RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 FGF7P21781 194 aa5.33□□□□□ -1.56
VPS53-217ENST00000575100 EFNA4P52798 201 aa5.33□□□□□ -1.56
VPS53-217ENST00000575100 HERPUD1Q15011 391 aa5.33□□□□□ -1.56
VPS53-217ENST00000575100 KLF17Q5JT82 389 aaPredicted RBP5.33□□□□□ -1.56
VPS53-217ENST00000575100 HSD17B13Q7Z5P4 300 aaPredicted RBP5.33□□□□□ -1.56
VPS53-217ENST00000575100 HOGA1Q86XE5 327 aa5.33□□□□□ -1.56
VPS53-217ENST00000575100 TCTE3Q8IZS6 198 aa5.33□□□□□ -1.56
VPS53-217ENST00000575100 TOMM5Q8N4H5 51 aa5.33□□□□□ -1.56
VPS53-217ENST00000575100 C11orf42Q8N5U0 333 aa5.33□□□□□ -1.56
VPS53-217ENST00000575100 MAPK1IP1LQ8NDC0 245 aa5.33□□□□□ -1.56
VPS53-217ENST00000575100 BEST4Q8NFU0 473 aa5.33□□□□□ -1.56
VPS53-217ENST00000575100 OR4C16Q8NGL9 310 aa5.33□□□□□ -1.56
VPS53-217ENST00000575100 HIST1H2BAQ96A08 127 aa5.33□□□□□ -1.56
VPS53-217ENST00000575100 FAM19A4Q96LR4 140 aa5.33□□□□□ -1.56
VPS53-217ENST00000575100 SIGMAR1Q99720 223 aa5.33□□□□□ -1.56
VPS53-217ENST00000575100 SIGLEC9Q9Y336 463 aa5.33□□□□□ -1.56
VPS53-217ENST00000575100 RFNGQ9Y644 331 aa5.33□□□□□ -1.56
VPS53-217ENST00000575100 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.33□□□□□ -1.56
VPS53-217ENST00000575100 U3KQ87 197 aa5.33□□□□□ -1.56
VPS53-217ENST00000575100 TRAV38-1A0A0B4J264 116 aa5.32□□□□□ -1.56
VPS53-217ENST00000575100 IGKV1-6A0A0C4DH72 117 aa5.32□□□□□ -1.56
VPS53-217ENST00000575100 SDCBPO00560 298 aaPredicted RBP5.32□□□□□ -1.56
VPS53-217ENST00000575100 LYRM1O43325 122 aa5.32□□□□□ -1.56
VPS53-217ENST00000575100 PMP2P02689 132 aa5.32□□□□□ -1.56
VPS53-217ENST00000575100 CSN2P05814 226 aa5.32□□□□□ -1.56
VPS53-217ENST00000575100 SCTP09683 121 aa5.32□□□□□ -1.56
VPS53-217ENST00000575100 S100A2P29034 98 aa5.32□□□□□ -1.56
VPS53-217ENST00000575100 TSPOP30536 169 aa5.32□□□□□ -1.56
VPS53-217ENST00000575100 RND2P52198 227 aa5.32□□□□□ -1.56
VPS53-217ENST00000575100 PRSS8Q16651 343 aa5.32□□□□□ -1.56
VPS53-217ENST00000575100 FAM74A1Q5RGS3 127 aa5.32□□□□□ -1.56
VPS53-217ENST00000575100 TCF23Q7RTU1 214 aa5.32□□□□□ -1.56
VPS53-217ENST00000575100 PDZD9Q8IXQ8 264 aa5.32□□□□□ -1.56
VPS53-217ENST00000575100 UBAC2Q8NBM4 344 aa5.32□□□□□ -1.56
VPS53-217ENST00000575100 OR13A1Q8NGR1 328 aa5.32□□□□□ -1.56
VPS53-217ENST00000575100 C15orf40Q8WUR7 153 aa5.32□□□□□ -1.56
VPS53-217ENST00000575100 KIR2DL4Q99706 377 aa5.32□□□□□ -1.56
VPS53-217ENST00000575100 THYN1Q9P016 225 aa5.32□□□□□ -1.56
VPS53-217ENST00000575100 OR1A1Q9P1Q5 309 aa5.32□□□□□ -1.56
VPS53-217ENST00000575100 ZNF736B4DX44 427 aaPredicted RBP5.31□□□□□ -1.56
VPS53-217ENST00000575100 MMP23AO75900 390 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 PFN2P35080 140 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 LINC00310P59036 64 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 LTC4SQ16873 150 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 LDLRAD2Q5SZI1 272 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 ZNF880Q6PDB4 577 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 Q8N3U1 123 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 TMEM86BQ8N661 226 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 OR4X1Q8NH49 305 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 SMIM8Q96KF7 97 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 BPESC1Q9GZL8 116 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 C20orf85Q9H1P6 137 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 PRO1933Q9H354 126 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 FBXL15Q9H469 300 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 ANXA10Q9UJ72 324 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 TMEM218A2RU14 115 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 E9PLD3 99 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 H7C1H1 209 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 CDS2O95674 445 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 MDH2P40926 338 aaKnown RBP5.31□□□□□ -1.56
VPS53-217ENST00000575100 INPP1P49441 399 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 EDDM3BP56851 147 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 TCTAP57738 103 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 DSCR9P59020 149 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 TAS2R19P59542 299 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 LOXL1Q08397 574 aaPredicted RBP5.31□□□□□ -1.56
VPS53-217ENST00000575100 KRTAP24-1Q3LI83 254 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 C1orf195Q5TG92 126 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 Q6ZN92 141 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 TMEM229BQ8NBD8 167 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 SYT8Q8NBV8 401 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 OR5AP2Q8NGF4 316 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 C9orf85Q96MD7 179 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 MARVELD1Q9BSK0 173 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 PARP12Q9H0J9 701 aaKnown RBP5.31□□□□□ -1.56
VPS53-217ENST00000575100 KCNIP1Q9NZI2 227 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 VAX2Q9UIW0 290 aa5.31□□□□□ -1.56
VPS53-217ENST00000575100 LSM5Q9Y4Y9 91 aaKnown RBP5.31□□□□□ -1.56
VPS53-217ENST00000575100 IGHV4-30-2A0A087WSY4 118 aa5.3□□□□□ -1.56
VPS53-217ENST00000575100 TRBV6-6A0A0A6YYG2 114 aa5.3□□□□□ -1.56
VPS53-217ENST00000575100 TMEM30CPA0ZSE6 113 aa5.3□□□□□ -1.56
VPS53-217ENST00000575100 ODAMA1E959 279 aa5.3□□□□□ -1.56
VPS53-217ENST00000575100 LINC01548A6NM66 108 aa5.3□□□□□ -1.56
VPS53-217ENST00000575100 C12orf77C9JDV5 145 aa5.3□□□□□ -1.56
VPS53-217ENST00000575100 AKAIN1P0CW23 69 aa5.3□□□□□ -1.56
VPS53-217ENST00000575100 IL2RGP31785 369 aa5.3□□□□□ -1.56
VPS53-217ENST00000575100 BRS3P32247 399 aa5.3□□□□□ -1.56
VPS53-217ENST00000575100 SSBP1Q04837 148 aaKnown RBP5.3□□□□□ -1.56
VPS53-217ENST00000575100 SMAGPQ0VAQ4 97 aa5.3□□□□□ -1.56
VPS53-217ENST00000575100 COL5A1-AS1Q5SY13 56 aa5.3□□□□□ -1.56
VPS53-217ENST00000575100 C10orf25Q5T742 122 aa5.3□□□□□ -1.56
VPS53-217ENST00000575100 AADACL3Q5VUY0 350 aa5.3□□□□□ -1.56
VPS53-217ENST00000575100 ZNF660Q6AZW8 331 aaPredicted RBP5.3□□□□□ -1.56
VPS53-217ENST00000575100 SLC35E4Q6ICL7 350 aa5.3□□□□□ -1.56
VPS53-217ENST00000575100 H1FOOQ8IZA3 346 aaPredicted RBP5.3□□□□□ -1.56
VPS53-217ENST00000575100 OR13C8Q8NGS7 320 aa5.3□□□□□ -1.56
VPS53-217ENST00000575100 OR1L1Q8NH94 360 aa5.3□□□□□ -1.56
VPS53-217ENST00000575100 MPLKIPQ8TAP9 179 aa5.3□□□□□ -1.56
VPS53-217ENST00000575100 TMEM230Q96A57 120 aa5.3□□□□□ -1.56
VPS53-217ENST00000575100 BTF3L4Q96K17 158 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms