RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 NEU1Q99519 415 aa10.7□□□□□ -0.7
CLN3-236ENST00000568558 C7orf50Q9BRJ6 194 aaKnown RBP10.7□□□□□ -0.7
CLN3-236ENST00000568558 NDUFAF3Q9BU61 184 aa10.7□□□□□ -0.7
CLN3-236ENST00000568558 PTTG2Q9NZH5 202 aa10.7□□□□□ -0.7
CLN3-236ENST00000568558 HSPB7Q9UBY9 170 aa10.7□□□□□ -0.7
CLN3-236ENST00000568558 U3KQ87 197 aa10.7□□□□□ -0.7
CLN3-236ENST00000568558 A0A1B0GVY2 172 aa10.69□□□□□ -0.7
CLN3-236ENST00000568558 C9orf170A2RU37 121 aa10.69□□□□□ -0.7
CLN3-236ENST00000568558 CENPXA8MT69 81 aa10.69□□□□□ -0.7
CLN3-236ENST00000568558 ZNF705FA8MVS1 300 aaPredicted RBP10.69□□□□□ -0.7
CLN3-236ENST00000568558 LYRM1O43325 122 aa10.69□□□□□ -0.7
CLN3-236ENST00000568558 ZNF705DP0CH99 300 aaPredicted RBP10.69□□□□□ -0.7
CLN3-236ENST00000568558 ZNF705BP0CI00 300 aaPredicted RBP10.69□□□□□ -0.7
CLN3-236ENST00000568558 NUP62P37198 522 aaPredicted RBP10.69□□□□□ -0.7
CLN3-236ENST00000568558 DEFB1P60022 68 aa10.69□□□□□ -0.7
CLN3-236ENST00000568558 OR8G2PQ6IF36 304 aa10.69□□□□□ -0.7
CLN3-236ENST00000568558 LINC00299Q6ZSB3 139 aa10.69□□□□□ -0.7
CLN3-236ENST00000568558 CCDC32Q9BV29 185 aa10.69□□□□□ -0.7
CLN3-236ENST00000568558 PCLOQ9Y6V0 5065 aa10.69□□□□□ -0.7
CLN3-236ENST00000568558 PITX3O75364 302 aa10.68□□□□□ -0.7
CLN3-236ENST00000568558 HOXB5P09067 269 aa10.68□□□□□ -0.7
CLN3-236ENST00000568558 UBE2MP61081 183 aaKnown RBP10.68□□□□□ -0.7
CLN3-236ENST00000568558 PBDC1Q9BVG4 233 aa10.68□□□□□ -0.7
CLN3-236ENST00000568558 WDR12Q9GZL7 423 aaKnown RBP10.68□□□□□ -0.7
CLN3-236ENST00000568558 RBKSQ9H477 322 aa10.68□□□□□ -0.7
CLN3-236ENST00000568558 SAV1Q9H4B6 383 aaPredicted RBP10.68□□□□□ -0.7
CLN3-236ENST00000568558 IGKV1D-37A0A075B6S9 117 aa10.67□□□□□ -0.7
CLN3-236ENST00000568558 DUXBA0A1W2PPF3 345 aa10.67□□□□□ -0.7
CLN3-236ENST00000568558 TMEM189A5PLL7 270 aa10.67□□□□□ -0.7
CLN3-236ENST00000568558 SMIM9A6NGZ8 99 aa10.67□□□□□ -0.7
CLN3-236ENST00000568558 ZFP92A6NM28 416 aa10.67□□□□□ -0.7
CLN3-236ENST00000568558 SOCS3O14543 225 aa10.67□□□□□ -0.7
CLN3-236ENST00000568558 ADAP1O75689 374 aa10.67□□□□□ -0.7
CLN3-236ENST00000568558 IGKV3-20P01619 116 aa10.67□□□□□ -0.7
CLN3-236ENST00000568558 OR4E1P0C645 316 aa10.67□□□□□ -0.7
CLN3-236ENST00000568558 SPART-AS1P0CW21 52 aa10.67□□□□□ -0.7
CLN3-236ENST00000568558 FXYD7P58549 80 aa10.67□□□□□ -0.7
CLN3-236ENST00000568558 ZNF90Q03938 601 aa10.67□□□□□ -0.7
CLN3-236ENST00000568558 GAMTQ14353 236 aa10.67□□□□□ -0.7
CLN3-236ENST00000568558 FOXI2Q6ZQN5 318 aa10.67□□□□□ -0.7
CLN3-236ENST00000568558 OR1S1Q8NH92 325 aa10.67□□□□□ -0.7
CLN3-236ENST00000568558 S100ZQ8WXG8 99 aa10.67□□□□□ -0.7
CLN3-236ENST00000568558 CLUHP3Q96NS8 147 aa10.67□□□□□ -0.7
CLN3-236ENST00000568558 C20orf85Q9H1P6 137 aa10.67□□□□□ -0.7
CLN3-236ENST00000568558 PFDN2Q9UHV9 154 aa10.67□□□□□ -0.7
CLN3-236ENST00000568558 NACAE9PAV3 2078 aa10.67□□□□□ -0.7
CLN3-236ENST00000568558 GPX4P36969 197 aaPredicted RBP10.66□□□□□ -0.7
CLN3-236ENST00000568558 ID1P41134 155 aa10.66□□□□□ -0.7
CLN3-236ENST00000568558 PSMB3P49720 205 aa10.66□□□□□ -0.7
CLN3-236ENST00000568558 EMP1P54849 157 aa10.66□□□□□ -0.7
CLN3-236ENST00000568558 ATP5IP56385 69 aaPredicted RBP10.66□□□□□ -0.7
CLN3-236ENST00000568558 GGNBP1Q5YKI7 109 aa10.66□□□□□ -0.7
CLN3-236ENST00000568558 ZNF709Q8N972 641 aa10.66□□□□□ -0.7
CLN3-236ENST00000568558 SLC35E1Q96K37 410 aa10.66□□□□□ -0.7
CLN3-236ENST00000568558 LINC00052Q96N35 136 aa10.66□□□□□ -0.7
CLN3-236ENST00000568558 BATF3Q9NR55 127 aa10.66□□□□□ -0.7
CLN3-236ENST00000568558 TMED3Q9Y3Q3 217 aa10.66□□□□□ -0.7
CLN3-236ENST00000568558 RFNGQ9Y644 331 aa10.66□□□□□ -0.7
CLN3-236ENST00000568558 TRAV6A0A075B6T7 132 aa10.65□□□□□ -0.7
CLN3-236ENST00000568558 IGHV3OR16-12A0A075B7B8 117 aa10.65□□□□□ -0.7
CLN3-236ENST00000568558 RTL8CO15255 209 aa10.65□□□□□ -0.7
CLN3-236ENST00000568558 TCRBP04435 133 aa10.65□□□□□ -0.7
CLN3-236ENST00000568558 LYZP61626 148 aa10.65□□□□□ -0.7
CLN3-236ENST00000568558 IFITM3Q01628 133 aa10.65□□□□□ -0.7
CLN3-236ENST00000568558 C4orf46Q504U0 113 aa10.65□□□□□ -0.7
CLN3-236ENST00000568558 C1orf194Q5T5A4 169 aa10.65□□□□□ -0.7
CLN3-236ENST00000568558 COQ8AQ8NI60 647 aa10.65□□□□□ -0.7
CLN3-236ENST00000568558 DKK2Q9UBU2 259 aa10.65□□□□□ -0.7
CLN3-236ENST00000568558 PRSS29PA6NIE9 313 aa10.64□□□□□ -0.71
CLN3-236ENST00000568558 M0R2N4 97 aa10.64□□□□□ -0.71
CLN3-236ENST00000568558 IAPPP10997 89 aa10.64□□□□□ -0.71
CLN3-236ENST00000568558 SLC25A6P12236 298 aa10.64□□□□□ -0.71
CLN3-236ENST00000568558 PAX9P55771 341 aa10.64□□□□□ -0.71
CLN3-236ENST00000568558 ZNF846Q147U1 533 aa10.64□□□□□ -0.71
CLN3-236ENST00000568558 LGALS9BQ3B8N2 356 aa10.64□□□□□ -0.71
CLN3-236ENST00000568558 SPATA31B1PQ5VZV4 182 aa10.64□□□□□ -0.71
CLN3-236ENST00000568558 GSG1LQ6UXU4 331 aa10.64□□□□□ -0.71
CLN3-236ENST00000568558 OR4B1Q8NGF8 309 aa10.64□□□□□ -0.71
CLN3-236ENST00000568558 MAGT1Q9H0U3 335 aa10.64□□□□□ -0.71
CLN3-236ENST00000568558 SLC35B3Q9H1N7 401 aa10.64□□□□□ -0.71
CLN3-236ENST00000568558 NUDT15Q9NV35 164 aa10.64□□□□□ -0.71
CLN3-236ENST00000568558 MUC4Q99102 2169 aa10.63□□□□□ -0.71
CLN3-236ENST00000568558 PIGBOS1A0A0B4J2F0 54 aa10.63□□□□□ -0.71
CLN3-236ENST00000568558 TEX48A0A1B0GUV7 120 aa10.63□□□□□ -0.71
CLN3-236ENST00000568558 SNRPGP15A8MWD9 76 aa10.63□□□□□ -0.71
CLN3-236ENST00000568558 ISLRO14498 428 aa10.63□□□□□ -0.71
CLN3-236ENST00000568558 UPK1BO75841 260 aa10.63□□□□□ -0.71
CLN3-236ENST00000568558 FABP1P07148 127 aa10.63□□□□□ -0.71
CLN3-236ENST00000568558 ASAH1Q13510 395 aa10.63□□□□□ -0.71
CLN3-236ENST00000568558 OR2F1Q13607 317 aa10.63□□□□□ -0.71
CLN3-236ENST00000568558 FAM222AQ5U5X8 452 aa10.63□□□□□ -0.71
CLN3-236ENST00000568558 FAM210BQ96KR6 192 aa10.63□□□□□ -0.71
CLN3-236ENST00000568558 TRGV9Q99603 122 aa10.63□□□□□ -0.71
CLN3-236ENST00000568558 SEC22CQ9BRL7 303 aa10.63□□□□□ -0.71
CLN3-236ENST00000568558 NIPSNAP3BQ9BS92 247 aa10.63□□□□□ -0.71
CLN3-236ENST00000568558 IGKV1OR2-108A0A075B7D4 117 aa10.62□□□□□ -0.71
CLN3-236ENST00000568558 F6UB75 175 aa10.62□□□□□ -0.71
CLN3-236ENST00000568558 MED14OSP0DP75 135 aa10.62□□□□□ -0.71
CLN3-236ENST00000568558 PSG9Q00887 426 aa10.62□□□□□ -0.71
CLN3-236ENST00000568558 OXA1LQ15070 435 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms