RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 FBXL19-AS1Q494R0 122 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 SMIM4Q8WVI0 70 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 ASCL2Q99929 193 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 MRPL18Q9H0U6 180 aaKnown RBP4.13□□□□□ -1.75
SCN1A-218ENST00000640036 FAM215AQ9Y5M1 114 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.13□□□□□ -1.75
SCN1A-218ENST00000640036 IGHV1-3A0A0C4DH29 117 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 C7orf71A4D174 169 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 FAM90A26D6RGX4 464 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 TGFBR3LH3BV60 316 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 LYL1P12980 280 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 TREML4Q6UXN2 200 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 LAX1Q8IWV1 398 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 SPATA25Q9BR10 227 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 CST9LQ9H4G1 147 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 DAZ1Q9NQZ3 744 aaKnown RBP4.13□□□□□ -1.75
SCN1A-218ENST00000640036 NYNRINQ9P2P1 1898 aaKnown RBP4.13□□□□□ -1.75
SCN1A-218ENST00000640036 CKS1BP61024 79 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 PRR31Q5SQ13 230 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 H7C2G1 150 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 NDUFS7O75251 213 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 SRSF10O75494 262 aaKnown RBP4.13□□□□□ -1.75
SCN1A-218ENST00000640036 IGFBP2P18065 325 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 SFTA2Q6UW10 78 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 SIGLEC15Q6ZMC9 328 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 GLMPQ8WWB7 406 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 JPT2Q9H910 190 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 A0A1B0GTI1 187 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 TMEM238C9JI98 176 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 NDUFB6O95139 128 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 PSG1P11464 419 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 DEFB131AP59861 70 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 IFITM3Q01628 133 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 OR4D11Q8NGI4 311 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 TM2D2Q9BX73 214 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 NPCDR1Q9BY65 106 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 DSPPQ9NZW4 1301 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 IGHV3OR16-8A0A075B7F1 116 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 EIF3GO75821 320 aaKnown RBP eCLIP4.12□□□□□ -1.75
SCN1A-218ENST00000640036 IGHV3-48P01763 117 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 IGHV4-39P01824 125 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 RPL36AP83881 106 aaKnown RBP4.12□□□□□ -1.75
SCN1A-218ENST00000640036 RPL39P5Q59GN2 51 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 TMEM91Q6ZNR0 172 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 OR11H4Q8NGC9 324 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 RPL36ALQ969Q0 106 aaKnown RBP4.12□□□□□ -1.75
SCN1A-218ENST00000640036 ANAPC13Q9BS18 74 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 SPCS1Q9Y6A9 102 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 PPBPP02775 128 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 ZNF680Q8NEM1 530 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 ZNF414Q96IQ9 312 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 SLIRPQ9GZT3 109 aaKnown RBP4.12□□□□□ -1.75
SCN1A-218ENST00000640036 SPART-AS1P0CW21 52 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 SRIP30626 198 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 PVRIGQ6DKI7 326 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 FGFRL1Q8N441 504 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 TMEM252Q8N6L7 170 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 TAF15Q92804 592 aaKnown RBP eCLIP4.12□□□□□ -1.75
SCN1A-218ENST00000640036 VENTXO95231 258 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 HILS1P60008 231 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 POLR2GP62487 172 aaKnown RBP eCLIP4.12□□□□□ -1.75
SCN1A-218ENST00000640036 C4orf48Q5BLP8 95 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 OR1P1Q8NH06 330 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 MZB1Q8WU39 189 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 TOMM7Q9P0U1 55 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 C4orf51C9J302 202 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 C12orf77C9JDV5 145 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 CD74P04233 296 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 RNF224P0DH78 156 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 IFI27P40305 119 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-218ENST00000640036 RPL15P61313 204 aaKnown RBP4.12□□□□□ -1.75
SCN1A-218ENST00000640036 FAM219BQ5XKK7 198 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 TTC9CQ8N5M4 171 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 Q8NA96 180 aa4.12□□□□□ -1.75
SCN1A-218ENST00000640036 HGFACQ04756 655 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 C2orf83Q53S99 150 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 C1QL4Q86Z23 238 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 FLVCR1-AS1Q8TAF5 88 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 UBE2WQ96B02 151 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 ZNF837Q96EG3 531 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-218ENST00000640036 LAMTOR3Q9UHA4 124 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 NPIPB9F8W1W9 429 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 FGF16O43320 207 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 NPIPB7O75200 414 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 TOMM40O96008 361 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 FUT5Q11128 374 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 IRF3Q14653 427 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 ZNF506Q5JVG8 444 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 CLEC18BQ6UXF7 455 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 HOGA1Q86XE5 327 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 NDUFA11Q86Y39 141 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 CACNG8Q8WXS5 425 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 VOPP1Q96AW1 172 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 SDHCQ99643 169 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-218ENST00000640036 A0A0G2JK05 382 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 ZNF345Q14585 488 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 IGSF11Q5DX21 431 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 ACANP16112 2415 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 EFNB1P98172 346 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 COL4A4P53420 1690 aaPredicted RBP4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms