RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 RNF11Q9Y3C5 154 aa-0.27□□□□□ -2.45
SCN1A-208ENST00000625916 COL6A5A8TX70 2615 aa-0.27□□□□□ -2.45
SCN1A-208ENST00000625916 HERC2O95714 4834 aa-0.27□□□□□ -2.45
SCN1A-208ENST00000625916 HECW1Q76N89 1606 aa-0.27□□□□□ -2.45
SCN1A-208ENST00000625916 CHD3Q12873 2000 aaKnown RBP-0.28□□□□□ -2.45
SCN1A-208ENST00000625916 SCN10AQ9Y5Y9 1956 aa-0.28□□□□□ -2.45
SCN1A-208ENST00000625916 PTPN13Q12923 2485 aa-0.28□□□□□ -2.45
SCN1A-208ENST00000625916 TRAV23DV6A0A075B6W5 121 aa-0.28□□□□□ -2.45
SCN1A-208ENST00000625916 TRAV10A0A0B4J240 114 aa-0.28□□□□□ -2.45
SCN1A-208ENST00000625916 OR4C46A6NHA9 309 aa-0.28□□□□□ -2.45
SCN1A-208ENST00000625916 TIMM17BO60830 172 aa-0.28□□□□□ -2.45
SCN1A-208ENST00000625916 PPYP01298 95 aa-0.28□□□□□ -2.45
SCN1A-208ENST00000625916 CCL4P13236 92 aa-0.28□□□□□ -2.45
SCN1A-208ENST00000625916 COX7CP15954 63 aa-0.28□□□□□ -2.45
SCN1A-208ENST00000625916 HIST3H3Q16695 136 aa-0.28□□□□□ -2.45
SCN1A-208ENST00000625916 GLIPR1L1Q6UWM5 242 aa-0.28□□□□□ -2.45
SCN1A-208ENST00000625916 Q8IYB0 196 aa-0.28□□□□□ -2.45
SCN1A-208ENST00000625916 TMEM86BQ8N661 226 aa-0.28□□□□□ -2.45
SCN1A-208ENST00000625916 PXT1Q8NFP0 134 aa-0.28□□□□□ -2.45
SCN1A-208ENST00000625916 OR5D14Q8NGL3 314 aa-0.28□□□□□ -2.45
SCN1A-208ENST00000625916 WFDC5Q8TCV5 224 aa-0.28□□□□□ -2.45
SCN1A-208ENST00000625916 LINC00467Q9BRT7 94 aa-0.28□□□□□ -2.45
SCN1A-208ENST00000625916 ACANP16112 2415 aa-0.28□□□□□ -2.45
SCN1A-208ENST00000625916 NEO1Q92859 1461 aa-0.29□□□□□ -2.46
SCN1A-208ENST00000625916 WRNQ14191 1432 aaPredicted RBP eCLIP-0.29□□□□□ -2.46
SCN1A-208ENST00000625916 BDP1A6H8Y1 2624 aa-0.29□□□□□ -2.46
SCN1A-208ENST00000625916 HEATR1Q9H583 2144 aaKnown RBP-0.29□□□□□ -2.46
SCN1A-208ENST00000625916 TNXBP22105 4242 aa-0.29□□□□□ -2.46
SCN1A-208ENST00000625916 TRAV26-2A0A0B4J265 109 aa-0.29□□□□□ -2.46
SCN1A-208ENST00000625916 JMJD7-PLA2G4BH0Y9G9 81 aa-0.29□□□□□ -2.46
SCN1A-208ENST00000625916 CD3DP04234 171 aa-0.29□□□□□ -2.46
SCN1A-208ENST00000625916 CALB1P05937 261 aa-0.29□□□□□ -2.46
SCN1A-208ENST00000625916 FAM172AQ8WUF8 416 aa-0.29□□□□□ -2.46
SCN1A-208ENST00000625916 ADAT3Q96EY9 351 aaPredicted RBP-0.29□□□□□ -2.46
SCN1A-208ENST00000625916 PRADC1Q9BSG0 188 aa-0.29□□□□□ -2.46
SCN1A-208ENST00000625916 MRPS26Q9BYN8 205 aaKnown RBP-0.29□□□□□ -2.46
SCN1A-208ENST00000625916 FBXO5Q9UKT4 447 aa-0.29□□□□□ -2.46
SCN1A-208ENST00000625916 TET1Q8NFU7 2136 aa-0.29□□□□□ -2.46
SCN1A-208ENST00000625916 TPRP12270 2363 aaKnown RBP-0.3□□□□□ -2.46
SCN1A-208ENST00000625916 FLNAP21333 2647 aaKnown RBP-0.3□□□□□ -2.46
SCN1A-208ENST00000625916 OTOGQ6ZRI0 2925 aa-0.3□□□□□ -2.46
SCN1A-208ENST00000625916 POLQO75417 2590 aa-0.3□□□□□ -2.46
SCN1A-208ENST00000625916 RIMBP3CA6NJZ7 1639 aa-0.3□□□□□ -2.46
SCN1A-208ENST00000625916 RIMBP3BA6NNM3 1639 aa-0.3□□□□□ -2.46
SCN1A-208ENST00000625916 RIMBP3Q9UFD9 1639 aa-0.3□□□□□ -2.46
SCN1A-208ENST00000625916 BPTFQ12830 3046 aa-0.3□□□□□ -2.46
SCN1A-208ENST00000625916 HECW2Q9P2P5 1572 aa-0.3□□□□□ -2.46
SCN1A-208ENST00000625916 ABCA2Q9BZC7 2435 aa-0.3□□□□□ -2.46
SCN1A-208ENST00000625916 TGIF2-C20orf24A0A0A6YYL0 155 aa-0.3□□□□□ -2.46
SCN1A-208ENST00000625916 ZNF727A8MUV8 499 aa-0.3□□□□□ -2.46
SCN1A-208ENST00000625916 J3QRK9 145 aa-0.3□□□□□ -2.46
SCN1A-208ENST00000625916 CYB5BO43169 146 aa-0.3□□□□□ -2.46
SCN1A-208ENST00000625916 TGOLN2O43493 480 aa-0.3□□□□□ -2.46
SCN1A-208ENST00000625916 ERC2-IT1O76042 136 aa-0.3□□□□□ -2.46
SCN1A-208ENST00000625916 SERPINE1P05121 402 aa-0.3□□□□□ -2.46
SCN1A-208ENST00000625916 AP3S2P59780 193 aa-0.3□□□□□ -2.46
SCN1A-208ENST00000625916 EIF5AP63241 154 aaKnown RBP-0.3□□□□□ -2.46
SCN1A-208ENST00000625916 ACOT6Q3I5F7 207 aaPredicted RBP-0.3□□□□□ -2.46
SCN1A-208ENST00000625916 C8orf74Q6P047 294 aa-0.3□□□□□ -2.46
SCN1A-208ENST00000625916 Q86TA4 180 aa-0.3□□□□□ -2.46
SCN1A-208ENST00000625916 DCUN1D1Q96GG9 259 aa-0.3□□□□□ -2.46
SCN1A-208ENST00000625916 C2orf50Q96LR7 162 aa-0.3□□□□□ -2.46
SCN1A-208ENST00000625916 MRPL27Q9P0M9 148 aaKnown RBP-0.3□□□□□ -2.46
SCN1A-208ENST00000625916 LY96Q9Y6Y9 160 aa-0.3□□□□□ -2.46
SCN1A-208ENST00000625916 MYO18AQ92614 2054 aaKnown RBP-0.3□□□□□ -2.46
SCN1A-208ENST00000625916 LRP2P98164 4655 aa-0.3□□□□□ -2.46
SCN1A-208ENST00000625916 BCL9O00512 1426 aa-0.3□□□□□ -2.46
SCN1A-208ENST00000625916 ZDBF2Q9HCK1 2354 aa-0.31□□□□□ -2.46
SCN1A-208ENST00000625916 ZFYVE26Q68DK2 2539 aa-0.31□□□□□ -2.46
SCN1A-208ENST00000625916 A8MWV9 139 aa-0.31□□□□□ -2.46
SCN1A-208ENST00000625916 FAM25EA8MYX2 175 aa-0.31□□□□□ -2.46
SCN1A-208ENST00000625916 SPINK1P00995 79 aa-0.31□□□□□ -2.46
SCN1A-208ENST00000625916 CXCL8P10145 99 aa-0.31□□□□□ -2.46
SCN1A-208ENST00000625916 HIST1H1EP10412 219 aaKnown RBP-0.31□□□□□ -2.46
SCN1A-208ENST00000625916 SRP14P37108 136 aaKnown RBP-0.31□□□□□ -2.46
SCN1A-208ENST00000625916 MT4P47944 62 aa-0.31□□□□□ -2.46
SCN1A-208ENST00000625916 SULT1A1P50225 295 aa-0.31□□□□□ -2.46
SCN1A-208ENST00000625916 DSCR4P56555 118 aaPredicted RBP-0.31□□□□□ -2.46
SCN1A-208ENST00000625916 ROMO1P60602 79 aa-0.31□□□□□ -2.46
SCN1A-208ENST00000625916 OR2F1Q13607 317 aa-0.31□□□□□ -2.46
SCN1A-208ENST00000625916 Q6ZQY7 126 aa-0.31□□□□□ -2.46
SCN1A-208ENST00000625916 PRR15Q8IV56 129 aa-0.31□□□□□ -2.46
SCN1A-208ENST00000625916 PLAC4Q8WY50 150 aa-0.31□□□□□ -2.46
SCN1A-208ENST00000625916 PTH2Q96A98 100 aa-0.31□□□□□ -2.46
SCN1A-208ENST00000625916 PBOV1Q9GZY1 135 aa-0.31□□□□□ -2.46
SCN1A-208ENST00000625916 HSPB8Q9UJY1 196 aa-0.31□□□□□ -2.46
SCN1A-208ENST00000625916 DNHD1Q96M86 4753 aa-0.31□□□□□ -2.46
SCN1A-208ENST00000625916 DOCK5Q9H7D0 1870 aa-0.31□□□□□ -2.46
SCN1A-208ENST00000625916 DSPP15924 2871 aaKnown RBP-0.31□□□□□ -2.46
SCN1A-208ENST00000625916 ROBO3Q96MS0 1386 aa-0.32□□□□□ -2.46
SCN1A-208ENST00000625916 STARD9Q9P2P6 4700 aa-0.32□□□□□ -2.46
SCN1A-208ENST00000625916 ARHGEF11O15085 1522 aa-0.32□□□□□ -2.46
SCN1A-208ENST00000625916 BIRC6Q9NR09 4857 aa-0.32□□□□□ -2.46
SCN1A-208ENST00000625916 TRGV10A0A0A0MS01 117 aa-0.32□□□□□ -2.46
SCN1A-208ENST00000625916 FAM236DA0A1B0GTK5 79 aa-0.32□□□□□ -2.46
SCN1A-208ENST00000625916 E7EUB6 86 aa-0.32□□□□□ -2.46
SCN1A-208ENST00000625916 CHP2O43745 196 aa-0.32□□□□□ -2.46
SCN1A-208ENST00000625916 CD14P08571 375 aa-0.32□□□□□ -2.46
SCN1A-208ENST00000625916 SMIM17P0DL12 118 aa-0.32□□□□□ -2.46
SCN1A-208ENST00000625916 FAM236CP0DP71 79 aa-0.32□□□□□ -2.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms