RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 SLC17A3O00476 420 aa11.29□□□□□ -0.6
CIITA-213ENST00000618327 SPRNQ5BIV9 151 aa11.29□□□□□ -0.6
CIITA-213ENST00000618327 PVRIGQ6DKI7 326 aa11.29□□□□□ -0.6
CIITA-213ENST00000618327 VSIRQ9H7M9 311 aa11.29□□□□□ -0.6
CIITA-213ENST00000618327 IL36BQ9NZH7 164 aa11.29□□□□□ -0.6
CIITA-213ENST00000618327 PHLDA3Q9Y5J5 127 aa11.29□□□□□ -0.6
CIITA-213ENST00000618327 GGTLC1Q9BX51 225 aa11.29□□□□□ -0.6
CIITA-213ENST00000618327 ZNF124Q15973 351 aa11.29□□□□□ -0.6
CIITA-213ENST00000618327 ALKBH7Q9BT30 221 aaPredicted RBP11.29□□□□□ -0.6
CIITA-213ENST00000618327 PRSS22Q9GZN4 317 aa11.29□□□□□ -0.6
CIITA-213ENST00000618327 SDF2L1Q9HCN8 221 aa11.29□□□□□ -0.6
CIITA-213ENST00000618327 CEP295Q9C0D2 2601 aa11.29□□□□□ -0.6
CIITA-213ENST00000618327 IGHV3-66A0A0C4DH42 116 aa11.29□□□□□ -0.6
CIITA-213ENST00000618327 MMP23AO75900 390 aa11.29□□□□□ -0.6
CIITA-213ENST00000618327 ST6GALNAC6Q969X2 333 aa11.29□□□□□ -0.6
CIITA-213ENST00000618327 NOTCH2Q04721 2471 aa11.28□□□□□ -0.6
CIITA-213ENST00000618327 SNAI2O43623 268 aa11.28□□□□□ -0.6
CIITA-213ENST00000618327 SAA4P35542 130 aa11.28□□□□□ -0.6
CIITA-213ENST00000618327 GUSBP1Q15486 140 aa11.28□□□□□ -0.6
CIITA-213ENST00000618327 RNF125Q96EQ8 232 aa11.28□□□□□ -0.6
CIITA-213ENST00000618327 BEX4Q9NWD9 120 aaPredicted RBP11.28□□□□□ -0.6
CIITA-213ENST00000618327 C15orf62A8K5M9 175 aa11.28□□□□□ -0.6
CIITA-213ENST00000618327 STAG3L3P0CL85 134 aa11.28□□□□□ -0.6
CIITA-213ENST00000618327 LINC00527Q9UJ94 153 aa11.28□□□□□ -0.6
CIITA-213ENST00000618327 MED12LQ86YW9 2145 aa11.28□□□□□ -0.6
CIITA-213ENST00000618327 ZNF134P52741 427 aa11.28□□□□□ -0.6
CIITA-213ENST00000618327 CCL20P78556 96 aa11.28□□□□□ -0.6
CIITA-213ENST00000618327 CIRBPQ14011 172 aaKnown RBP11.28□□□□□ -0.6
CIITA-213ENST00000618327 ZNF418Q8TF45 676 aaPredicted RBP11.28□□□□□ -0.6
CIITA-213ENST00000618327 MBD3L1Q8WWY6 194 aa11.28□□□□□ -0.6
CIITA-213ENST00000618327 SCO2A0A1W2PP80 73 aa11.27□□□□□ -0.6
CIITA-213ENST00000618327 LHBP01229 141 aa11.27□□□□□ -0.6
CIITA-213ENST00000618327 SPCS1Q9Y6A9 102 aa11.27□□□□□ -0.6
CIITA-213ENST00000618327 H3BUX3 64 aa11.27□□□□□ -0.61
CIITA-213ENST00000618327 CX3CL1P78423 397 aa11.27□□□□□ -0.61
CIITA-213ENST00000618327 IGKV1-39P01597 117 aa11.27□□□□□ -0.61
CIITA-213ENST00000618327 IGKV1D-39P04432 117 aa11.27□□□□□ -0.61
CIITA-213ENST00000618327 SRSF3P84103 164 aaKnown RBP11.27□□□□□ -0.61
CIITA-213ENST00000618327 FAM19A2Q8N3H0 131 aa11.27□□□□□ -0.61
CIITA-213ENST00000618327 TMEM160Q9NX00 188 aa11.27□□□□□ -0.61
CIITA-213ENST00000618327 ZNF833PQ6ZTB9 187 aa11.27□□□□□ -0.61
CIITA-213ENST00000618327 C18orf15Q96N68 181 aa11.27□□□□□ -0.61
CIITA-213ENST00000618327 MRPL16Q9NX20 251 aaKnown RBP11.27□□□□□ -0.61
CIITA-213ENST00000618327 TRBV20OR9-2A0A075B6H5 130 aa11.26□□□□□ -0.61
CIITA-213ENST00000618327 DMRTC2Q8IXT2 367 aaPredicted RBP11.26□□□□□ -0.61
CIITA-213ENST00000618327 LINC00311Q8N616 119 aa11.26□□□□□ -0.61
CIITA-213ENST00000618327 TRAV41A0A0B4J266 112 aa11.26□□□□□ -0.61
CIITA-213ENST00000618327 UBE2E1P51965 193 aa11.26□□□□□ -0.61
CIITA-213ENST00000618327 HIST1H1AQ02539 215 aaPredicted RBP11.26□□□□□ -0.61
CIITA-213ENST00000618327 LINC01356Q8N9X3 169 aa11.26□□□□□ -0.61
CIITA-213ENST00000618327 RFNGQ9Y644 331 aa11.26□□□□□ -0.61
CIITA-213ENST00000618327 PEX7O00628 323 aa11.26□□□□□ -0.61
CIITA-213ENST00000618327 MSMBP08118 114 aa11.26□□□□□ -0.61
CIITA-213ENST00000618327 Q5PR19 223 aa11.26□□□□□ -0.61
CIITA-213ENST00000618327 LHFPL4Q7Z7J7 247 aa11.26□□□□□ -0.61
CIITA-213ENST00000618327 OR4X2Q8NGF9 303 aa11.26□□□□□ -0.61
CIITA-213ENST00000618327 OR5AN1Q8NGI8 311 aa11.26□□□□□ -0.61
CIITA-213ENST00000618327 NDUFS7O75251 213 aa11.26□□□□□ -0.61
CIITA-213ENST00000618327 DERL1Q9BUN8 251 aa11.26□□□□□ -0.61
CIITA-213ENST00000618327 HIST1H2BKO60814 126 aa11.25□□□□□ -0.61
CIITA-213ENST00000618327 HIST1H2BJP06899 126 aa11.25□□□□□ -0.61
CIITA-213ENST00000618327 HIST1H2BOP23527 126 aa11.25□□□□□ -0.61
CIITA-213ENST00000618327 HIST1H2BBP33778 126 aa11.25□□□□□ -0.61
CIITA-213ENST00000618327 HIST1H2BDP58876 126 aa11.25□□□□□ -0.61
CIITA-213ENST00000618327 HIST1H2BCP62807 126 aa11.25□□□□□ -0.61
CIITA-213ENST00000618327 HIST2H2BEQ16778 126 aa11.25□□□□□ -0.61
CIITA-213ENST00000618327 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.25□□□□□ -0.61
CIITA-213ENST00000618327 RPP25LQ8N5L8 163 aaKnown RBP11.25□□□□□ -0.61
CIITA-213ENST00000618327 SYT8Q8NBV8 401 aa11.25□□□□□ -0.61
CIITA-213ENST00000618327 HIST1H2BHQ93079 126 aa11.25□□□□□ -0.61
CIITA-213ENST00000618327 MGST2Q99735 147 aa11.25□□□□□ -0.61
CIITA-213ENST00000618327 HIST1H2BNQ99877 126 aa11.25□□□□□ -0.61
CIITA-213ENST00000618327 HIST1H2BMQ99879 126 aa11.25□□□□□ -0.61
CIITA-213ENST00000618327 NRN1Q9NPD7 142 aa11.25□□□□□ -0.61
CIITA-213ENST00000618327 SERF1AO75920 110 aa11.25□□□□□ -0.61
CIITA-213ENST00000618327 KLF17Q5JT82 389 aaPredicted RBP11.25□□□□□ -0.61
CIITA-213ENST00000618327 KIR2DL4Q99706 377 aa11.25□□□□□ -0.61
CIITA-213ENST00000618327 CTSZQ9UBR2 303 aa11.25□□□□□ -0.61
CIITA-213ENST00000618327 DOCK11Q5JSL3 2073 aa11.25□□□□□ -0.61
CIITA-213ENST00000618327 IGHV2-70DA0A0C4DH43 119 aa11.24□□□□□ -0.61
CIITA-213ENST00000618327 UBE2CO00762 179 aa11.24□□□□□ -0.61
CIITA-213ENST00000618327 DNAL4O96015 105 aa11.24□□□□□ -0.61
CIITA-213ENST00000618327 PRB1P04280 392 aa11.24□□□□□ -0.61
CIITA-213ENST00000618327 PYYP10082 97 aa11.24□□□□□ -0.61
CIITA-213ENST00000618327 RNASE2P10153 161 aaKnown RBP11.24□□□□□ -0.61
CIITA-213ENST00000618327 VDAC2P45880 294 aaPredicted RBP11.24□□□□□ -0.61
CIITA-213ENST00000618327 PAPPA-AS1Q5QFB9 102 aa11.24□□□□□ -0.61
CIITA-213ENST00000618327 TSPAN13O95857 204 aa11.24□□□□□ -0.61
CIITA-213ENST00000618327 RPL23P62829 140 aaKnown RBP11.24□□□□□ -0.61
CIITA-213ENST00000618327 PSMG4Q5JS54 123 aa11.24□□□□□ -0.61
CIITA-213ENST00000618327 SAPCD1Q5SSQ6 148 aa11.24□□□□□ -0.61
CIITA-213ENST00000618327 CYYR1Q96J86 154 aa11.24□□□□□ -0.61
CIITA-213ENST00000618327 Q9H3A6 140 aa11.24□□□□□ -0.61
CIITA-213ENST00000618327 TMEM14BQ9NUH8 114 aa11.24□□□□□ -0.61
CIITA-213ENST00000618327 RNF223E7ERA6 249 aa11.24□□□□□ -0.61
CIITA-213ENST00000618327 APOHP02749 345 aaPredicted RBP11.24□□□□□ -0.61
CIITA-213ENST00000618327 C15orf32Q32M92 178 aa11.24□□□□□ -0.61
CIITA-213ENST00000618327 C10orf126Q8N4M7 172 aa11.24□□□□□ -0.61
CIITA-213ENST00000618327 MEGF9Q9H1U4 602 aa11.24□□□□□ -0.61
CIITA-213ENST00000618327 TRAV9-1A0A075B6T8 112 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms