RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 TRIQKQ629K1 86 aa9□□□□□ -0.97
TRIM28-212ENST00000597995 NDUFAF3Q9BU61 184 aa9□□□□□ -0.97
TRIM28-212ENST00000597995 SEPSECSQ9HD40 501 aaKnown RBP9□□□□□ -0.97
TRIM28-212ENST00000597995 CLEC5AQ9NY25 188 aa9□□□□□ -0.97
TRIM28-212ENST00000597995 MUC4Q99102 2169 aa8.99□□□□□ -0.97
TRIM28-212ENST00000597995 PRSS29PA6NIE9 313 aa8.99□□□□□ -0.97
TRIM28-212ENST00000597995 WRBO00258 174 aa8.99□□□□□ -0.97
TRIM28-212ENST00000597995 PLA2G10O15496 165 aa8.99□□□□□ -0.97
TRIM28-212ENST00000597995 OR4E1P0C645 316 aa8.99□□□□□ -0.97
TRIM28-212ENST00000597995 ANXA7P20073 488 aaKnown RBP8.99□□□□□ -0.97
TRIM28-212ENST00000597995 ID3Q02535 119 aa8.99□□□□□ -0.97
TRIM28-212ENST00000597995 DHRS2Q13268 280 aa8.99□□□□□ -0.97
TRIM28-212ENST00000597995 GSG1LQ6UXU4 331 aa8.99□□□□□ -0.97
TRIM28-212ENST00000597995 RNF125Q96EQ8 232 aa8.99□□□□□ -0.97
TRIM28-212ENST00000597995 SLC35E1Q96K37 410 aa8.99□□□□□ -0.97
TRIM28-212ENST00000597995 CELA1Q9UNI1 258 aa8.99□□□□□ -0.97
TRIM28-212ENST00000597995 RYR1P21817 5038 aa8.99□□□□□ -0.97
TRIM28-212ENST00000597995 ZFP92A6NM28 416 aa8.98□□□□□ -0.97
TRIM28-212ENST00000597995 RTL8CO15255 209 aa8.98□□□□□ -0.97
TRIM28-212ENST00000597995 MED6O75586 246 aa8.98□□□□□ -0.97
TRIM28-212ENST00000597995 RAB11AP62491 216 aa8.98□□□□□ -0.97
TRIM28-212ENST00000597995 OR2F1Q13607 317 aa8.98□□□□□ -0.97
TRIM28-212ENST00000597995 LGALS9BQ3B8N2 356 aa8.98□□□□□ -0.97
TRIM28-212ENST00000597995 PSMG4Q5JS54 123 aa8.98□□□□□ -0.97
TRIM28-212ENST00000597995 SIGLEC15Q6ZMC9 328 aa8.98□□□□□ -0.97
TRIM28-212ENST00000597995 THAP8Q8NA92 274 aa8.98□□□□□ -0.97
TRIM28-212ENST00000597995 OR4D5Q8NGN0 318 aa8.98□□□□□ -0.97
TRIM28-212ENST00000597995 TRGV9Q99603 122 aa8.98□□□□□ -0.97
TRIM28-212ENST00000597995 PBDC1Q9BVG4 233 aa8.98□□□□□ -0.97
TRIM28-212ENST00000597995 PAIP2BQ9ULR5 123 aaKnown RBP8.98□□□□□ -0.97
TRIM28-212ENST00000597995 H3BP45 60 aa8.97□□□□□ -0.97
TRIM28-212ENST00000597995 SNRPD3P62318 126 aaKnown RBP8.97□□□□□ -0.97
TRIM28-212ENST00000597995 POLR2GP62487 172 aaKnown RBP eCLIP8.97□□□□□ -0.97
TRIM28-212ENST00000597995 SPANXN5Q5MJ07 72 aa8.97□□□□□ -0.97
TRIM28-212ENST00000597995 TMEM182Q6ZP80 229 aaPredicted RBP8.97□□□□□ -0.97
TRIM28-212ENST00000597995 ZNF767PQ75MW2 155 aa8.97□□□□□ -0.97
TRIM28-212ENST00000597995 FAM210BQ96KR6 192 aa8.97□□□□□ -0.97
TRIM28-212ENST00000597995 NEU1Q99519 415 aa8.97□□□□□ -0.97
TRIM28-212ENST00000597995 C7orf50Q9BRJ6 194 aaKnown RBP8.97□□□□□ -0.97
TRIM28-212ENST00000597995 NRN1Q9NPD7 142 aa8.97□□□□□ -0.97
TRIM28-212ENST00000597995 TMEM189A5PLL7 270 aa8.96□□□□□ -0.98
TRIM28-212ENST00000597995 SMIM9A6NGZ8 99 aa8.96□□□□□ -0.98
TRIM28-212ENST00000597995 PMS2P5A8MQ11 134 aa8.96□□□□□ -0.98
TRIM28-212ENST00000597995 H3BMM0 161 aa8.96□□□□□ -0.98
TRIM28-212ENST00000597995 SPART-AS1P0CW21 52 aa8.96□□□□□ -0.98
TRIM28-212ENST00000597995 PAX9P55771 341 aa8.96□□□□□ -0.98
TRIM28-212ENST00000597995 DEFB1P60022 68 aa8.96□□□□□ -0.98
TRIM28-212ENST00000597995 LYZP61626 148 aa8.96□□□□□ -0.98
TRIM28-212ENST00000597995 OR8G2PQ6IF36 304 aa8.96□□□□□ -0.98
TRIM28-212ENST00000597995 ZNF705AQ6ZN79 300 aaPredicted RBP8.96□□□□□ -0.98
TRIM28-212ENST00000597995 C17orf77Q96MU5 243 aa8.96□□□□□ -0.98
TRIM28-212ENST00000597995 CIB3Q96Q77 187 aaPredicted RBP8.96□□□□□ -0.98
TRIM28-212ENST00000597995 WDR12Q9GZL7 423 aaKnown RBP8.96□□□□□ -0.98
TRIM28-212ENST00000597995 NDUFA13Q9P0J0 144 aa8.96□□□□□ -0.98
TRIM28-212ENST00000597995 XCL2Q9UBD3 114 aa8.96□□□□□ -0.98
TRIM28-212ENST00000597995 DYNC1H1Q14204 4646 aaKnown RBP8.96□□□□□ -0.98
TRIM28-212ENST00000597995 CENPXA8MT69 81 aa8.95□□□□□ -0.98
TRIM28-212ENST00000597995 SNRPGP15A8MWD9 76 aa8.95□□□□□ -0.98
TRIM28-212ENST00000597995 M0R2N4 97 aa8.95□□□□□ -0.98
TRIM28-212ENST00000597995 SOCS3O14543 225 aa8.95□□□□□ -0.98
TRIM28-212ENST00000597995 CCNKO75909 580 aa8.95□□□□□ -0.98
TRIM28-212ENST00000597995 GATA2P23769 480 aaPredicted RBP8.95□□□□□ -0.98
TRIM28-212ENST00000597995 COQ8AQ8NI60 647 aa8.95□□□□□ -0.98
TRIM28-212ENST00000597995 SCRT1Q9BWW7 348 aa8.95□□□□□ -0.98
TRIM28-212ENST00000597995 DNAH11Q96DT5 4516 aa8.95□□□□□ -0.98
TRIM28-212ENST00000597995 ZNF705FA8MVS1 300 aaPredicted RBP8.94□□□□□ -0.98
TRIM28-212ENST00000597995 IFNA21P01568 189 aa8.94□□□□□ -0.98
TRIM28-212ENST00000597995 ZNF705DP0CH99 300 aaPredicted RBP8.94□□□□□ -0.98
TRIM28-212ENST00000597995 ZNF705BP0CI00 300 aaPredicted RBP8.94□□□□□ -0.98
TRIM28-212ENST00000597995 HLA-DRB4P13762 266 aa8.94□□□□□ -0.98
TRIM28-212ENST00000597995 NUP62P37198 522 aaPredicted RBP8.94□□□□□ -0.98
TRIM28-212ENST00000597995 NKX2-1P43699 371 aaPredicted RBP8.94□□□□□ -0.98
TRIM28-212ENST00000597995 RPP30P78346 268 aaKnown RBP8.94□□□□□ -0.98
TRIM28-212ENST00000597995 C4orf46Q504U0 113 aa8.94□□□□□ -0.98
TRIM28-212ENST00000597995 GDF5OSQ5U4N7 250 aa8.94□□□□□ -0.98
TRIM28-212ENST00000597995 ACOT7LQ6ZUV0 252 aa8.94□□□□□ -0.98
TRIM28-212ENST00000597995 MITD1Q8WV92 249 aa8.94□□□□□ -0.98
TRIM28-212ENST00000597995 SMIM8Q96KF7 97 aa8.94□□□□□ -0.98
TRIM28-212ENST00000597995 C20orf85Q9H1P6 137 aa8.94□□□□□ -0.98
TRIM28-212ENST00000597995 PSENENQ9NZ42 101 aa8.94□□□□□ -0.98
TRIM28-212ENST00000597995 PFDN2Q9UHV9 154 aa8.94□□□□□ -0.98
TRIM28-212ENST00000597995 STRAPQ9Y3F4 350 aaKnown RBP8.94□□□□□ -0.98
TRIM28-212ENST00000597995 HLA-DRB4X5D2U9 266 aa8.94□□□□□ -0.98
TRIM28-212ENST00000597995 TEX48A0A1B0GUV7 120 aa8.93□□□□□ -0.98
TRIM28-212ENST00000597995 LYRM1O43325 122 aa8.93□□□□□ -0.98
TRIM28-212ENST00000597995 SSSCA1O60232 199 aa8.93□□□□□ -0.98
TRIM28-212ENST00000597995 C1orf194Q5T5A4 169 aa8.93□□□□□ -0.98
TRIM28-212ENST00000597995 TMEM14EPQ6UXP3 125 aa8.93□□□□□ -0.98
TRIM28-212ENST00000597995 Q6ZR54 194 aa8.93□□□□□ -0.98
TRIM28-212ENST00000597995 ZBTB8BQ8NAP8 495 aaPredicted RBP8.93□□□□□ -0.98
TRIM28-212ENST00000597995 CLUHP3Q96NS8 147 aa8.93□□□□□ -0.98
TRIM28-212ENST00000597995 RCL1Q9Y2P8 373 aaKnown RBP8.93□□□□□ -0.98
TRIM28-212ENST00000597995 PKD1P98161 4303 aa8.92□□□□□ -0.98
TRIM28-212ENST00000597995 TCRBP04435 133 aa8.92□□□□□ -0.98
TRIM28-212ENST00000597995 FABP1P07148 127 aa8.92□□□□□ -0.98
TRIM28-212ENST00000597995 IAH1Q2TAA2 248 aaPredicted RBP8.92□□□□□ -0.98
TRIM28-212ENST00000597995 RNF212Q495C1 297 aa8.92□□□□□ -0.98
TRIM28-212ENST00000597995 SOHLH1Q5JUK2 328 aa8.92□□□□□ -0.98
TRIM28-212ENST00000597995 TMEM144Q7Z5S9 345 aa8.92□□□□□ -0.98
TRIM28-212ENST00000597995 SLC25A32Q9H2D1 315 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms