RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 OTORQ9NRC9 128 aa0.7□□□□□ -2.3
VPS35-207ENST00000568191 CKLFQ9UBR5 152 aa0.7□□□□□ -2.3
VPS35-207ENST00000568191 HIGD1AQ9Y241 93 aa0.7□□□□□ -2.3
VPS35-207ENST00000568191 U3KQ87 197 aa0.7□□□□□ -2.3
VPS35-207ENST00000568191 CCDC88CQ9P219 2028 aa0.7□□□□□ -2.3
VPS35-207ENST00000568191 SLX4Q8IY92 1834 aa0.7□□□□□ -2.3
VPS35-207ENST00000568191 SMG6Q86US8 1419 aaKnown RBP0.7□□□□□ -2.3
VPS35-207ENST00000568191 ARFGEF3Q5TH69 2177 aa0.7□□□□□ -2.3
VPS35-207ENST00000568191 KIAA1549Q9HCM3 1950 aa0.7□□□□□ -2.3
VPS35-207ENST00000568191 LAMB2P55268 1798 aa0.7□□□□□ -2.3
VPS35-207ENST00000568191 MED1Q15648 1581 aaPredicted RBP0.7□□□□□ -2.3
VPS35-207ENST00000568191 FREM3P0C091 2139 aa0.7□□□□□ -2.3
VPS35-207ENST00000568191 KDM5BQ9UGL1 1544 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 BAZ2BQ9UIF8 2168 aaKnown RBP0.69□□□□□ -2.3
VPS35-207ENST00000568191 KIF13AQ9H1H9 1805 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 UHRF1BP1LA0JNW5 1464 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 CEP164Q9UPV0 1460 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 TRPM1Q7Z4N2 1603 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 MEIKINA0A087WXM9 373 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 A0A087X0T9 212 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 TRAV5A0A0B4J249 113 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 A0A0D9SEW6 157 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 TRBV7-6A0A0J9YX20 115 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 LOC107984640A0A0U1RRK4 108 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 DHRS12A0PJE2 317 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 IRGMA1A4Y4 181 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 GRIFINA4D1Z8 144 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 C19orf71A6NCJ1 209 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 GGT3PA6NGU5 568 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 TMEM212A6NML5 194 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 FABP5P3A8MUU1 101 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 ATP6V1G2-DDX39BF2Z307 99 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 LY6LH3BQJ8 138 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 C19orf84I3L1E1 186 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 J3QQQ9 107 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 M0R378 163 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 UBFD1O14562 309 aaKnown RBP0.69□□□□□ -2.3
VPS35-207ENST00000568191 OR2T1O43869 369 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 TPST1O60507 370 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 GGCTO75223 188 aaKnown RBP0.69□□□□□ -2.3
VPS35-207ENST00000568191 SMIM24O75264 130 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 PGLYRP1O75594 196 aaPredicted RBP0.69□□□□□ -2.3
VPS35-207ENST00000568191 LY6HO94772 140 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 DPM2O94777 84 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 SOD1P00441 154 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 NPYP01303 97 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 IGF2P01344 180 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 IGHV1-69P01742 117 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 IGHV3-7P01780 117 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 C1QAP02745 245 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 UCHL1P09936 223 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 EVI2AP22794 236 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 NFYBP25208 207 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 S100A4P26447 101 aaKnown RBP0.69□□□□□ -2.3
VPS35-207ENST00000568191 CMPK1P30085 196 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 RNASE4P34096 147 aaKnown RBP0.69□□□□□ -2.3
VPS35-207ENST00000568191 YPEL3P61236 119 aaPredicted RBP0.69□□□□□ -2.3
VPS35-207ENST00000568191 NCS1P62166 190 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 HIST1H4AP62805 103 aaKnown RBP0.69□□□□□ -2.3
VPS35-207ENST00000568191 UBE2BP63146 152 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 RHOGP84095 191 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 HIST1H1AQ02539 215 aaPredicted RBP0.69□□□□□ -2.3
VPS35-207ENST00000568191 RPL18Q07020 188 aaKnown RBP0.69□□□□□ -2.3
VPS35-207ENST00000568191 PLCXD2Q0VAA5 305 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 EIF3IQ13347 325 aaKnown RBP0.69□□□□□ -2.3
VPS35-207ENST00000568191 MSMO1Q15800 293 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 VMA21Q3ZAQ7 101 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 LINC01554Q52M75 96 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 BCL2L15Q5TBC7 163 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 C1orf140Q5VVS0 124 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 Q5XG85 94 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 IDO2Q6ZQW0 420 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 C2orf91Q6ZV80 131 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 LYZL2Q7Z4W2 148 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 IFT20Q8IY31 132 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 TCTE3Q8IZS6 198 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 CNEP1R1Q8N9A8 125 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 SLC30A7Q8NEW0 376 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 OR52R1Q8NGF1 315 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 OR2T10Q8NGZ9 312 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 OR4K15Q8NH41 348 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 TERB2Q8NHR7 220 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 CLDND2Q8NHS1 167 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 WFDC5Q8TCV5 224 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 ZC2HC1AQ96GY0 325 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 ZNF625Q96I27 306 aaPredicted RBP0.69□□□□□ -2.3
VPS35-207ENST00000568191 TEX37Q96LM6 180 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 C12orf57Q99622 126 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 MGLLQ99685 303 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 TXNDC17Q9BRA2 123 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 PRADC1Q9BSG0 188 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 GGACTQ9BVM4 153 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 MND1Q9BWT6 205 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 YIPF3Q9GZM5 350 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 OR8D2Q9GZM6 311 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 LPAR5Q9H1C0 372 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 C16orf95Q9H693 158 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 XAGE1AQ9HD64 81 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 SLC39A9Q9NUM3 307 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 CALML5Q9NZT1 146 aa0.69□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms