RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 IGLC3P0DOY3 106 aa10.08□□□□□ -0.8
SHMT2-229ENST00000557348 NPPCP23582 126 aa10.08□□□□□ -0.8
SHMT2-229ENST00000557348 CNTFRP26992 372 aa10.08□□□□□ -0.8
SHMT2-229ENST00000557348 HNRNPA3P51991 378 aaKnown RBP10.08□□□□□ -0.8
SHMT2-229ENST00000557348 PTTG1IPP53801 180 aa10.08□□□□□ -0.8
SHMT2-229ENST00000557348 BPIFB3P59826 476 aa10.08□□□□□ -0.8
SHMT2-229ENST00000557348 PAX8Q06710 450 aa10.08□□□□□ -0.8
SHMT2-229ENST00000557348 LDLRAD2Q5SZI1 272 aa10.08□□□□□ -0.8
SHMT2-229ENST00000557348 C1orf159Q96HA4 380 aa10.08□□□□□ -0.8
SHMT2-229ENST00000557348 KCNS1Q96KK3 526 aa10.08□□□□□ -0.8
SHMT2-229ENST00000557348 OSTCQ9NRP0 149 aa10.08□□□□□ -0.8
SHMT2-229ENST00000557348 TET2Q6N021 2002 aaPredicted RBP10.07□□□□□ -0.8
SHMT2-229ENST00000557348 TCRBV4S1A1TA0A5B7 111 aa10.07□□□□□ -0.8
SHMT2-229ENST00000557348 TEX22C9J3V5 150 aa10.07□□□□□ -0.8
SHMT2-229ENST00000557348 NDUFB4O95168 129 aa10.07□□□□□ -0.8
SHMT2-229ENST00000557348 GATA3P23771 443 aa10.07□□□□□ -0.8
SHMT2-229ENST00000557348 PRB3Q04118 309 aaPredicted RBP10.07□□□□□ -0.8
SHMT2-229ENST00000557348 PQLC2Q6ZP29 291 aa10.07□□□□□ -0.8
SHMT2-229ENST00000557348 SMIM15Q7Z3B0 74 aa10.07□□□□□ -0.8
SHMT2-229ENST00000557348 Q8N6K4 173 aa10.07□□□□□ -0.8
SHMT2-229ENST00000557348 TMEM116Q8NCL8 245 aa10.07□□□□□ -0.8
SHMT2-229ENST00000557348 VN1R17PQ8TDU5 208 aa10.07□□□□□ -0.8
SHMT2-229ENST00000557348 TMEM167BQ9NRX6 74 aa10.07□□□□□ -0.8
SHMT2-229ENST00000557348 TECRQ9NZ01 308 aaKnown RBP10.07□□□□□ -0.8
SHMT2-229ENST00000557348 TP53TG3Q9ULZ0 132 aa10.07□□□□□ -0.8
SHMT2-229ENST00000557348 PAM16Q9Y3D7 125 aa10.07□□□□□ -0.8
SHMT2-229ENST00000557348 FCN1O00602 326 aa10.06□□□□□ -0.8
SHMT2-229ENST00000557348 NPFFO15130 113 aa10.06□□□□□ -0.8
SHMT2-229ENST00000557348 LINC00869P0C866 280 aa10.06□□□□□ -0.8
SHMT2-229ENST00000557348 TMEM11P17152 192 aa10.06□□□□□ -0.8
SHMT2-229ENST00000557348 RBX1P62877 108 aa10.06□□□□□ -0.8
SHMT2-229ENST00000557348 CX3CL1P78423 397 aa10.06□□□□□ -0.8
SHMT2-229ENST00000557348 ZNF562Q6V9R5 426 aa10.06□□□□□ -0.8
SHMT2-229ENST00000557348 TRGV9Q99603 122 aa10.06□□□□□ -0.8
SHMT2-229ENST00000557348 TXN2Q99757 166 aa10.06□□□□□ -0.8
SHMT2-229ENST00000557348 TRAV30A0A087WSZ9 112 aa10.06□□□□□ -0.8
SHMT2-229ENST00000557348 TCF21O43680 179 aa10.06□□□□□ -0.8
SHMT2-229ENST00000557348 NUPR1O60356 82 aa10.06□□□□□ -0.8
SHMT2-229ENST00000557348 FXYD3Q14802 87 aa10.06□□□□□ -0.8
SHMT2-229ENST00000557348 SPATA45Q537H7 98 aa10.06□□□□□ -0.8
SHMT2-229ENST00000557348 COX11Q9Y6N1 276 aa10.06□□□□□ -0.8
SHMT2-229ENST00000557348 IGKV1OR2-108A0A075B7D4 117 aa10.05□□□□□ -0.8
SHMT2-229ENST00000557348 NPIPB5A8MRT5 1133 aa10.05□□□□□ -0.8
SHMT2-229ENST00000557348 SCGB2A1O75556 95 aa10.05□□□□□ -0.8
SHMT2-229ENST00000557348 ARL14EPLP0DKL9 152 aa10.05□□□□□ -0.8
SHMT2-229ENST00000557348 SAA4P35542 130 aa10.05□□□□□ -0.8
SHMT2-229ENST00000557348 LINC00310P59036 64 aa10.05□□□□□ -0.8
SHMT2-229ENST00000557348 GCSAMLQ5JQS6 135 aa10.05□□□□□ -0.8
SHMT2-229ENST00000557348 WIPF2Q8TF74 440 aaPredicted RBP10.05□□□□□ -0.8
SHMT2-229ENST00000557348 NPIPB3Q92617 1050 aa10.05□□□□□ -0.8
SHMT2-229ENST00000557348 CHRDL1Q9BU40 450 aa10.05□□□□□ -0.8
SHMT2-229ENST00000557348 FNDC4Q9H6D8 234 aaPredicted RBP10.05□□□□□ -0.8
SHMT2-229ENST00000557348 IGHV4-61A0A0C4DH41 118 aa10.04□□□□□ -0.8
SHMT2-229ENST00000557348 B4DSR2 109 aa10.04□□□□□ -0.8
SHMT2-229ENST00000557348 HYPMO75409 117 aa10.04□□□□□ -0.8
SHMT2-229ENST00000557348 ZNF324O75467 553 aaPredicted RBP10.04□□□□□ -0.8
SHMT2-229ENST00000557348 HLA-DRB1P01911 266 aa10.04□□□□□ -0.8
SHMT2-229ENST00000557348 DEFA4P12838 97 aa10.04□□□□□ -0.8
SHMT2-229ENST00000557348 Q8N976 141 aa10.04□□□□□ -0.8
SHMT2-229ENST00000557348 OR2T6Q8NHC8 308 aa10.04□□□□□ -0.8
SHMT2-229ENST00000557348 TMEM190Q8WZ59 177 aa10.04□□□□□ -0.8
SHMT2-229ENST00000557348 ARPC1AQ92747 370 aa10.04□□□□□ -0.8
SHMT2-229ENST00000557348 BORCS7Q96B45 105 aa10.04□□□□□ -0.8
SHMT2-229ENST00000557348 NRN1Q9NPD7 142 aa10.04□□□□□ -0.8
SHMT2-229ENST00000557348 THYN1Q9P016 225 aa10.04□□□□□ -0.8
SHMT2-229ENST00000557348 A0A1W2PRD5 423 aa10.03□□□□□ -0.8
SHMT2-229ENST00000557348 A0A1W2PRF3 423 aa10.03□□□□□ -0.8
SHMT2-229ENST00000557348 A0A1W2PRM7 423 aa10.03□□□□□ -0.8
SHMT2-229ENST00000557348 NCBP2LA6PVI3 153 aaKnown RBP10.03□□□□□ -0.8
SHMT2-229ENST00000557348 SNURFLB1AK76 121 aa10.03□□□□□ -0.8
SHMT2-229ENST00000557348 ISLRO14498 428 aa10.03□□□□□ -0.8
SHMT2-229ENST00000557348 COX7A2P2O60397 106 aa10.03□□□□□ -0.8
SHMT2-229ENST00000557348 MSMBP08118 114 aa10.03□□□□□ -0.8
SHMT2-229ENST00000557348 C8orf88P0DMB2 117 aa10.03□□□□□ -0.8
SHMT2-229ENST00000557348 GCHFRP30047 84 aa10.03□□□□□ -0.8
SHMT2-229ENST00000557348 SSBP2P81877 361 aaPredicted RBP10.03□□□□□ -0.8
SHMT2-229ENST00000557348 Q6ZN92 141 aa10.03□□□□□ -0.8
SHMT2-229ENST00000557348 S100A7AQ86SG5 101 aa10.03□□□□□ -0.8
SHMT2-229ENST00000557348 STXBP6Q8NFX7 210 aa10.03□□□□□ -0.8
SHMT2-229ENST00000557348 OCC1Q8TAD7 63 aa10.03□□□□□ -0.8
SHMT2-229ENST00000557348 PERPQ96FX8 193 aa10.03□□□□□ -0.8
SHMT2-229ENST00000557348 SEPSECSQ9HD40 501 aaKnown RBP10.03□□□□□ -0.8
SHMT2-229ENST00000557348 TNFRSF19Q9NS68 423 aa10.03□□□□□ -0.8
SHMT2-229ENST00000557348 FLNCQ14315 2725 aa10.03□□□□□ -0.8
SHMT2-229ENST00000557348 ASH1LQ9NR48 2969 aaKnown RBP10.03□□□□□ -0.8
SHMT2-229ENST00000557348 IGHV1-69DA0A0B4J2H0 117 aa10.02□□□□□ -0.8
SHMT2-229ENST00000557348 CENPVL3A0A0U1RRI6 287 aa10.02□□□□□ -0.8
SHMT2-229ENST00000557348 IGHV1-69P01742 117 aa10.02□□□□□ -0.8
SHMT2-229ENST00000557348 AMTP48728 403 aa10.02□□□□□ -0.8
SHMT2-229ENST00000557348 RHOGP84095 191 aa10.02□□□□□ -0.8
SHMT2-229ENST00000557348 CLEC12BQ2HXU8 276 aa10.02□□□□□ -0.8
SHMT2-229ENST00000557348 RASL11BQ9BPW5 248 aa10.02□□□□□ -0.8
SHMT2-229ENST00000557348 WNT10AQ9GZT5 417 aa10.02□□□□□ -0.8
SHMT2-229ENST00000557348 BEX4Q9NWD9 120 aaPredicted RBP10.02□□□□□ -0.8
SHMT2-229ENST00000557348 TNCP24821 2201 aa10.02□□□□□ -0.8
SHMT2-229ENST00000557348 FLNBO75369 2602 aaKnown RBP10.02□□□□□ -0.81
SHMT2-229ENST00000557348 IGHV4-30-2A0A087WSY4 118 aa10.02□□□□□ -0.81
SHMT2-229ENST00000557348 TRAV9-2A0A087WT02 112 aa10.02□□□□□ -0.81
SHMT2-229ENST00000557348 AMY1AP04745 511 aa10.02□□□□□ -0.81
SHMT2-229ENST00000557348 TSPOP30536 169 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 104.2 ms