RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 TRAV26-1A0A087WT03 109 aa8.8□□□□□ -1
USP3-206ENST00000558157 C22orf46C9J442 243 aa8.8□□□□□ -1
USP3-206ENST00000558157 FCGR3BO75015 233 aa8.8□□□□□ -1
USP3-206ENST00000558157 PLP2Q04941 152 aa8.8□□□□□ -1
USP3-206ENST00000558157 AESQ08117 197 aa8.8□□□□□ -1
USP3-206ENST00000558157 LGALS9BQ3B8N2 356 aa8.8□□□□□ -1
USP3-206ENST00000558157 LGALS9CQ6DKI2 356 aa8.8□□□□□ -1
USP3-206ENST00000558157 CCDC144NLQ6NUI1 221 aa8.8□□□□□ -1
USP3-206ENST00000558157 RBPMS2Q6ZRY4 209 aaKnown RBP8.8□□□□□ -1
USP3-206ENST00000558157 VKORC1Q9BQB6 163 aa8.8□□□□□ -1
USP3-206ENST00000558157 AP5S1Q9NUS5 200 aa8.8□□□□□ -1
USP3-206ENST00000558157 ZNF492Q9P255 531 aa8.8□□□□□ -1
USP3-206ENST00000558157 AGFG2O95081 481 aa8.79□□□□□ -1
USP3-206ENST00000558157 IGHV3-7P01780 117 aa8.79□□□□□ -1
USP3-206ENST00000558157 HSPE1P61604 102 aaKnown RBP8.79□□□□□ -1
USP3-206ENST00000558157 UBE2L3P68036 154 aaKnown RBP8.79□□□□□ -1
USP3-206ENST00000558157 C5orf64Q2M2E5 130 aa8.79□□□□□ -1
USP3-206ENST00000558157 TMEM140Q9NV12 185 aa8.79□□□□□ -1
USP3-206ENST00000558157 CHEK1O14757 476 aa8.79□□□□□ -1
USP3-206ENST00000558157 CT45A10P0DMU9 189 aa8.79□□□□□ -1
USP3-206ENST00000558157 Q6ZR03 302 aa8.79□□□□□ -1
USP3-206ENST00000558157 ZNF329Q86UD4 541 aa8.79□□□□□ -1
USP3-206ENST00000558157 GCSAMQ8N6F7 178 aa8.79□□□□□ -1
USP3-206ENST00000558157 TMEM14BQ9NUH8 114 aa8.79□□□□□ -1
USP3-206ENST00000558157 KLF12Q9Y4X4 402 aa8.79□□□□□ -1
USP3-206ENST00000558157 K7EQM0 130 aa8.78□□□□□ -1
USP3-206ENST00000558157 HAX1O00165 279 aa8.78□□□□□ -1
USP3-206ENST00000558157 PRR7Q8TB68 274 aa8.78□□□□□ -1
USP3-206ENST00000558157 PIFOQ8TCI5 191 aa8.78□□□□□ -1
USP3-206ENST00000558157 RND1Q92730 232 aa8.78□□□□□ -1
USP3-206ENST00000558157 FAM167A-AS1Q96KT0 104 aa8.78□□□□□ -1
USP3-206ENST00000558157 SPANXB1Q9NS25 103 aaPredicted RBP8.78□□□□□ -1
USP3-206ENST00000558157 MRPL16Q9NX20 251 aaKnown RBP8.78□□□□□ -1
USP3-206ENST00000558157 USF3Q68DE3 2245 aa8.78□□□□□ -1
USP3-206ENST00000558157 MGST3O14880 152 aa8.78□□□□□ -1
USP3-206ENST00000558157 SPINT2O43291 252 aa8.78□□□□□ -1
USP3-206ENST00000558157 TMEM95Q3KNT9 176 aa8.78□□□□□ -1
USP3-206ENST00000558157 ZNF788Q6ZQV5 615 aa8.78□□□□□ -1
USP3-206ENST00000558157 GTSF1Q8WW33 167 aa8.78□□□□□ -1
USP3-206ENST00000558157 GPR82Q96P67 336 aa8.78□□□□□ -1
USP3-206ENST00000558157 TMUB1Q9BVT8 246 aa8.78□□□□□ -1
USP3-206ENST00000558157 HIGD1BQ9P298 99 aa8.78□□□□□ -1
USP3-206ENST00000558157 SRRM4A7MD48 611 aaKnown RBP8.77□□□□□ -1.01
USP3-206ENST00000558157 SNAI2O43623 268 aa8.77□□□□□ -1.01
USP3-206ENST00000558157 PSPNO60542 156 aa8.77□□□□□ -1.01
USP3-206ENST00000558157 FOXE3Q13461 319 aa8.77□□□□□ -1.01
USP3-206ENST00000558157 Q8TCH9 128 aa8.77□□□□□ -1.01
USP3-206ENST00000558157 RAB37Q96AX2 223 aa8.77□□□□□ -1.01
USP3-206ENST00000558157 LINC00479Q96M42 142 aa8.77□□□□□ -1.01
USP3-206ENST00000558157 ZNF714Q96N38 554 aa8.77□□□□□ -1.01
USP3-206ENST00000558157 S1PR3Q99500 378 aa8.77□□□□□ -1.01
USP3-206ENST00000558157 MLST8Q9BVC4 326 aa8.77□□□□□ -1.01
USP3-206ENST00000558157 SLC25A2Q9BXI2 301 aa8.77□□□□□ -1.01
USP3-206ENST00000558157 HILPDAQ9Y5L2 63 aa8.77□□□□□ -1.01
USP3-206ENST00000558157 OR11H12B2RN74 326 aa8.76□□□□□ -1.01
USP3-206ENST00000558157 H0Y8G0 127 aa8.76□□□□□ -1.01
USP3-206ENST00000558157 CCL21O00585 134 aa8.76□□□□□ -1.01
USP3-206ENST00000558157 P01737 135 aa8.76□□□□□ -1.01
USP3-206ENST00000558157 FAM27E3Q08E93 113 aa8.76□□□□□ -1.01
USP3-206ENST00000558157 TBC1D28Q2M2D7 210 aa8.76□□□□□ -1.01
USP3-206ENST00000558157 GATD1Q8NB37 220 aa8.76□□□□□ -1.01
USP3-206ENST00000558157 STXBP6Q8NFX7 210 aa8.76□□□□□ -1.01
USP3-206ENST00000558157 OR11H1Q8NG94 326 aa8.76□□□□□ -1.01
USP3-206ENST00000558157 OR11H2Q8NH07 326 aa8.76□□□□□ -1.01
USP3-206ENST00000558157 GEMIN7Q9H840 131 aaKnown RBP8.76□□□□□ -1.01
USP3-206ENST00000558157 SLC25A15Q9Y619 301 aa8.76□□□□□ -1.01
USP3-206ENST00000558157 KALRNO60229 2985 aa8.76□□□□□ -1.01
USP3-206ENST00000558157 A0A1B0GW15 77 aa8.76□□□□□ -1.01
USP3-206ENST00000558157 C19orf71A6NCJ1 209 aa8.76□□□□□ -1.01
USP3-206ENST00000558157 IGKV3-15P01624 115 aa8.76□□□□□ -1.01
USP3-206ENST00000558157 LCNL1Q6ZST4 164 aa8.76□□□□□ -1.01
USP3-206ENST00000558157 WDR86Q86TI4 376 aa8.76□□□□□ -1.01
USP3-206ENST00000558157 OBP2BQ9NPH6 170 aa8.76□□□□□ -1.01
USP3-206ENST00000558157 COL6A6A6NMZ7 2263 aa8.76□□□□□ -1.01
USP3-206ENST00000558157 IGSF10Q6WRI0 2623 aa8.76□□□□□ -1.01
USP3-206ENST00000558157 POLEQ07864 2286 aa8.75□□□□□ -1.01
USP3-206ENST00000558157 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.75□□□□□ -1.01
USP3-206ENST00000558157 TSPAN13O95857 204 aa8.75□□□□□ -1.01
USP3-206ENST00000558157 MYCNOSP40205 109 aa8.75□□□□□ -1.01
USP3-206ENST00000558157 OR1L4Q8NGR5 311 aa8.75□□□□□ -1.01
USP3-206ENST00000558157 COQ2Q96H96 371 aa8.75□□□□□ -1.01
USP3-206ENST00000558157 NAA38Q9BRA0 125 aaKnown RBP8.75□□□□□ -1.01
USP3-206ENST00000558157 PAXXQ9BUH6 204 aa8.75□□□□□ -1.01
USP3-206ENST00000558157 JPT1Q9UK76 154 aa8.75□□□□□ -1.01
USP3-206ENST00000558157 TRAV3A0A0B4J244 114 aa8.75□□□□□ -1.01
USP3-206ENST00000558157 NPIPB6E9PJ23 425 aa8.75□□□□□ -1.01
USP3-206ENST00000558157 CECR9P0C854 216 aa8.75□□□□□ -1.01
USP3-206ENST00000558157 LINC00205P59089 165 aa8.75□□□□□ -1.01
USP3-206ENST00000558157 LTC4SQ16873 150 aa8.75□□□□□ -1.01
USP3-206ENST00000558157 C2orf83Q53S99 150 aa8.75□□□□□ -1.01
USP3-206ENST00000558157 ZNF502Q8TBZ5 544 aa8.75□□□□□ -1.01
USP3-206ENST00000558157 CACNG8Q8WXS5 425 aa8.75□□□□□ -1.01
USP3-206ENST00000558157 FMC1Q96HJ9 113 aa8.75□□□□□ -1.01
USP3-206ENST00000558157 MCRIP2Q9BUT9 160 aaKnown RBP8.75□□□□□ -1.01
USP3-206ENST00000558157 INSIG2Q9Y5U4 225 aa8.75□□□□□ -1.01
USP3-206ENST00000558157 PRR14LQ5THK1 2151 aa8.74□□□□□ -1.01
USP3-206ENST00000558157 IGKV1OR2-108A0A075B7D4 117 aa8.74□□□□□ -1.01
USP3-206ENST00000558157 IGHV1-18A0A0C4DH31 117 aa8.74□□□□□ -1.01
USP3-206ENST00000558157 PROP1O75360 226 aa8.74□□□□□ -1.01
USP3-206ENST00000558157 IGLV1-44P01699 117 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms