENST00000215793 TBX22Q9Y458 520 aa15.22■□□□□ 0.03
SF3A1-201ENST00000215793 ITSN2Q9NZM3 1697 aa15.22■□□□□ 0.03
SF3A1-201ENST00000215793 PER1O15534 1290 aaPredicted RBP15.22■□□□□ 0.03
SF3A1-201ENST00000215793 FAM212AQ96EL1 285 aa15.22■□□□□ 0.03
SF3A1-201ENST00000215793 C8orf37Q96NL8 207 aa15.22■□□□□ 0.03
SF3A1-201ENST00000215793 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.22■□□□□ 0.03
SF3A1-201ENST00000215793 TLDC2A0PJX2 215 aa15.22■□□□□ 0.03
SF3A1-201ENST00000215793 NDC80O14777 642 aa15.22■□□□□ 0.03
SF3A1-201ENST00000215793 SGSM2O43147 1006 aa15.22■□□□□ 0.03
SF3A1-201ENST00000215793 ITGA6P23229 1130 aa15.22■□□□□ 0.03
SF3A1-201ENST00000215793 SEL1L2Q5TEA6 688 aa15.22■□□□□ 0.03
SF3A1-201ENST00000215793 G2E3Q7L622 706 aa15.22■□□□□ 0.03
SF3A1-201ENST00000215793 HDXQ7Z353 690 aa15.22■□□□□ 0.03
SF3A1-201ENST00000215793 OTUD6BQ8N6M0 293 aa15.22■□□□□ 0.03
SF3A1-201ENST00000215793 TTF2Q9UNY4 1162 aaKnown RBP15.22■□□□□ 0.03
SF3A1-201ENST00000215793 CUTAO60888 179 aa15.22■□□□□ 0.03
SF3A1-201ENST00000215793 SEC24BO95487 1268 aa15.22■□□□□ 0.03
SF3A1-201ENST00000215793 CPA1P15085 419 aa15.22■□□□□ 0.03
SF3A1-201ENST00000215793 CCDC14Q49A88 953 aa15.22■□□□□ 0.03
SF3A1-201ENST00000215793 MLKLQ8NB16 471 aa15.22■□□□□ 0.03
SF3A1-201ENST00000215793 DBNDD2Q9BQY9 259 aa15.22■□□□□ 0.03
SF3A1-201ENST00000215793 CSRNP2Q9H175 543 aa15.22■□□□□ 0.03
SF3A1-201ENST00000215793 YTHDC2Q9H6S0 1430 aaKnown RBP15.21■□□□□ 0.03
SF3A1-201ENST00000215793 HIBADHP31937 336 aaKnown RBP15.21■□□□□ 0.03
SF3A1-201ENST00000215793 PDE4DQ08499 809 aa15.21■□□□□ 0.03
SF3A1-201ENST00000215793 APBB1IPQ7Z5R6 666 aaPredicted RBP15.21■□□□□ 0.03
SF3A1-201ENST00000215793 ERO1AQ96HE7 468 aa15.21■□□□□ 0.03
SF3A1-201ENST00000215793 VPS18Q9P253 973 aa15.21■□□□□ 0.03
SF3A1-201ENST00000215793 CHL1O00533 1208 aa15.21■□□□□ 0.03
SF3A1-201ENST00000215793 MAP3K9P80192 1104 aa15.21■□□□□ 0.03
SF3A1-201ENST00000215793 KIFAP3Q92845 792 aa15.21■□□□□ 0.03
SF3A1-201ENST00000215793 RBM17Q96I25 401 aaKnown RBP15.21■□□□□ 0.03
SF3A1-201ENST00000215793 PDE8AO60658 829 aa15.21■□□□□ 0.02
SF3A1-201ENST00000215793 DIS3L2Q8IYB7 885 aaKnown RBP15.21■□□□□ 0.02
SF3A1-201ENST00000215793 KBTBD3Q8NAB2 608 aa15.21■□□□□ 0.02
SF3A1-201ENST00000215793 ARHGEF12Q9NZN5 1544 aa15.2■□□□□ 0.02
SF3A1-201ENST00000215793 ALDH3A1P30838 453 aa15.2■□□□□ 0.02
SF3A1-201ENST00000215793 CCT6AP40227 531 aaKnown RBP15.2■□□□□ 0.02
SF3A1-201ENST00000215793 CLSTN2Q9H4D0 955 aa15.2■□□□□ 0.02
SF3A1-201ENST00000215793 STK24Q9Y6E0 443 aa15.2■□□□□ 0.02
SF3A1-201ENST00000215793 ABCC10Q5T3U5 1492 aa15.2■□□□□ 0.02
SF3A1-201ENST00000215793 RIMBP2O15034 1052 aa15.2■□□□□ 0.02
SF3A1-201ENST00000215793 ZEB2O60315 1214 aa15.2■□□□□ 0.02
SF3A1-201ENST00000215793 PPP2R3AQ06190 1150 aa15.2■□□□□ 0.02
SF3A1-201ENST00000215793 WDR44Q5JSH3 913 aa15.2■□□□□ 0.02
SF3A1-201ENST00000215793 CEP128Q6ZU80 1094 aa15.2■□□□□ 0.02
SF3A1-201ENST00000215793 FAM76AQ8TAV0 307 aa15.2■□□□□ 0.02
SF3A1-201ENST00000215793 VTI1AQ96AJ9 217 aa15.2■□□□□ 0.02
SF3A1-201ENST00000215793 FNBP1Q96RU3 617 aa15.2■□□□□ 0.02
SF3A1-201ENST00000215793 SAMD15Q9P1V8 674 aa15.2■□□□□ 0.02
SF3A1-201ENST00000215793 ZBTB21Q9ULJ3 1066 aa15.2■□□□□ 0.02
SF3A1-201ENST00000215793 SNX14Q9Y5W7 946 aa15.2■□□□□ 0.02
SF3A1-201ENST00000215793 SBNO1A3KN83 1393 aa15.2■□□□□ 0.02
SF3A1-201ENST00000215793 GPAA1O43292 621 aa15.2■□□□□ 0.02
SF3A1-201ENST00000215793 SMTNP53814 917 aa15.2■□□□□ 0.02
SF3A1-201ENST00000215793 INF2Q27J81 1249 aa15.2■□□□□ 0.02
SF3A1-201ENST00000215793 DPH6Q7L8W6 267 aa15.2■□□□□ 0.02
SF3A1-201ENST00000215793 LEO1Q8WVC0 666 aaPredicted RBP15.2■□□□□ 0.02
SF3A1-201ENST00000215793 CETN3O15182 167 aa15.2■□□□□ 0.02
SF3A1-201ENST00000215793 EVCP57679 992 aa15.2■□□□□ 0.02
SF3A1-201ENST00000215793 TRAPPC3LQ5T215 181 aa15.2■□□□□ 0.02
SF3A1-201ENST00000215793 XAGE2Q96GT9 111 aa15.2■□□□□ 0.02
SF3A1-201ENST00000215793 FAM169AQ9Y6X4 670 aa15.2■□□□□ 0.02
SF3A1-201ENST00000215793 SETDB1Q15047 1291 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms