RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 SMCO3A2RU48 225 aa15.05■□□□□ -0
CLN3-219ENST00000565778 SSSCA1O60232 199 aa15.05■□□□□ -0
CLN3-219ENST00000565778 SCGB1D2O95969 90 aa15.05■□□□□ -0
CLN3-219ENST00000565778 RBMY1A1P0DJD3 496 aaKnown RBP15.05■□□□□ -0
CLN3-219ENST00000565778 RBMY1CP0DJD4 496 aa15.05■□□□□ -0
CLN3-219ENST00000565778 GATA2P23769 480 aaPredicted RBP15.05■□□□□ -0
CLN3-219ENST00000565778 RBMY1FQ15415 496 aaKnown RBP15.05■□□□□ -0
CLN3-219ENST00000565778 ACOT7LQ6ZUV0 252 aa15.05■□□□□ -0
CLN3-219ENST00000565778 CSNK1G2-AS1Q8NCQ2 148 aa15.05■□□□□ -0
CLN3-219ENST00000565778 SMIM8Q96KF7 97 aa15.05■□□□□ -0
CLN3-219ENST00000565778 GSKIPQ9P0R6 139 aa15.05■□□□□ -0
CLN3-219ENST00000565778 XCL2Q9UBD3 114 aa15.05■□□□□ -0
CLN3-219ENST00000565778 ZNF705EA8MWA4 302 aaPredicted RBP15.04■□□□□ -0
CLN3-219ENST00000565778 PLA2G10O15496 165 aa15.04■□□□□ -0
CLN3-219ENST00000565778 IGKV3-20P01619 116 aa15.04■□□□□ -0
CLN3-219ENST00000565778 IAH1Q2TAA2 248 aaPredicted RBP15.04■□□□□ -0
CLN3-219ENST00000565778 GSG1LQ6UXU4 331 aa15.04■□□□□ -0
CLN3-219ENST00000565778 TMEM182Q6ZP80 229 aaPredicted RBP15.04■□□□□ -0
CLN3-219ENST00000565778 TMEM144Q7Z5S9 345 aa15.04■□□□□ -0
CLN3-219ENST00000565778 SLC25A22Q9H936 323 aa15.04■□□□□ -0
CLN3-219ENST00000565778 HLA-DRB4P13762 266 aa15.03■□□□□ -0
CLN3-219ENST00000565778 S100A7P31151 101 aa15.03■□□□□ -0
CLN3-219ENST00000565778 PSMB3P49720 205 aa15.03■□□□□ -0
CLN3-219ENST00000565778 DEFB1P60022 68 aa15.03■□□□□ -0
CLN3-219ENST00000565778 OR1B1Q8NGR6 318 aa15.03■□□□□ -0
CLN3-219ENST00000565778 MITD1Q8WV92 249 aa15.03■□□□□ -0
CLN3-219ENST00000565778 TMEM147Q9BVK8 224 aa15.03■□□□□ -0
CLN3-219ENST00000565778 SLC45A2Q9UMX9 530 aa15.03■□□□□ -0
CLN3-219ENST00000565778 HLA-DRB4X5D2U9 266 aa15.03■□□□□ -0
CLN3-219ENST00000565778 X6R8D5 127 aa15.03■□□□□ -0
CLN3-219ENST00000565778 HYDINQ4G0P3 5121 aa15.02■□□□□ -0
CLN3-219ENST00000565778 ZNF98A6NK75 572 aa15.02■□□□□ -0
CLN3-219ENST00000565778 LYRM1O43325 122 aa15.02■□□□□ -0
CLN3-219ENST00000565778 IL5P05113 134 aa15.02■□□□□ -0
CLN3-219ENST00000565778 GALR1P47211 349 aa15.02■□□□□ -0
CLN3-219ENST00000565778 GDF5OSQ5U4N7 250 aa15.02■□□□□ -0
CLN3-219ENST00000565778 ZBTB8BQ8NAP8 495 aaPredicted RBP15.02■□□□□ -0
CLN3-219ENST00000565778 C16orf92Q96LL3 132 aa15.02■□□□□ -0
CLN3-219ENST00000565778 RSG1Q9BU20 258 aa15.02■□□□□ -0
CLN3-219ENST00000565778 SAV1Q9H4B6 383 aaPredicted RBP15.02■□□□□ -0
CLN3-219ENST00000565778 ISLRO14498 428 aa15.01□□□□□ -0.01
CLN3-219ENST00000565778 METTL15P1P0C7V9 234 aa15.01□□□□□ -0.01
CLN3-219ENST00000565778 PAX9P55771 341 aa15.01□□□□□ -0.01
CLN3-219ENST00000565778 RRAS2P62070 204 aaPredicted RBP15.01□□□□□ -0.01
CLN3-219ENST00000565778 CYP2G1PQ6ZSU1 146 aa15.01□□□□□ -0.01
CLN3-219ENST00000565778 OR4B1Q8NGF8 309 aa15.01□□□□□ -0.01
CLN3-219ENST00000565778 C2CD4CQ8TF44 421 aa15.01□□□□□ -0.01
CLN3-219ENST00000565778 C20orf85Q9H1P6 137 aa15.01□□□□□ -0.01
CLN3-219ENST00000565778 HRH4Q9H3N8 390 aa15.01□□□□□ -0.01
CLN3-219ENST00000565778 PMS2P5A8MQ11 134 aa15□□□□□ -0.01
CLN3-219ENST00000565778 SOCS3O14543 225 aa15□□□□□ -0.01
CLN3-219ENST00000565778 TCRBP04435 133 aa15□□□□□ -0.01
CLN3-219ENST00000565778 MEOX2P50222 304 aa15□□□□□ -0.01
CLN3-219ENST00000565778 FXYD7P58549 80 aa15□□□□□ -0.01
CLN3-219ENST00000565778 SAMD13Q5VXD3 122 aa15□□□□□ -0.01
CLN3-219ENST00000565778 EBLN2Q6P2I7 272 aa15□□□□□ -0.01
CLN3-219ENST00000565778 FOXI2Q6ZQN5 318 aa15□□□□□ -0.01
CLN3-219ENST00000565778 OR10P1Q8NGE3 313 aa15□□□□□ -0.01
CLN3-219ENST00000565778 SLC25A32Q9H2D1 315 aa15□□□□□ -0.01
CLN3-219ENST00000565778 NPVFQ9HCQ7 196 aa15□□□□□ -0.01
CLN3-219ENST00000565778 DOK5Q9P104 306 aa15□□□□□ -0.01
CLN3-219ENST00000565778 ALMS1Q8TCU4 4167 aa15□□□□□ -0.01
CLN3-219ENST00000565778 PLECQ15149 4684 aaKnown RBP14.99□□□□□ -0.01
CLN3-219ENST00000565778 TRAV6A0A075B6T7 132 aa14.99□□□□□ -0.01
CLN3-219ENST00000565778 ELOA3CA0A087WX78 387 aaPredicted RBP14.99□□□□□ -0.01
CLN3-219ENST00000565778 CCNKO75909 580 aa14.99□□□□□ -0.01
CLN3-219ENST00000565778 HLA-DMBP28068 263 aa14.99□□□□□ -0.01
CLN3-219ENST00000565778 TAS2R30P59541 319 aa14.99□□□□□ -0.01
CLN3-219ENST00000565778 TMEM14EPQ6UXP3 125 aa14.99□□□□□ -0.01
CLN3-219ENST00000565778 RPRMQ9NS64 109 aa14.99□□□□□ -0.01
CLN3-219ENST00000565778 IGLL5B9A064 214 aa14.98□□□□□ -0.01
CLN3-219ENST00000565778 C11orf94C9JXX5 98 aa14.98□□□□□ -0.01
CLN3-219ENST00000565778 RAP2BP61225 183 aa14.98□□□□□ -0.01
CLN3-219ENST00000565778 DLK1P80370 383 aa14.98□□□□□ -0.01
CLN3-219ENST00000565778 ZNF846Q147U1 533 aa14.98□□□□□ -0.01
CLN3-219ENST00000565778 SPATA31B1PQ5VZV4 182 aa14.98□□□□□ -0.01
CLN3-219ENST00000565778 GPR82Q96P67 336 aa14.98□□□□□ -0.01
CLN3-219ENST00000565778 MGAT4CQ9UBM8 478 aa14.98□□□□□ -0.01
CLN3-219ENST00000565778 FAM25EA8MYX2 175 aa14.97□□□□□ -0.01
CLN3-219ENST00000565778 F6UB75 175 aa14.97□□□□□ -0.01
CLN3-219ENST00000565778 CCSO14618 274 aa14.97□□□□□ -0.01
CLN3-219ENST00000565778 TSC22D2O75157 780 aa14.97□□□□□ -0.01
CLN3-219ENST00000565778 HYPMO75409 117 aa14.97□□□□□ -0.01
CLN3-219ENST00000565778 MBPP02686 304 aaPredicted RBP14.97□□□□□ -0.01
CLN3-219ENST00000565778 OR5G3P0C626 314 aa14.97□□□□□ -0.01
CLN3-219ENST00000565778 SELENOTP62341 195 aa14.97□□□□□ -0.01
CLN3-219ENST00000565778 LGALS9CQ6DKI2 356 aa14.97□□□□□ -0.01
CLN3-219ENST00000565778 SLC25A39Q9BZJ4 359 aaPredicted RBP14.97□□□□□ -0.01
CLN3-219ENST00000565778 HIGD1AQ9Y241 93 aa14.97□□□□□ -0.01
CLN3-219ENST00000565778 IGHV3OR16-12A0A075B7B8 117 aa14.96□□□□□ -0.01
CLN3-219ENST00000565778 L7N2F9 121 aa14.96□□□□□ -0.01
CLN3-219ENST00000565778 LINC00869P0C866 280 aa14.96□□□□□ -0.01
CLN3-219ENST00000565778 VAMP2P63027 116 aa14.96□□□□□ -0.01
CLN3-219ENST00000565778 FGL1Q08830 312 aa14.96□□□□□ -0.01
CLN3-219ENST00000565778 FAM78BQ5VT40 261 aa14.96□□□□□ -0.01
CLN3-219ENST00000565778 C20orf173Q96LM9 149 aa14.96□□□□□ -0.01
CLN3-219ENST00000565778 CLUHP3Q96NS8 147 aa14.96□□□□□ -0.01
CLN3-219ENST00000565778 SCRT1Q9BWW7 348 aa14.96□□□□□ -0.01
CLN3-219ENST00000565778 NUDT15Q9NV35 164 aa14.96□□□□□ -0.01
CLN3-219ENST00000565778 A0A0J9YX75 114 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms