RNA–Protein interactions for RNA: ENST00000559771.5

USP3-215, Transcript of ubiquitin specific peptidase 3, human

TSL 4

Gene USP3, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP3-215	ENST00000559771	UPK2	O00526	184 aa		4.27	□□□□□ -1.73
USP3-215	ENST00000559771	TNFSF12	O43508	249 aa		4.27	□□□□□ -1.73
USP3-215	ENST00000559771	DFFB	O76075	338 aa		4.27	□□□□□ -1.73
USP3-215	ENST00000559771	SNAPIN	O95295	136 aa		4.27	□□□□□ -1.73
USP3-215	ENST00000559771	APOC3	P02656	99 aa		4.27	□□□□□ -1.73
USP3-215	ENST00000559771	SPP1	P10451	314 aa		4.27	□□□□□ -1.73
USP3-215	ENST00000559771	HIST1H1B	P16401	226 aa	Known RBP	4.27	□□□□□ -1.73
USP3-215	ENST00000559771	F2R	P25116	425 aa		4.27	□□□□□ -1.73
USP3-215	ENST00000559771	GPR183	P32249	361 aa		4.27	□□□□□ -1.73
USP3-215	ENST00000559771	NKX2-1	P43699	371 aa	Predicted RBP	4.27	□□□□□ -1.73
USP3-215	ENST00000559771	ELL	P55199	621 aa	Predicted RBP	4.27	□□□□□ -1.73
USP3-215	ENST00000559771	TAS2R30	P59541	319 aa		4.27	□□□□□ -1.73
USP3-215	ENST00000559771	FXYD4	P59646	89 aa		4.27	□□□□□ -1.73
USP3-215	ENST00000559771	PMS2P11	Q13670	270 aa		4.27	□□□□□ -1.73
USP3-215	ENST00000559771	DEFB135	Q30KP9	77 aa		4.27	□□□□□ -1.73
USP3-215	ENST00000559771	FAM106A	Q4KMX7	169 aa		4.27	□□□□□ -1.73
USP3-215	ENST00000559771	PHLDA2	Q53GA4	152 aa		4.27	□□□□□ -1.73
USP3-215	ENST00000559771	NMS	Q5H8A3	153 aa		4.27	□□□□□ -1.73
USP3-215	ENST00000559771	CEMP1	Q6PRD7	247 aa	Predicted RBP	4.27	□□□□□ -1.73
USP3-215	ENST00000559771	ZNF66	Q6ZN08	573 aa		4.27	□□□□□ -1.73
USP3-215	ENST00000559771		Q6ZWC4	215 aa		4.27	□□□□□ -1.73
USP3-215	ENST00000559771	SLC16A13	Q7RTY0	426 aa		4.27	□□□□□ -1.73
USP3-215	ENST00000559771	LYZL2	Q7Z4W2	148 aa		4.27	□□□□□ -1.73
USP3-215	ENST00000559771	TBC1D26	Q86UD7	250 aa		4.27	□□□□□ -1.73
USP3-215	ENST00000559771	FAM219A	Q8IW50	185 aa		4.27	□□□□□ -1.73
USP3-215	ENST00000559771	SELENOH	Q8IZQ5	122 aa	Known RBP	4.27	□□□□□ -1.73
USP3-215	ENST00000559771	OR2C3	Q8N628	320 aa		4.27	□□□□□ -1.73
USP3-215	ENST00000559771	BPIFC	Q8NFQ6	507 aa		4.27	□□□□□ -1.73
USP3-215	ENST00000559771	OR1S2	Q8NGQ3	325 aa		4.27	□□□□□ -1.73
USP3-215	ENST00000559771	PCNP	Q8WW12	178 aa	Known RBP	4.27	□□□□□ -1.73
USP3-215	ENST00000559771	TMED6	Q8WW62	240 aa		4.27	□□□□□ -1.73
USP3-215	ENST00000559771	TMEM190	Q8WZ59	177 aa		4.27	□□□□□ -1.73
USP3-215	ENST00000559771	EEF1AKMT3	Q96AZ1	226 aa		4.27	□□□□□ -1.73
USP3-215	ENST00000559771	GNPNAT1	Q96EK6	184 aa	Predicted RBP	4.27	□□□□□ -1.73
USP3-215	ENST00000559771	RAB40C	Q96S21	281 aa		4.27	□□□□□ -1.73
USP3-215	ENST00000559771	CHRDL1	Q9BU40	450 aa		4.27	□□□□□ -1.73
USP3-215	ENST00000559771	LYRM2	Q9NU23	88 aa	Predicted RBP	4.27	□□□□□ -1.73
USP3-215	ENST00000559771	MRPL27	Q9P0M9	148 aa	Known RBP	4.27	□□□□□ -1.73
USP3-215	ENST00000559771	FBXL17	Q9UF56	701 aa		4.27	□□□□□ -1.73
USP3-215	ENST00000559771	TP53TG1	Q9Y2A0	90 aa		4.27	□□□□□ -1.73
USP3-215	ENST00000559771	DNAH6	Q9C0G6	4158 aa		4.27	□□□□□ -1.73
USP3-215	ENST00000559771	FAT2	Q9NYQ8	4349 aa		4.26	□□□□□ -1.73
USP3-215	ENST00000559771	IGHV3OR16-8	A0A075B7F1	116 aa		4.26	□□□□□ -1.73
USP3-215	ENST00000559771	TEX50	A0A1B0GTY4	177 aa		4.26	□□□□□ -1.73
USP3-215	ENST00000559771	CXorf65	A6NEN9	183 aa		4.26	□□□□□ -1.73
USP3-215	ENST00000559771	TSPAN4	O14817	238 aa		4.26	□□□□□ -1.73
USP3-215	ENST00000559771	RBFOX2	O43251	390 aa	Known RBP eCLIP	4.26	□□□□□ -1.73	9e-6	■□□□□ 10.4
USP3-215	ENST00000559771	TGOLN2	O43493	480 aa		4.26	□□□□□ -1.73
USP3-215	ENST00000559771	SPRY2	O43597	315 aa		4.26	□□□□□ -1.73
USP3-215	ENST00000559771	PITX3	O75364	302 aa		4.26	□□□□□ -1.73
USP3-215	ENST00000559771	NDUFS6	O75380	124 aa	Known RBP	4.26	□□□□□ -1.73
USP3-215	ENST00000559771	MED6	O75586	246 aa		4.26	□□□□□ -1.73
USP3-215	ENST00000559771	PGLYRP1	O75594	196 aa	Predicted RBP	4.26	□□□□□ -1.73
USP3-215	ENST00000559771	HRAS	P01112	189 aa		4.26	□□□□□ -1.73
USP3-215	ENST00000559771	CD5	P06127	495 aa		4.26	□□□□□ -1.73
USP3-215	ENST00000559771	SERPINE2	P07093	398 aa		4.26	□□□□□ -1.73
USP3-215	ENST00000559771	FCGR2B	P31994	310 aa	Predicted RBP	4.26	□□□□□ -1.73
USP3-215	ENST00000559771	RAB2A	P61019	212 aa		4.26	□□□□□ -1.73
USP3-215	ENST00000559771	VAMP2	P63027	116 aa		4.26	□□□□□ -1.73
USP3-215	ENST00000559771	PEA15	Q15121	130 aa		4.26	□□□□□ -1.73
USP3-215	ENST00000559771	SP6	Q3SY56	376 aa		4.26	□□□□□ -1.73
USP3-215	ENST00000559771	FAM74A1	Q5RGS3	127 aa		4.26	□□□□□ -1.73
USP3-215	ENST00000559771	PXDC1	Q5TGL8	231 aa		4.26	□□□□□ -1.73
USP3-215	ENST00000559771	RPL7L1	Q6DKI1	246 aa	Known RBP	4.26	□□□□□ -1.73
USP3-215	ENST00000559771	ZNF818P	Q6ZRF7	136 aa		4.26	□□□□□ -1.73
USP3-215	ENST00000559771	SLC35G3	Q8N808	338 aa		4.26	□□□□□ -1.73
USP3-215	ENST00000559771	DMBX1	Q8NFW5	382 aa		4.26	□□□□□ -1.73
USP3-215	ENST00000559771	OR1L6	Q8NGR2	347 aa		4.26	□□□□□ -1.73
USP3-215	ENST00000559771	OR4A5	Q8NH83	315 aa		4.26	□□□□□ -1.73
USP3-215	ENST00000559771	SECTM1	Q8WVN6	248 aa		4.26	□□□□□ -1.73
USP3-215	ENST00000559771	RNF183	Q96D59	192 aa		4.26	□□□□□ -1.73
USP3-215	ENST00000559771	NARS2	Q96I59	477 aa	Known RBP	4.26	□□□□□ -1.73
USP3-215	ENST00000559771	TP53RK	Q96S44	253 aa		4.26	□□□□□ -1.73
USP3-215	ENST00000559771	SPAG8	Q99932	426 aa	Predicted RBP	4.26	□□□□□ -1.73
USP3-215	ENST00000559771	PBDC1	Q9BVG4	233 aa		4.26	□□□□□ -1.73
USP3-215	ENST00000559771	NKX6-2	Q9C056	277 aa	Predicted RBP	4.26	□□□□□ -1.73
USP3-215	ENST00000559771	C11orf1	Q9H5F2	150 aa		4.26	□□□□□ -1.73
USP3-215	ENST00000559771	MAP6D1	Q9H9H5	199 aa		4.26	□□□□□ -1.73
USP3-215	ENST00000559771	UQCC1	Q9NVA1	299 aa		4.26	□□□□□ -1.73
USP3-215	ENST00000559771	LSM5	Q9Y4Y9	91 aa	Known RBP	4.26	□□□□□ -1.73
USP3-215	ENST00000559771	DNAH2	Q9P225	4427 aa		4.26	□□□□□ -1.73
USP3-215	ENST00000559771	KIR2DL5B	A0A0G2JN68	375 aa		4.25	□□□□□ -1.73
USP3-215	ENST00000559771	KIR2DL5B	A0A0G2JPC4	375 aa		4.25	□□□□□ -1.73
USP3-215	ENST00000559771	NUPR2	A6NF83	97 aa		4.25	□□□□□ -1.73
USP3-215	ENST00000559771	OR2T8	A6NH00	312 aa		4.25	□□□□□ -1.73
USP3-215	ENST00000559771		F8W036	122 aa		4.25	□□□□□ -1.73
USP3-215	ENST00000559771		K7EIM0	57 aa		4.25	□□□□□ -1.73
USP3-215	ENST00000559771	WRB	O00258	174 aa		4.25	□□□□□ -1.73
USP3-215	ENST00000559771	SCGB1D2	O95969	90 aa		4.25	□□□□□ -1.73
USP3-215	ENST00000559771	HPRT1	P00492	218 aa		4.25	□□□□□ -1.73
USP3-215	ENST00000559771	CTSG	P08311	255 aa		4.25	□□□□□ -1.73
USP3-215	ENST00000559771	DEFA4	P12838	97 aa		4.25	□□□□□ -1.73
USP3-215	ENST00000559771	NQO2	P16083	231 aa		4.25	□□□□□ -1.73
USP3-215	ENST00000559771	RPL35A	P18077	110 aa	Known RBP	4.25	□□□□□ -1.73
USP3-215	ENST00000559771	BMI1	P35226	326 aa		4.25	□□□□□ -1.73
USP3-215	ENST00000559771	BTN1A1	Q13410	526 aa		4.25	□□□□□ -1.73
USP3-215	ENST00000559771	RBPMS2	Q6ZRY4	209 aa	Known RBP	4.25	□□□□□ -1.73
USP3-215	ENST00000559771	STX12	Q86Y82	276 aa		4.25	□□□□□ -1.73
USP3-215	ENST00000559771	APRG1	Q8IVJ8	170 aa		4.25	□□□□□ -1.73
USP3-215	ENST00000559771	KIR2DL5A	Q8N109	375 aa		4.25	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms