RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 C18orf32Q8TCD1 76 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 TSKUQ8WUA8 353 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 RCHY1Q96PM5 261 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 HSD17B10Q99714 261 aaKnown RBP3.34□□□□□ -1.87
LIG3-211ENST00000588713 MGST2Q99735 147 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 PMCHL2Q9BQD1 86 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 FAM103A1Q9BTL3 118 aaKnown RBP3.34□□□□□ -1.87
LIG3-211ENST00000588713 CHRDL1Q9BU40 450 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 SRXN1Q9BYN0 137 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 CSTL1Q9H114 145 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 OR2D2Q9H210 308 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 CST9LQ9H4G1 147 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 PLSCR4Q9NRQ2 329 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 IL36RNQ9UBH0 155 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 PEF1Q9UBV8 284 aaKnown RBP3.34□□□□□ -1.87
LIG3-211ENST00000588713 PPP1R3CQ9UQK1 317 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 POLDIP2Q9Y2S7 368 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 RBM7Q9Y580 266 aaKnown RBP3.34□□□□□ -1.87
LIG3-211ENST00000588713 YTHDF2Q9Y5A9 579 aaKnown RBP3.34□□□□□ -1.87
LIG3-211ENST00000588713 SOX21Q9Y651 276 aaPredicted RBP3.34□□□□□ -1.87
LIG3-211ENST00000588713 TET2Q6N021 2002 aaPredicted RBP3.33□□□□□ -1.88
LIG3-211ENST00000588713 IGHV3OR16-10A0A075B7F0 116 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 IGKV3D-15A0A087WSY6 115 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 A0A0J9YW62 118 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 OOEPA6NGQ2 149 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 ANKRD30BLA7E2S9 258 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 J3QLI3 93 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 M0R1B8 84 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 M0R1X1 148 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 SLC17A3O00476 420 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 RRHO14718 337 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 SH2D1BO14796 132 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 TAX1BP3O14907 124 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 CRXO43186 299 aaPredicted RBP3.33□□□□□ -1.88
LIG3-211ENST00000588713 SYNGR1O43759 233 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 CIDEAO60543 219 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 FSHBP01225 129 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 APCSP02743 223 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 SCGB1A1P11684 91 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 TMEM11P17152 192 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 APOBEC3AP31941 199 aaPredicted RBP3.33□□□□□ -1.88
LIG3-211ENST00000588713 G6PCP35575 357 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 KIR2DS2P43631 304 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 GPR6P46095 362 aaPredicted RBP3.33□□□□□ -1.88
LIG3-211ENST00000588713 GFRA1P56159 465 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 B3GALT5-AS1P59052 145 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 HIST1H1AQ02539 215 aaPredicted RBP3.33□□□□□ -1.88
LIG3-211ENST00000588713 RAB31Q13636 194 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 VAMP3Q15836 100 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 GABRA6Q16445 453 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 RNF151Q2KHN1 245 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 TIGITQ495A1 244 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 PRR27Q6MZM9 219 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 FAM71F2Q6NXP2 309 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 Q6P435 159 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 TMEM108Q6UXF1 575 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 PQLC2Q6ZP29 291 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 BHLHA15Q7RTS1 189 aaPredicted RBP3.33□□□□□ -1.88
LIG3-211ENST00000588713 H2BFWTQ7Z2G1 175 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 OCC1Q8TAD7 63 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 SLC25A40Q8TBP6 338 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 IL1F10Q8WWZ1 152 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 TMEM190Q8WZ59 177 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 CHCHD1Q96BP2 118 aaKnown RBP3.33□□□□□ -1.88
LIG3-211ENST00000588713 C5orf30Q96GV9 206 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 IGF2BP2-AS1Q96M15 143 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 OR2V2Q96R30 315 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 TMEM70Q9BUB7 260 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 RTL8AQ9BWD3 113 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 MRPL32Q9BYC8 188 aaKnown RBP3.33□□□□□ -1.88
LIG3-211ENST00000588713 PRRG4Q9BZD6 226 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 WNT10AQ9GZT5 417 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 RAB1BQ9H0U4 201 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 MS4A6AQ9H2W1 248 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 IL19Q9UHD0 177 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 TRAPPC2LQ9UL33 140 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 LSM4Q9Y4Z0 139 aaKnown RBP3.33□□□□□ -1.88
LIG3-211ENST00000588713 HUWE1Q7Z6Z7 4374 aaKnown RBP3.33□□□□□ -1.88
LIG3-211ENST00000588713 ALMS1Q8TCU4 4167 aa3.33□□□□□ -1.88
LIG3-211ENST00000588713 A0A1W2PR80 420 aa3.32□□□□□ -1.88
LIG3-211ENST00000588713 A0A1W2PRE2 83 aa3.32□□□□□ -1.88
LIG3-211ENST00000588713 CBY3A6NI87 242 aa3.32□□□□□ -1.88
LIG3-211ENST00000588713 TMEM238C9JI98 176 aa3.32□□□□□ -1.88
LIG3-211ENST00000588713 M0R2Z0 102 aa3.32□□□□□ -1.88
LIG3-211ENST00000588713 ZIC3O60481 467 aa3.32□□□□□ -1.88
LIG3-211ENST00000588713 LYZL6O75951 148 aa3.32□□□□□ -1.88
LIG3-211ENST00000588713 OR2H2O95918 312 aa3.32□□□□□ -1.88
LIG3-211ENST00000588713 HAND1O96004 215 aa3.32□□□□□ -1.88
LIG3-211ENST00000588713 MED14OSP0DP75 135 aa3.32□□□□□ -1.88
LIG3-211ENST00000588713 DEFA4P12838 97 aa3.32□□□□□ -1.88
LIG3-211ENST00000588713 CD40P25942 277 aa3.32□□□□□ -1.88
LIG3-211ENST00000588713 CRYBB3P26998 211 aa3.32□□□□□ -1.88
LIG3-211ENST00000588713 HOXD3P31249 432 aaPredicted RBP3.32□□□□□ -1.88
LIG3-211ENST00000588713 DUTP33316 252 aaKnown RBP3.32□□□□□ -1.88
LIG3-211ENST00000588713 VDAC2P45880 294 aaPredicted RBP3.32□□□□□ -1.88
LIG3-211ENST00000588713 PPOXP50336 477 aa3.32□□□□□ -1.88
LIG3-211ENST00000588713 EDDM3BP56851 147 aa3.32□□□□□ -1.88
LIG3-211ENST00000588713 CARD18P57730 90 aa3.32□□□□□ -1.88
LIG3-211ENST00000588713 TAS2R45P59539 299 aa3.32□□□□□ -1.88
LIG3-211ENST00000588713 ERVK11-1P61568 191 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms