RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 Q8WTZ3 238 aa16.52■□□□□ 0.24
CLN3-209ENST00000561689 RNF125Q96EQ8 232 aa16.52■□□□□ 0.24
CLN3-209ENST00000561689 H3BUA1 57 aa16.51■□□□□ 0.23
CLN3-209ENST00000561689 CST9LP1Q5W188 147 aa16.51■□□□□ 0.23
CLN3-209ENST00000561689 MRPL27Q9P0M9 148 aaKnown RBP16.51■□□□□ 0.23
CLN3-209ENST00000561689 SCGB2A1O75556 95 aa16.51■□□□□ 0.23
CLN3-209ENST00000561689 LY6G6DO95868 133 aa16.51■□□□□ 0.23
CLN3-209ENST00000561689 PYYP10082 97 aa16.51■□□□□ 0.23
CLN3-209ENST00000561689 C20orf24Q9BUV8 137 aa16.51■□□□□ 0.23
CLN3-209ENST00000561689 GNB4Q9HAV0 340 aa16.51■□□□□ 0.23
CLN3-209ENST00000561689 ZNF580Q9UK33 172 aa16.51■□□□□ 0.23
CLN3-209ENST00000561689 WI2-2373I1.2A0A1W2PRP0 233 aa16.5■□□□□ 0.23
CLN3-209ENST00000561689 DNAJC9-AS1A6NH13 148 aa16.5■□□□□ 0.23
CLN3-209ENST00000561689 C11orf94C9JXX5 98 aa16.5■□□□□ 0.23
CLN3-209ENST00000561689 BRI3O95415 125 aa16.5■□□□□ 0.23
CLN3-209ENST00000561689 USF2Q15853 346 aaPredicted RBP16.5■□□□□ 0.23
CLN3-209ENST00000561689 AWAT1Q58HT5 328 aa16.5■□□□□ 0.23
CLN3-209ENST00000561689 SOHLH1Q5JUK2 328 aa16.5■□□□□ 0.23
CLN3-209ENST00000561689 C10orf99Q6UWK7 81 aa16.5■□□□□ 0.23
CLN3-209ENST00000561689 TMEM86BQ8N661 226 aa16.5■□□□□ 0.23
CLN3-209ENST00000561689 OR4F5Q8NH21 305 aa16.5■□□□□ 0.23
CLN3-209ENST00000561689 OR4F4Q96R69 305 aa16.5■□□□□ 0.23
CLN3-209ENST00000561689 YTHDF2Q9Y5A9 579 aaKnown RBP16.5■□□□□ 0.23
CLN3-209ENST00000561689 PUS1Q9Y606 427 aaKnown RBP eCLIP16.5■□□□□ 0.23
CLN3-209ENST00000561689 OR2C1O95371 312 aa16.49■□□□□ 0.23
CLN3-209ENST00000561689 SNRPCP09234 159 aaKnown RBP16.49■□□□□ 0.23
CLN3-209ENST00000561689 ATP5G3P48201 142 aa16.49■□□□□ 0.23
CLN3-209ENST00000561689 SLC25A39Q9BZJ4 359 aaPredicted RBP16.49■□□□□ 0.23
CLN3-209ENST00000561689 MTORP42345 2549 aa16.49■□□□□ 0.23
CLN3-209ENST00000561689 IGHV3OR16-8A0A075B7F1 116 aa16.49■□□□□ 0.23
CLN3-209ENST00000561689 IGHV3-11P01762 117 aa16.49■□□□□ 0.23
CLN3-209ENST00000561689 TAGLN2P37802 199 aaKnown RBP16.49■□□□□ 0.23
CLN3-209ENST00000561689 RAB9AP51151 201 aa16.49■□□□□ 0.23
CLN3-209ENST00000561689 UBE2L3P68036 154 aaKnown RBP16.49■□□□□ 0.23
CLN3-209ENST00000561689 PAXXQ9BUH6 204 aa16.49■□□□□ 0.23
CLN3-209ENST00000561689 TMEM167BQ9NRX6 74 aa16.49■□□□□ 0.23
CLN3-209ENST00000561689 GAR1Q9NY12 217 aaKnown RBP16.49■□□□□ 0.23
CLN3-209ENST00000561689 PPP5D1E7EU14 171 aa16.48■□□□□ 0.23
CLN3-209ENST00000561689 OR51M1Q9H341 326 aa16.48■□□□□ 0.23
CLN3-209ENST00000561689 ESM1Q9NQ30 184 aa16.48■□□□□ 0.23
CLN3-209ENST00000561689 TGOLN2O43493 480 aa16.47■□□□□ 0.23
CLN3-209ENST00000561689 SMUG1Q53HV7 270 aa16.47■□□□□ 0.23
CLN3-209ENST00000561689 ZNF414Q96IQ9 312 aa16.47■□□□□ 0.23
CLN3-209ENST00000561689 USMG5Q96IX5 58 aa16.47■□□□□ 0.23
CLN3-209ENST00000561689 RPS10P5Q9NQ39 176 aa16.47■□□□□ 0.23
CLN3-209ENST00000561689 CUBNO60494 3623 aa16.47■□□□□ 0.23
CLN3-209ENST00000561689 C7orf77A4D0Y5 90 aa16.47■□□□□ 0.23
CLN3-209ENST00000561689 M0R036 132 aa16.47■□□□□ 0.23
CLN3-209ENST00000561689 IGHG4P01861 327 aa16.47■□□□□ 0.23
CLN3-209ENST00000561689 TMEM160Q9NX00 188 aa16.47■□□□□ 0.23
CLN3-209ENST00000561689 FAM181BA6NEQ2 426 aa16.46■□□□□ 0.23
CLN3-209ENST00000561689 ZNF600Q6ZNG1 722 aa16.46■□□□□ 0.23
CLN3-209ENST00000561689 Q71RC1 249 aaPredicted RBP16.46■□□□□ 0.23
CLN3-209ENST00000561689 TRBV12-3P01733 135 aa16.46■□□□□ 0.22
CLN3-209ENST00000561689 SRD5A1P18405 259 aa16.46■□□□□ 0.22
CLN3-209ENST00000561689 PSMB8P28062 276 aa16.46■□□□□ 0.22
CLN3-209ENST00000561689 FAM90A2PQ658T7 463 aa16.46■□□□□ 0.22
CLN3-209ENST00000561689 TOMM20LQ6UXN7 152 aa16.46■□□□□ 0.22
CLN3-209ENST00000561689 FXYD5Q96DB9 178 aa16.46■□□□□ 0.22
CLN3-209ENST00000561689 SHANK2-AS3Q9BTD1 123 aa16.46■□□□□ 0.22
CLN3-209ENST00000561689 HIVEP2P31629 2446 aa16.45■□□□□ 0.22
CLN3-209ENST00000561689 COLCA2A8K830 154 aa16.44■□□□□ 0.22
CLN3-209ENST00000561689 Q8N2B8 174 aa16.44■□□□□ 0.22
CLN3-209ENST00000561689 STXBP6Q8NFX7 210 aa16.44■□□□□ 0.22
CLN3-209ENST00000561689 SMCO4Q9NRQ5 59 aa16.44■□□□□ 0.22
CLN3-209ENST00000561689 A0A0G2JLM5 398 aa16.44■□□□□ 0.22
CLN3-209ENST00000561689 H3BRN7 92 aa16.44■□□□□ 0.22
CLN3-209ENST00000561689 GP9P14770 177 aa16.44■□□□□ 0.22
CLN3-209ENST00000561689 ARL3P36405 182 aa16.44■□□□□ 0.22
CLN3-209ENST00000561689 OR4X2Q8NGF9 303 aa16.44■□□□□ 0.22
CLN3-209ENST00000561689 RPUSD4Q96CM3 377 aaKnown RBP16.44■□□□□ 0.22
CLN3-209ENST00000561689 NPPCP23582 126 aa16.43■□□□□ 0.22
CLN3-209ENST00000561689 SCGB2A2Q13296 93 aa16.43■□□□□ 0.22
CLN3-209ENST00000561689 OR5B12Q96R08 314 aa16.43■□□□□ 0.22
CLN3-209ENST00000561689 ATP6V0BQ99437 205 aa16.43■□□□□ 0.22
CLN3-209ENST00000561689 SERTAD4Q9NUC0 356 aa16.43■□□□□ 0.22
CLN3-209ENST00000561689 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP16.42■□□□□ 0.22
CLN3-209ENST00000561689 TMEM250H0YL14 139 aa16.42■□□□□ 0.22
CLN3-209ENST00000561689 PDE6DO43924 150 aa16.42■□□□□ 0.22
CLN3-209ENST00000561689 SLC35B1P78383 322 aa16.42■□□□□ 0.22
CLN3-209ENST00000561689 ZNF674Q2M3X9 581 aa16.42■□□□□ 0.22
CLN3-209ENST00000561689 BLNKQ8WV28 456 aa16.42■□□□□ 0.22
CLN3-209ENST00000561689 ZFAND3Q9H8U3 227 aa16.42■□□□□ 0.22
CLN3-209ENST00000561689 ZNF98A6NK75 572 aa16.42■□□□□ 0.22
CLN3-209ENST00000561689 H3BTX0 84 aa16.42■□□□□ 0.22
CLN3-209ENST00000561689 BMPR1BO00238 502 aa16.42■□□□□ 0.22
CLN3-209ENST00000561689 CD99P14209 185 aa16.42■□□□□ 0.22
CLN3-209ENST00000561689 RELQ04864 619 aaPredicted RBP16.42■□□□□ 0.22
CLN3-209ENST00000561689 TEX38Q6PEX7 206 aa16.42■□□□□ 0.22
CLN3-209ENST00000561689 RABAC1Q9UI14 185 aa16.42■□□□□ 0.22
CLN3-209ENST00000561689 CDC42EP3Q9UKI2 254 aa16.42■□□□□ 0.22
CLN3-209ENST00000561689 GGTLC3B5MD39 225 aa16.41■□□□□ 0.22
CLN3-209ENST00000561689 H3BQ15 152 aa16.41■□□□□ 0.22
CLN3-209ENST00000561689 RPLP1P05386 114 aaKnown RBP16.41■□□□□ 0.22
CLN3-209ENST00000561689 ZNF343Q6P1L6 599 aa16.41■□□□□ 0.22
CLN3-209ENST00000561689 ISOC2Q96AB3 205 aa16.41■□□□□ 0.22
CLN3-209ENST00000561689 TXNDC17Q9BRA2 123 aa16.41■□□□□ 0.22
CLN3-209ENST00000561689 NF1P21359 2839 aa16.41■□□□□ 0.22
CLN3-209ENST00000561689 SCO2A0A1W2PP80 73 aa16.4■□□□□ 0.22
CLN3-209ENST00000561689 ARL2-SNX15V9GYD0 113 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms