RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 TRBV6-1A0A0K0K1D8 114 aa10.14□□□□□ -0.79
LINC00540-203ENST00000631321 FAM231BA6NCW3 169 aa10.14□□□□□ -0.79
LINC00540-203ENST00000631321 NPIPB6E9PJ23 425 aa10.14□□□□□ -0.79
LINC00540-203ENST00000631321 LYNX1G3V0Z9 82 aa10.14□□□□□ -0.79
LINC00540-203ENST00000631321 LYNX1P0DP58 116 aa10.14□□□□□ -0.79
LINC00540-203ENST00000631321 LEMD1Q68G75 181 aa10.14□□□□□ -0.79
LINC00540-203ENST00000631321 SGK494Q96LW2 274 aa10.14□□□□□ -0.79
LINC00540-203ENST00000631321 SLC25A39Q9BZJ4 359 aaPredicted RBP10.14□□□□□ -0.79
LINC00540-203ENST00000631321 P01737 135 aa10.14□□□□□ -0.79
LINC00540-203ENST00000631321 RPLP1P05386 114 aaKnown RBP10.14□□□□□ -0.79
LINC00540-203ENST00000631321 PRB3Q04118 309 aaPredicted RBP10.14□□□□□ -0.79
LINC00540-203ENST00000631321 SPATA45Q537H7 98 aa10.14□□□□□ -0.79
LINC00540-203ENST00000631321 TCF24Q7RTU0 167 aa10.14□□□□□ -0.79
LINC00540-203ENST00000631321 LY6G5BQ8NDX9 201 aa10.14□□□□□ -0.79
LINC00540-203ENST00000631321 GTSF1Q8WW33 167 aa10.14□□□□□ -0.79
LINC00540-203ENST00000631321 BORCS7Q96B45 105 aa10.14□□□□□ -0.79
LINC00540-203ENST00000631321 RPH3ALQ9UNE2 315 aa10.14□□□□□ -0.79
LINC00540-203ENST00000631321 ZFHX2Q9C0A1 2572 aaPredicted RBP10.13□□□□□ -0.79
LINC00540-203ENST00000631321 PCNX1Q96RV3 2341 aa10.13□□□□□ -0.79
LINC00540-203ENST00000631321 ADGRG4Q8IZF6 3080 aa10.13□□□□□ -0.79
LINC00540-203ENST00000631321 K7ENP7 123 aa10.13□□□□□ -0.79
LINC00540-203ENST00000631321 IGKV1-17P01599 117 aa10.13□□□□□ -0.79
LINC00540-203ENST00000631321 COX7A1P24310 79 aa10.13□□□□□ -0.79
LINC00540-203ENST00000631321 CAMPP49913 170 aa10.13□□□□□ -0.79
LINC00540-203ENST00000631321 LYZP61626 148 aa10.13□□□□□ -0.79
LINC00540-203ENST00000631321 FBXL19-AS1Q494R0 122 aa10.13□□□□□ -0.79
LINC00540-203ENST00000631321 C16orf54Q6UWD8 224 aa10.13□□□□□ -0.79
LINC00540-203ENST00000631321 Q86TA4 180 aa10.13□□□□□ -0.79
LINC00540-203ENST00000631321 MUC15Q8N387 334 aa10.13□□□□□ -0.79
LINC00540-203ENST00000631321 SSBP4Q9BWG4 385 aaPredicted RBP10.13□□□□□ -0.79
LINC00540-203ENST00000631321 GVINP1Q7Z2Y8 2422 aa10.13□□□□□ -0.79
LINC00540-203ENST00000631321 NTF3P20783 257 aa10.13□□□□□ -0.79
LINC00540-203ENST00000631321 GPR6P46095 362 aaPredicted RBP10.13□□□□□ -0.79
LINC00540-203ENST00000631321 FAM162BQ5T6X4 162 aa10.13□□□□□ -0.79
LINC00540-203ENST00000631321 WNT10AQ9GZT5 417 aa10.13□□□□□ -0.79
LINC00540-203ENST00000631321 MALRD1Q5VYJ5 2156 aa10.12□□□□□ -0.79
LINC00540-203ENST00000631321 FAM181BA6NEQ2 426 aa10.12□□□□□ -0.79
LINC00540-203ENST00000631321 H3BTX0 84 aa10.12□□□□□ -0.79
LINC00540-203ENST00000631321 HSBP1O75506 76 aa10.12□□□□□ -0.79
LINC00540-203ENST00000631321 IGLV2-11P01706 119 aa10.12□□□□□ -0.79
LINC00540-203ENST00000631321 IGLC2P0DOY2 106 aa10.12□□□□□ -0.79
LINC00540-203ENST00000631321 IGLC3P0DOY3 106 aa10.12□□□□□ -0.79
LINC00540-203ENST00000631321 RBPMS2Q6ZRY4 209 aaKnown RBP10.12□□□□□ -0.79
LINC00540-203ENST00000631321 OR8B3Q8NGG8 313 aa10.12□□□□□ -0.79
LINC00540-203ENST00000631321 OR8B2Q96RD0 313 aa10.12□□□□□ -0.79
LINC00540-203ENST00000631321 RASL11BQ9BPW5 248 aa10.12□□□□□ -0.79
LINC00540-203ENST00000631321 UQCR10Q9UDW1 63 aa10.12□□□□□ -0.79
LINC00540-203ENST00000631321 APC2O95996 2303 aa10.12□□□□□ -0.79
LINC00540-203ENST00000631321 ATMQ13315 3056 aa10.12□□□□□ -0.79
LINC00540-203ENST00000631321 K7EIM0 57 aa10.12□□□□□ -0.79
LINC00540-203ENST00000631321 PMCHL1Q16048 86 aa10.12□□□□□ -0.79
LINC00540-203ENST00000631321 LDLRAD2Q5SZI1 272 aa10.12□□□□□ -0.79
LINC00540-203ENST00000631321 LINC01560Q8TB33 94 aa10.12□□□□□ -0.79
LINC00540-203ENST00000631321 URB1-AS1Q96HZ7 61 aa10.12□□□□□ -0.79
LINC00540-203ENST00000631321 SHANK2-AS3Q9BTD1 123 aa10.12□□□□□ -0.79
LINC00540-203ENST00000631321 SIAH2O43255 324 aa10.11□□□□□ -0.79
LINC00540-203ENST00000631321 LIPFP07098 398 aa10.11□□□□□ -0.79
LINC00540-203ENST00000631321 ZNF672Q499Z4 452 aaPredicted RBP10.11□□□□□ -0.79
LINC00540-203ENST00000631321 DAZAP1Q96EP5 407 aaKnown RBP10.11□□□□□ -0.79
LINC00540-203ENST00000631321 RNF24Q9Y225 148 aa10.11□□□□□ -0.79
LINC00540-203ENST00000631321 A6NNC1 897 aa10.11□□□□□ -0.79
LINC00540-203ENST00000631321 H3BRN7 92 aa10.11□□□□□ -0.79
LINC00540-203ENST00000631321 M0R2Z0 102 aa10.11□□□□□ -0.79
LINC00540-203ENST00000631321 TIMM23O14925 209 aa10.11□□□□□ -0.79
LINC00540-203ENST00000631321 EBLN2Q6P2I7 272 aa10.11□□□□□ -0.79
LINC00540-203ENST00000631321 OR11H6Q8NGC7 330 aa10.11□□□□□ -0.79
LINC00540-203ENST00000631321 OR2D3Q8NGH3 330 aa10.11□□□□□ -0.79
LINC00540-203ENST00000631321 TRBV19A0A075B6N1 114 aa10.1□□□□□ -0.79
LINC00540-203ENST00000631321 C2orf70A6NJV1 201 aa10.1□□□□□ -0.79
LINC00540-203ENST00000631321 FOXA3P55318 350 aaPredicted RBP10.1□□□□□ -0.79
LINC00540-203ENST00000631321 PLGLAQ15195 96 aa10.1□□□□□ -0.79
LINC00540-203ENST00000631321 RNASEKQ6P5S7 137 aaKnown RBP10.1□□□□□ -0.79
LINC00540-203ENST00000631321 KLHDC1Q8N7A1 406 aa10.1□□□□□ -0.79
LINC00540-203ENST00000631321 NPBQ8NG41 125 aa10.1□□□□□ -0.79
LINC00540-203ENST00000631321 PGLYRP4Q96LB8 373 aa10.1□□□□□ -0.79
LINC00540-203ENST00000631321 SCNM1Q9BWG6 230 aa10.1□□□□□ -0.79
LINC00540-203ENST00000631321 OVOL3O00110 214 aa10.09□□□□□ -0.79
LINC00540-203ENST00000631321 NDUFA3O95167 84 aa10.09□□□□□ -0.79
LINC00540-203ENST00000631321 APOHP02749 345 aaPredicted RBP10.09□□□□□ -0.79
LINC00540-203ENST00000631321 BTF3P20290 206 aaKnown RBP10.09□□□□□ -0.79
LINC00540-203ENST00000631321 ZNF124Q15973 351 aa10.09□□□□□ -0.79
LINC00540-203ENST00000631321 LYPD1Q8N2G4 141 aa10.09□□□□□ -0.79
LINC00540-203ENST00000631321 CFHR4Q92496 578 aa10.09□□□□□ -0.79
LINC00540-203ENST00000631321 ONECUT1Q9UBC0 465 aa10.09□□□□□ -0.79
LINC00540-203ENST00000631321 TRAV8-1A0A0A6YYK1 113 aa10.09□□□□□ -0.79
LINC00540-203ENST00000631321 C20orf202A1L168 122 aa10.09□□□□□ -0.79
LINC00540-203ENST00000631321 ZNF785A8K8V0 405 aa10.09□□□□□ -0.79
LINC00540-203ENST00000631321 HAX1O00165 279 aa10.09□□□□□ -0.79
LINC00540-203ENST00000631321 CNIH1O95406 144 aa10.09□□□□□ -0.79
LINC00540-203ENST00000631321 GAGE1Q13065 139 aa10.09□□□□□ -0.79
LINC00540-203ENST00000631321 FAM120AOSQ5T036 256 aa10.09□□□□□ -0.79
LINC00540-203ENST00000631321 LCN12Q6JVE5 192 aa10.09□□□□□ -0.79
LINC00540-203ENST00000631321 GOLT1AQ6ZVE7 132 aa10.09□□□□□ -0.79
LINC00540-203ENST00000631321 BPIFA4PQ86YQ2 179 aa10.09□□□□□ -0.79
LINC00540-203ENST00000631321 EXOC3-AS1Q8N2X6 119 aa10.09□□□□□ -0.79
LINC00540-203ENST00000631321 TMEM75Q8N9X5 138 aa10.09□□□□□ -0.79
LINC00540-203ENST00000631321 CHCHD1Q96BP2 118 aaKnown RBP10.09□□□□□ -0.79
LINC00540-203ENST00000631321 C1RLQ9NZP8 487 aa10.09□□□□□ -0.79
LINC00540-203ENST00000631321 DPM3Q9P2X0 92 aa10.09□□□□□ -0.79
LINC00540-203ENST00000631321 PIEZO2Q9H5I5 2752 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms