RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 PERPQ96FX8 193 aa4.46□□□□□ -1.7
LIMA1-215ENST00000552823 TRBV24-1A0A075B6N3 115 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 IGKV1D-37A0A075B6S9 117 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 TCRBV4S1A1TA0A5B7 111 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 VENTXO95231 258 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 CRISP2P16562 243 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 LGALS7P47929 136 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 CX3CL1P78423 397 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 RPEL1Q2QD12 228 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 OR5R1Q8NH85 324 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 PGLYRP4Q96LB8 373 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 NOL4LQ96MY1 436 aaPredicted RBP4.45□□□□□ -1.7
LIMA1-215ENST00000552823 SEBOXQ9HB31 216 aaPredicted RBP4.45□□□□□ -1.7
LIMA1-215ENST00000552823 ZNF257Q9Y2Q1 563 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 FAM90A9PA6NNJ1 464 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 ZNF253O75346 499 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 HIST2H2BDQ6DRA6 164 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 KDF1Q8NAX2 398 aaPredicted RBP4.45□□□□□ -1.7
LIMA1-215ENST00000552823 DAZAP1Q96EP5 407 aaKnown RBP4.45□□□□□ -1.7
LIMA1-215ENST00000552823 MCRIP2Q9BUT9 160 aaKnown RBP4.45□□□□□ -1.7
LIMA1-215ENST00000552823 PARD6GQ9BYG4 376 aaPredicted RBP4.45□□□□□ -1.7
LIMA1-215ENST00000552823 ZNF331Q9NQX6 463 aaPredicted RBP4.45□□□□□ -1.7
LIMA1-215ENST00000552823 PITPNC1Q9UKF7 332 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 SERF1AO75920 110 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 IGLV1-47P01700 117 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 IGHV3-11P01762 117 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 SMIM6P0DI80 62 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 HLA-DMBP28068 263 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 SRIP30626 198 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 NDPQ00604 133 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 PMCHL1Q16048 86 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 POU2AF1Q16633 256 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 C3orf36Q3SXR2 165 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 FAM209BQ5JX69 171 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 TPTE2P1Q5T6R2 138 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 TOMM20LQ6UXN7 152 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 ZNF600Q6ZNG1 722 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 FAM167A-AS1Q96KT0 104 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 TMEM68Q96MH6 324 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 HSPB9Q9BQS6 159 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 HIGD1AQ9Y241 93 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 DMRT1Q9Y5R6 373 aa4.45□□□□□ -1.7
LIMA1-215ENST00000552823 PEX7O00628 323 aa4.44□□□□□ -1.7
LIMA1-215ENST00000552823 ITGB1BP1O14713 200 aa4.44□□□□□ -1.7
LIMA1-215ENST00000552823 NBR2O15453 112 aa4.44□□□□□ -1.7
LIMA1-215ENST00000552823 GPR183P32249 361 aa4.44□□□□□ -1.7
LIMA1-215ENST00000552823 COMPP49747 757 aaPredicted RBP4.44□□□□□ -1.7
LIMA1-215ENST00000552823 ZNF138P52744 262 aa4.44□□□□□ -1.7
LIMA1-215ENST00000552823 UCNP55089 124 aa4.44□□□□□ -1.7
LIMA1-215ENST00000552823 PAX5Q02548 391 aa4.44□□□□□ -1.7
LIMA1-215ENST00000552823 UNQ5815/PRO19632Q6UWF5 114 aa4.44□□□□□ -1.7
LIMA1-215ENST00000552823 VN1R17PQ8TDU5 208 aa4.44□□□□□ -1.7
LIMA1-215ENST00000552823 TCEAL7Q9BRU2 100 aa4.44□□□□□ -1.7
LIMA1-215ENST00000552823 Q9H3A6 140 aa4.44□□□□□ -1.7
LIMA1-215ENST00000552823 VPS13CQ709C8 3753 aa4.44□□□□□ -1.7
LIMA1-215ENST00000552823 CHD6Q8TD26 2715 aa4.44□□□□□ -1.7
LIMA1-215ENST00000552823 SERTM2A0A1B0GWG4 89 aa4.44□□□□□ -1.7
LIMA1-215ENST00000552823 TNFRSF13BO14836 293 aaPredicted RBP4.44□□□□□ -1.7
LIMA1-215ENST00000552823 NDUFB8O95169 186 aa4.44□□□□□ -1.7
LIMA1-215ENST00000552823 RPL11P62913 178 aaKnown RBP4.44□□□□□ -1.7
LIMA1-215ENST00000552823 S100A12P80511 92 aa4.44□□□□□ -1.7
LIMA1-215ENST00000552823 NUDT10Q8NFP7 164 aa4.44□□□□□ -1.7
LIMA1-215ENST00000552823 NUDT11Q96G61 164 aa4.44□□□□□ -1.7
LIMA1-215ENST00000552823 DUX5Q96PT3 197 aa4.44□□□□□ -1.7
LIMA1-215ENST00000552823 NEU1Q99519 415 aa4.44□□□□□ -1.7
LIMA1-215ENST00000552823 IL36BQ9NZH7 164 aa4.44□□□□□ -1.7
LIMA1-215ENST00000552823 PAM16Q9Y3D7 125 aa4.44□□□□□ -1.7
LIMA1-215ENST00000552823 FLNBO75369 2602 aaKnown RBP4.44□□□□□ -1.7
LIMA1-215ENST00000552823 SPRY2O43597 315 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 PPIFP30405 207 aaKnown RBP4.43□□□□□ -1.7
LIMA1-215ENST00000552823 AMTP48728 403 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 FXYD7P58549 80 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 DEFA6Q01524 100 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 MRGPRG-AS1Q2M3A8 158 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 TDRG1Q3Y452 100 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 LINC00322Q6ZN03 302 aaPredicted RBP4.43□□□□□ -1.7
LIMA1-215ENST00000552823 ZNF705AQ6ZN79 300 aaPredicted RBP4.43□□□□□ -1.7
LIMA1-215ENST00000552823 Q8TAT8 98 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 DEFB104AQ8WTQ1 72 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 WFDC12Q8WWY7 111 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 CACNG8Q8WXS5 425 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 TMEM18Q96B42 140 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 BTF3L4Q96K17 158 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 CLEC5AQ9NY25 188 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 KAAG1Q9UBP8 84 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 KLF2Q9Y5W3 355 aaPredicted RBP4.43□□□□□ -1.7
LIMA1-215ENST00000552823 F11RQ9Y624 299 aaKnown RBP4.43□□□□□ -1.7
LIMA1-215ENST00000552823 TEX15Q9BXT5 2789 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 HELZ2Q9BYK8 2649 aaKnown RBP4.43□□□□□ -1.7
LIMA1-215ENST00000552823 GGCTO75223 188 aaKnown RBP4.43□□□□□ -1.7
LIMA1-215ENST00000552823 NDUFS6O75380 124 aaKnown RBP4.43□□□□□ -1.7
LIMA1-215ENST00000552823 SRP14P37108 136 aaKnown RBP4.43□□□□□ -1.7
LIMA1-215ENST00000552823 ATP5J2P56134 94 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 DEFB1P60022 68 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 DMRTA1Q5VZB9 504 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 RNASEKQ6P5S7 137 aaKnown RBP4.43□□□□□ -1.7
LIMA1-215ENST00000552823 C1orf122Q6ZSJ8 110 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 ZNF329Q86UD4 541 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 TMEM183AQ8IXX5 376 aa4.43□□□□□ -1.7
LIMA1-215ENST00000552823 TEX45Q8NA69 505 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms