RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 SCGB2A1O75556 95 aa10.2□□□□□ -0.78
LIG1-221ENST00000613670 CRYABP02511 175 aaKnown RBP10.2□□□□□ -0.78
LIG1-221ENST00000613670 IL4P05112 153 aa10.2□□□□□ -0.78
LIG1-221ENST00000613670 ZNF883P0CG24 379 aa10.2□□□□□ -0.78
LIG1-221ENST00000613670 MSMPQ1L6U9 139 aa10.2□□□□□ -0.78
LIG1-221ENST00000613670 FNDC4Q9H6D8 234 aaPredicted RBP10.2□□□□□ -0.78
LIG1-221ENST00000613670 ZNF474Q6S9Z5 364 aaPredicted RBP10.2□□□□□ -0.78
LIG1-221ENST00000613670 LINC00173Q6ZV60 143 aa10.2□□□□□ -0.78
LIG1-221ENST00000613670 FRYLO94915 3013 aa10.2□□□□□ -0.78
LIG1-221ENST00000613670 TECTAO75443 2155 aa10.2□□□□□ -0.78
LIG1-221ENST00000613670 IGHV1-69-2A0A0G2JMI3 117 aa10.2□□□□□ -0.78
LIG1-221ENST00000613670 OR2T8A6NH00 312 aa10.2□□□□□ -0.78
LIG1-221ENST00000613670 FTH1P19P0C7X4 201 aa10.2□□□□□ -0.78
LIG1-221ENST00000613670 PSG1P11464 419 aa10.2□□□□□ -0.78
LIG1-221ENST00000613670 CKS2P33552 79 aa10.2□□□□□ -0.78
LIG1-221ENST00000613670 TWIST1Q15672 202 aa10.2□□□□□ -0.78
LIG1-221ENST00000613670 TMEM200BQ69YZ2 307 aa10.2□□□□□ -0.78
LIG1-221ENST00000613670 GTF2H5Q6ZYL4 71 aa10.2□□□□□ -0.78
LIG1-221ENST00000613670 RNASE8Q8TDE3 154 aaKnown RBP10.2□□□□□ -0.78
LIG1-221ENST00000613670 TPSG1Q9NRR2 321 aa10.2□□□□□ -0.78
LIG1-221ENST00000613670 MRPS16Q9Y3D3 137 aaKnown RBP10.2□□□□□ -0.78
LIG1-221ENST00000613670 TMEM265A0A087WTH1 108 aa10.19□□□□□ -0.78
LIG1-221ENST00000613670 TMEM189A5PLL7 270 aa10.19□□□□□ -0.78
LIG1-221ENST00000613670 ZNF785A8K8V0 405 aa10.19□□□□□ -0.78
LIG1-221ENST00000613670 PNKDQ8N490 385 aa10.19□□□□□ -0.78
LIG1-221ENST00000613670 ZNF503Q96F45 646 aa10.19□□□□□ -0.78
LIG1-221ENST00000613670 OR2J3O76001 311 aa10.19□□□□□ -0.78
LIG1-221ENST00000613670 TCRAP04437 139 aa10.19□□□□□ -0.78
LIG1-221ENST00000613670 GPR183P32249 361 aa10.19□□□□□ -0.78
LIG1-221ENST00000613670 ZNF788Q6ZQV5 615 aa10.19□□□□□ -0.78
LIG1-221ENST00000613670 FMC1Q96HJ9 113 aa10.19□□□□□ -0.78
LIG1-221ENST00000613670 THYN1Q9P016 225 aa10.19□□□□□ -0.78
LIG1-221ENST00000613670 A6NDN8 102 aa10.19□□□□□ -0.78
LIG1-221ENST00000613670 LYNX1G3V0Z9 82 aa10.18□□□□□ -0.78
LIG1-221ENST00000613670 LYNX1P0DP58 116 aa10.18□□□□□ -0.78
LIG1-221ENST00000613670 LGALS7P47929 136 aa10.18□□□□□ -0.78
LIG1-221ENST00000613670 RELQ04864 619 aaPredicted RBP10.18□□□□□ -0.78
LIG1-221ENST00000613670 DDB2Q92466 427 aa10.18□□□□□ -0.78
LIG1-221ENST00000613670 NDFIP1Q9BT67 221 aa10.18□□□□□ -0.78
LIG1-221ENST00000613670 ST20Q9HBF5 79 aa10.18□□□□□ -0.78
LIG1-221ENST00000613670 DYSFO75923 2080 aa10.18□□□□□ -0.78
LIG1-221ENST00000613670 A0A1W2PPI3 338 aa10.18□□□□□ -0.78
LIG1-221ENST00000613670 C17orf100A8MU93 164 aa10.18□□□□□ -0.78
LIG1-221ENST00000613670 IGHV3-23P01764 117 aa10.18□□□□□ -0.78
LIG1-221ENST00000613670 GCSHP23434 173 aa10.18□□□□□ -0.78
LIG1-221ENST00000613670 GUCD1Q96NT3 240 aa10.18□□□□□ -0.78
LIG1-221ENST00000613670 NDUFA4L2Q9NRX3 87 aa10.18□□□□□ -0.78
LIG1-221ENST00000613670 COL4A2P08572 1712 aa10.18□□□□□ -0.78
LIG1-221ENST00000613670 PRSS46E5RG02 174 aa10.17□□□□□ -0.78
LIG1-221ENST00000613670 E7EUB6 86 aa10.17□□□□□ -0.78
LIG1-221ENST00000613670 IGHG3P01860 377 aa10.17□□□□□ -0.78
LIG1-221ENST00000613670 ESDP10768 282 aa10.17□□□□□ -0.78
LIG1-221ENST00000613670 LYPD2Q6UXB3 125 aa10.17□□□□□ -0.78
LIG1-221ENST00000613670 ATP5L2Q7Z4Y8 100 aa10.17□□□□□ -0.78
LIG1-221ENST00000613670 FNDC10F2Z333 226 aa10.17□□□□□ -0.78
LIG1-221ENST00000613670 J3KRW8 73 aa10.17□□□□□ -0.78
LIG1-221ENST00000613670 BSPH1Q075Z2 132 aa10.17□□□□□ -0.78
LIG1-221ENST00000613670 TMEM167AQ8TBQ9 72 aa10.17□□□□□ -0.78
LIG1-221ENST00000613670 PEF1Q9UBV8 284 aaKnown RBP10.17□□□□□ -0.78
LIG1-221ENST00000613670 C7orf71A4D174 169 aa10.17□□□□□ -0.78
LIG1-221ENST00000613670 H3BUT2 72 aa10.17□□□□□ -0.78
LIG1-221ENST00000613670 M0R3E3 92 aa10.17□□□□□ -0.78
LIG1-221ENST00000613670 CEACAM8P31997 349 aaPredicted RBP10.17□□□□□ -0.78
LIG1-221ENST00000613670 RASL11AQ6T310 242 aa10.17□□□□□ -0.78
LIG1-221ENST00000613670 UFC1Q9Y3C8 167 aa10.17□□□□□ -0.78
LIG1-221ENST00000613670 CGB1A6NKQ9 187 aa10.16□□□□□ -0.78
LIG1-221ENST00000613670 CDX4O14627 284 aaPredicted RBP10.16□□□□□ -0.78
LIG1-221ENST00000613670 PAX1P15863 534 aa10.16□□□□□ -0.78
LIG1-221ENST00000613670 TEX45Q8NA69 505 aa10.16□□□□□ -0.78
LIG1-221ENST00000613670 PRELID3AQ96N28 172 aa10.16□□□□□ -0.78
LIG1-221ENST00000613670 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.16□□□□□ -0.781e-7■■■■□ 22.1
LIG1-221ENST00000613670 IGHV3OR16-13A0A075B7E8 117 aa10.16□□□□□ -0.78
LIG1-221ENST00000613670 IGHV2-26A0A0B4J1V2 119 aa10.16□□□□□ -0.78
LIG1-221ENST00000613670 IGHV3-74A0A0B4J1X5 117 aa10.16□□□□□ -0.78
LIG1-221ENST00000613670 IGHV1-24A0A0C4DH33 117 aa10.16□□□□□ -0.78
LIG1-221ENST00000613670 IGLV1-44P01699 117 aa10.16□□□□□ -0.78
LIG1-221ENST00000613670 FXYD5Q96DB9 178 aa10.16□□□□□ -0.78
LIG1-221ENST00000613670 NBEAQ8NFP9 2946 aa10.16□□□□□ -0.78
LIG1-221ENST00000613670 NOTCH3Q9UM47 2321 aa10.16□□□□□ -0.78
LIG1-221ENST00000613670 ARMS2P0C7Q2 107 aa10.16□□□□□ -0.78
LIG1-221ENST00000613670 CACNG7P62955 275 aa10.16□□□□□ -0.78
LIG1-221ENST00000613670 MEF2CQ06413 473 aaPredicted RBP10.16□□□□□ -0.78
LIG1-221ENST00000613670 KLF17Q5JT82 389 aaPredicted RBP10.16□□□□□ -0.78
LIG1-221ENST00000613670 CHCHD1Q96BP2 118 aaKnown RBP10.16□□□□□ -0.78
LIG1-221ENST00000613670 SPTBN5Q9NRC6 3674 aaKnown RBP10.16□□□□□ -0.78
LIG1-221ENST00000613670 CNTFRP26992 372 aa10.15□□□□□ -0.78
LIG1-221ENST00000613670 TMEM30BQ3MIR4 351 aa10.15□□□□□ -0.78
LIG1-221ENST00000613670 PATE2Q6UY27 113 aa10.15□□□□□ -0.78
LIG1-221ENST00000613670 FAM167A-AS1Q96KT0 104 aa10.15□□□□□ -0.78
LIG1-221ENST00000613670 MRPL36Q9P0J6 103 aaKnown RBP10.15□□□□□ -0.78
LIG1-221ENST00000613670 FRYQ5TBA9 3013 aa10.15□□□□□ -0.78
LIG1-221ENST00000613670 IGLV2-8P01709 118 aa10.15□□□□□ -0.78
LIG1-221ENST00000613670 ZC2HC1AQ96GY0 325 aa10.15□□□□□ -0.78
LIG1-221ENST00000613670 C1orf159Q96HA4 380 aa10.15□□□□□ -0.78
LIG1-221ENST00000613670 IGF2BP2-AS1Q96M15 143 aa10.15□□□□□ -0.78
LIG1-221ENST00000613670 TNRC6AQ8NDV7 1962 aaKnown RBP10.15□□□□□ -0.78
LIG1-221ENST00000613670 FAM90A27PA6NNH2 459 aa10.15□□□□□ -0.78
LIG1-221ENST00000613670 RIPPLY3P57055 190 aa10.15□□□□□ -0.78
LIG1-221ENST00000613670 SAPCD1Q5SSQ6 148 aa10.15□□□□□ -0.78
LIG1-221ENST00000613670 PET117Q6UWS5 81 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms