RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 TIGITQ495A1 244 aa6.99□□□□□ -1.29
VPS39-207ENST00000563692 SPATA31B1PQ5VZV4 182 aa6.99□□□□□ -1.29
VPS39-207ENST00000563692 LINC00305Q7Z4B0 112 aa6.99□□□□□ -1.29
VPS39-207ENST00000563692 CYB561D1Q8N8Q1 229 aa6.99□□□□□ -1.29
VPS39-207ENST00000563692 TVP23CQ96ET8 276 aa6.99□□□□□ -1.29
VPS39-207ENST00000563692 OR51M1Q9H341 326 aa6.99□□□□□ -1.29
VPS39-207ENST00000563692 DOK5Q9P104 306 aa6.99□□□□□ -1.29
VPS39-207ENST00000563692 HIGD1AQ9Y241 93 aa6.99□□□□□ -1.29
VPS39-207ENST00000563692 PUS1Q9Y606 427 aaKnown RBP eCLIP6.99□□□□□ -1.29
VPS39-207ENST00000563692 TNCP24821 2201 aa6.99□□□□□ -1.29
VPS39-207ENST00000563692 TRBV7-1A0A0A6YYK4 115 aa6.98□□□□□ -1.29
VPS39-207ENST00000563692 TRBV9A0A0B4J1U6 114 aa6.98□□□□□ -1.29
VPS39-207ENST00000563692 PSMB11A5LHX3 300 aa6.98□□□□□ -1.29
VPS39-207ENST00000563692 ZNF727A8MUV8 499 aa6.98□□□□□ -1.29
VPS39-207ENST00000563692 B4DEV8 164 aa6.98□□□□□ -1.29
VPS39-207ENST00000563692 H3BQ15 152 aa6.98□□□□□ -1.29
VPS39-207ENST00000563692 H3BUA1 57 aa6.98□□□□□ -1.29
VPS39-207ENST00000563692 AP4M1O00189 453 aa6.98□□□□□ -1.29
VPS39-207ENST00000563692 NUPL2O15504 423 aaKnown RBP6.98□□□□□ -1.29
VPS39-207ENST00000563692 SCO1O75880 301 aa6.98□□□□□ -1.29
VPS39-207ENST00000563692 BRI3O95415 125 aa6.98□□□□□ -1.29
VPS39-207ENST00000563692 IGHG2P01859 326 aa6.98□□□□□ -1.29
VPS39-207ENST00000563692 AMY1AP04745 511 aa6.98□□□□□ -1.29
VPS39-207ENST00000563692 CD81P60033 236 aa6.98□□□□□ -1.29
VPS39-207ENST00000563692 UBE2G2P60604 165 aa6.98□□□□□ -1.29
VPS39-207ENST00000563692 ATP5G2Q06055 141 aa6.98□□□□□ -1.29
VPS39-207ENST00000563692 PNRC1Q12796 327 aaPredicted RBP6.98□□□□□ -1.29
VPS39-207ENST00000563692 RHEBQ15382 184 aa6.98□□□□□ -1.29
VPS39-207ENST00000563692 PATE2Q6UY27 113 aa6.98□□□□□ -1.29
VPS39-207ENST00000563692 OR5AU1Q8NGC0 362 aa6.98□□□□□ -1.29
VPS39-207ENST00000563692 EEF1AKMT3Q96AZ1 226 aa6.98□□□□□ -1.29
VPS39-207ENST00000563692 ATP6V0BQ99437 205 aa6.98□□□□□ -1.29
VPS39-207ENST00000563692 PAXXQ9BUH6 204 aa6.98□□□□□ -1.29
VPS39-207ENST00000563692 PRELID1Q9Y255 219 aa6.98□□□□□ -1.29
VPS39-207ENST00000563692 NBEAL1Q6ZS30 2694 aa6.98□□□□□ -1.29
VPS39-207ENST00000563692 A0A1W2PRE2 83 aa6.97□□□□□ -1.29
VPS39-207ENST00000563692 SH2D7A6NKC9 451 aaPredicted RBP6.97□□□□□ -1.29
VPS39-207ENST00000563692 FAM223BA6NKX1 122 aa6.97□□□□□ -1.29
VPS39-207ENST00000563692 FAM74A7A6NL05 159 aa6.97□□□□□ -1.29
VPS39-207ENST00000563692 LINC01548A6NM66 108 aa6.97□□□□□ -1.29
VPS39-207ENST00000563692 G3V318 75 aa6.97□□□□□ -1.29
VPS39-207ENST00000563692 NDUFA7O95182 113 aa6.97□□□□□ -1.29
VPS39-207ENST00000563692 IGKV1-17P01599 117 aa6.97□□□□□ -1.29
VPS39-207ENST00000563692 IGHV4-59P01825 116 aa6.97□□□□□ -1.29
VPS39-207ENST00000563692 LYZP61626 148 aa6.97□□□□□ -1.29
VPS39-207ENST00000563692 RHOGP84095 191 aa6.97□□□□□ -1.29
VPS39-207ENST00000563692 TMEM241Q24JQ0 296 aa6.97□□□□□ -1.29
VPS39-207ENST00000563692 C15orf32Q32M92 178 aa6.97□□□□□ -1.29
VPS39-207ENST00000563692 ATRAIDQ6UW56 229 aa6.97□□□□□ -1.29
VPS39-207ENST00000563692 FAM223AQ8IWN6 122 aa6.97□□□□□ -1.29
VPS39-207ENST00000563692 SLC25A2Q9BXI2 301 aa6.97□□□□□ -1.29
VPS39-207ENST00000563692 RPS10P5Q9NQ39 176 aa6.97□□□□□ -1.29
VPS39-207ENST00000563692 SMCO4Q9NRQ5 59 aa6.97□□□□□ -1.29
VPS39-207ENST00000563692 VPREB3Q9UKI3 123 aa6.97□□□□□ -1.29
VPS39-207ENST00000563692 ANK2Q01484 3957 aa6.97□□□□□ -1.29
VPS39-207ENST00000563692 TRAV5A0A0B4J249 113 aa6.96□□□□□ -1.3
VPS39-207ENST00000563692 WI2-2373I1.2A0A1W2PRP0 233 aa6.96□□□□□ -1.3
VPS39-207ENST00000563692 CLPSL1A2RUU4 121 aa6.96□□□□□ -1.3
VPS39-207ENST00000563692 C7orf77A4D0Y5 90 aa6.96□□□□□ -1.3
VPS39-207ENST00000563692 OR2C1O95371 312 aa6.96□□□□□ -1.3
VPS39-207ENST00000563692 IL4P05112 153 aa6.96□□□□□ -1.3
VPS39-207ENST00000563692 CLEC3BP05452 202 aa6.96□□□□□ -1.3
VPS39-207ENST00000563692 BLCAPP62952 87 aa6.96□□□□□ -1.3
VPS39-207ENST00000563692 UBE2L3P68036 154 aaKnown RBP6.96□□□□□ -1.3
VPS39-207ENST00000563692 ZNF674Q2M3X9 581 aa6.96□□□□□ -1.3
VPS39-207ENST00000563692 PRR31Q5SQ13 230 aa6.96□□□□□ -1.3
VPS39-207ENST00000563692 FAM90A2PQ658T7 463 aa6.96□□□□□ -1.3
VPS39-207ENST00000563692 ZNF491Q8N8L2 437 aa6.96□□□□□ -1.3
VPS39-207ENST00000563692 ZNF502Q8TBZ5 544 aa6.96□□□□□ -1.3
VPS39-207ENST00000563692 TMEM190Q8WZ59 177 aa6.96□□□□□ -1.3
VPS39-207ENST00000563692 RPUSD4Q96CM3 377 aaKnown RBP6.96□□□□□ -1.3
VPS39-207ENST00000563692 RNF125Q96EQ8 232 aa6.96□□□□□ -1.3
VPS39-207ENST00000563692 USMG5Q96IX5 58 aa6.96□□□□□ -1.3
VPS39-207ENST00000563692 FAM167A-AS1Q96KT0 104 aa6.96□□□□□ -1.3
VPS39-207ENST00000563692 MS4A10Q96PG2 267 aa6.96□□□□□ -1.3
VPS39-207ENST00000563692 SMIM7Q9BQ49 75 aa6.96□□□□□ -1.3
VPS39-207ENST00000563692 PRSS22Q9GZN4 317 aa6.96□□□□□ -1.3
VPS39-207ENST00000563692 MRPL27Q9P0M9 148 aaKnown RBP6.96□□□□□ -1.3
VPS39-207ENST00000563692 NAT8Q9UHE5 227 aa6.96□□□□□ -1.3
VPS39-207ENST00000563692 ZNF580Q9UK33 172 aa6.96□□□□□ -1.3
VPS39-207ENST00000563692 A0A0G2JLM5 398 aa6.95□□□□□ -1.3
VPS39-207ENST00000563692 OR2T8A6NH00 312 aa6.95□□□□□ -1.3
VPS39-207ENST00000563692 TRGV3P03979 118 aa6.95□□□□□ -1.3
VPS39-207ENST00000563692 CTSGP08311 255 aa6.95□□□□□ -1.3
VPS39-207ENST00000563692 OR10J4P0C629 311 aa6.95□□□□□ -1.3
VPS39-207ENST00000563692 ATP5G3P48201 142 aa6.95□□□□□ -1.3
VPS39-207ENST00000563692 RELQ04864 619 aaPredicted RBP6.95□□□□□ -1.3
VPS39-207ENST00000563692 ZNF600Q6ZNG1 722 aa6.95□□□□□ -1.3
VPS39-207ENST00000563692 BPIFA4PQ86YQ2 179 aa6.95□□□□□ -1.3
VPS39-207ENST00000563692 WFDC12Q8WWY7 111 aa6.95□□□□□ -1.3
VPS39-207ENST00000563692 TCEAL7Q9BRU2 100 aa6.95□□□□□ -1.3
VPS39-207ENST00000563692 C20orf24Q9BUV8 137 aa6.95□□□□□ -1.3
VPS39-207ENST00000563692 SLC25A39Q9BZJ4 359 aaPredicted RBP6.95□□□□□ -1.3
VPS39-207ENST00000563692 PARLQ9H300 379 aa6.95□□□□□ -1.3
VPS39-207ENST00000563692 TUBA4BQ9H853 241 aa6.95□□□□□ -1.3
VPS39-207ENST00000563692 SDF2L1Q9HCN8 221 aa6.95□□□□□ -1.3
VPS39-207ENST00000563692 TMEM14CQ9P0S9 112 aa6.95□□□□□ -1.3
VPS39-207ENST00000563692 RNF114Q9Y508 228 aa6.95□□□□□ -1.3
VPS39-207ENST00000563692 S4R3C0 116 aa6.95□□□□□ -1.3
VPS39-207ENST00000563692 DNASE2O00115 360 aaPredicted RBP6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms