RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 SCGB3A1Q96QR1 104 aa4.21□□□□□ -1.74
VPS29-210ENST00000552130 RPRMQ9NS64 109 aa4.21□□□□□ -1.74
VPS29-210ENST00000552130 ANKRD31Q8N7Z5 1873 aa4.21□□□□□ -1.74
VPS29-210ENST00000552130 SBF1O95248 1867 aa4.2□□□□□ -1.74
VPS29-210ENST00000552130 MAST2Q6P0Q8 1798 aa4.2□□□□□ -1.74
VPS29-210ENST00000552130 TRBV24-1A0A075B6N3 115 aa4.2□□□□□ -1.74
VPS29-210ENST00000552130 H3BMM0 161 aa4.2□□□□□ -1.74
VPS29-210ENST00000552130 M0R129 80 aa4.2□□□□□ -1.74
VPS29-210ENST00000552130 TNFP01375 233 aa4.2□□□□□ -1.74
VPS29-210ENST00000552130 IGKV3-20P01619 116 aa4.2□□□□□ -1.74
VPS29-210ENST00000552130 MT-ND6P03923 174 aa4.2□□□□□ -1.74
VPS29-210ENST00000552130 CCL5P13501 91 aa4.2□□□□□ -1.74
VPS29-210ENST00000552130 C7orf65Q6ZTY9 151 aa4.2□□□□□ -1.74
VPS29-210ENST00000552130 AAED1Q7RTV5 226 aa4.2□□□□□ -1.74
VPS29-210ENST00000552130 MIR7-3HGQ8N6C7 128 aa4.2□□□□□ -1.74
VPS29-210ENST00000552130 C5orf17Q8NAS9 161 aa4.2□□□□□ -1.74
VPS29-210ENST00000552130 UBE2WQ96B02 151 aa4.2□□□□□ -1.74
VPS29-210ENST00000552130 DOCK8Q8NF50 2099 aa4.2□□□□□ -1.74
VPS29-210ENST00000552130 YEATS2Q9ULM3 1422 aa4.2□□□□□ -1.74
VPS29-210ENST00000552130 KDM5CP41229 1560 aa4.19□□□□□ -1.74
VPS29-210ENST00000552130 ATG2AQ2TAZ0 1938 aa4.19□□□□□ -1.74
VPS29-210ENST00000552130 A2ML1A8K2U0 1454 aa4.19□□□□□ -1.74
VPS29-210ENST00000552130 IGKV6D-41A0A0C4DH26 115 aa4.19□□□□□ -1.74
VPS29-210ENST00000552130 C17orf51A8MQB3 221 aa4.19□□□□□ -1.74
VPS29-210ENST00000552130 GTSCR1Q86UQ5 136 aa4.19□□□□□ -1.74
VPS29-210ENST00000552130 KCNRGQ8N5I3 272 aa4.19□□□□□ -1.74
VPS29-210ENST00000552130 PLPP5Q8NEB5 264 aa4.19□□□□□ -1.74
VPS29-210ENST00000552130 BPIFB6Q8NFQ5 453 aa4.19□□□□□ -1.74
VPS29-210ENST00000552130 OR4B1Q8NGF8 309 aa4.19□□□□□ -1.74
VPS29-210ENST00000552130 CLDND2Q8NHS1 167 aa4.19□□□□□ -1.74
VPS29-210ENST00000552130 TYMSOSQ8TAI1 123 aa4.19□□□□□ -1.74
VPS29-210ENST00000552130 C16orf95Q9H693 158 aa4.19□□□□□ -1.74
VPS29-210ENST00000552130 ZNF355PQ9NSJ1 428 aa4.19□□□□□ -1.74
VPS29-210ENST00000552130 OR5V1Q9UGF6 321 aa4.19□□□□□ -1.74
VPS29-210ENST00000552130 CABIN1Q9Y6J0 2220 aa4.19□□□□□ -1.74
VPS29-210ENST00000552130 RGS12O14924 1447 aa4.19□□□□□ -1.74
VPS29-210ENST00000552130 BAZ1BQ9UIG0 1483 aaKnown RBP4.18□□□□□ -1.74
VPS29-210ENST00000552130 GTF3C1Q12789 2109 aa4.18□□□□□ -1.74
VPS29-210ENST00000552130 POLEQ07864 2286 aa4.18□□□□□ -1.74
VPS29-210ENST00000552130 IGKV3D-20A0A0C4DH25 116 aa4.18□□□□□ -1.74
VPS29-210ENST00000552130 PNMA8CA0A1B0GUJ8 204 aa4.18□□□□□ -1.74
VPS29-210ENST00000552130 GRIFINA4D1Z8 144 aa4.18□□□□□ -1.74
VPS29-210ENST00000552130 C3orf84H3BNL1 204 aa4.18□□□□□ -1.74
VPS29-210ENST00000552130 RER1O15258 196 aa4.18□□□□□ -1.74
VPS29-210ENST00000552130 KLF7O75840 302 aaPredicted RBP4.18□□□□□ -1.74
VPS29-210ENST00000552130 LY6HO94772 140 aa4.18□□□□□ -1.74
VPS29-210ENST00000552130 HBDP02042 147 aa4.18□□□□□ -1.74
VPS29-210ENST00000552130 CD2P06729 351 aa4.18□□□□□ -1.74
VPS29-210ENST00000552130 TRGC1P0CF51 173 aa4.18□□□□□ -1.74
VPS29-210ENST00000552130 SNRPD3P62318 126 aaKnown RBP4.18□□□□□ -1.74
VPS29-210ENST00000552130 ATOH7Q8N100 152 aa4.18□□□□□ -1.74
VPS29-210ENST00000552130 SIGLECL1Q8N7X8 197 aa4.18□□□□□ -1.74
VPS29-210ENST00000552130 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.18□□□□□ -1.74
VPS29-210ENST00000552130 MCEEQ96PE7 176 aa4.18□□□□□ -1.74
VPS29-210ENST00000552130 GINS4Q9BRT9 223 aa4.18□□□□□ -1.74
VPS29-210ENST00000552130 LINC00574Q9H8X3 128 aa4.18□□□□□ -1.74
VPS29-210ENST00000552130 TRAPPC1Q9Y5R8 145 aa4.18□□□□□ -1.74
VPS29-210ENST00000552130 ICOSQ9Y6W8 199 aa4.18□□□□□ -1.74
VPS29-210ENST00000552130 ECM29Q5VYK3 1845 aa4.18□□□□□ -1.74
VPS29-210ENST00000552130 MED1Q15648 1581 aaPredicted RBP4.18□□□□□ -1.74
VPS29-210ENST00000552130 AKAP12Q02952 1782 aa4.17□□□□□ -1.74
VPS29-210ENST00000552130 MYH9P35579 1960 aaKnown RBP4.17□□□□□ -1.74
VPS29-210ENST00000552130 TRAV12-2A0A075B6T6 113 aa4.17□□□□□ -1.74
VPS29-210ENST00000552130 A0A0J9YW62 118 aa4.17□□□□□ -1.74
VPS29-210ENST00000552130 FAM168BA1KXE4 195 aa4.17□□□□□ -1.74
VPS29-210ENST00000552130 C19orf71A6NCJ1 209 aa4.17□□□□□ -1.74
VPS29-210ENST00000552130 PHOX2AO14813 284 aa4.17□□□□□ -1.74
VPS29-210ENST00000552130 ZNF432O94892 652 aa4.17□□□□□ -1.74
VPS29-210ENST00000552130 NPYP01303 97 aa4.17□□□□□ -1.74
VPS29-210ENST00000552130 SPINK8P0C7L1 97 aa4.17□□□□□ -1.74
VPS29-210ENST00000552130 MIAQ16674 131 aa4.17□□□□□ -1.74
VPS29-210ENST00000552130 ZC2HC1BQ5TFG8 222 aa4.17□□□□□ -1.74
VPS29-210ENST00000552130 NOXRED1Q6NXP6 359 aa4.17□□□□□ -1.74
VPS29-210ENST00000552130 SOSTDC1Q6X4U4 206 aa4.17□□□□□ -1.74
VPS29-210ENST00000552130 DIRC1Q969H9 104 aa4.17□□□□□ -1.74
VPS29-210ENST00000552130 DNAJC15Q9Y5T4 150 aa4.17□□□□□ -1.74
VPS29-210ENST00000552130 U3KQK5 164 aa4.17□□□□□ -1.74
VPS29-210ENST00000552130 KIAA1107Q9UPP5 1409 aa4.17□□□□□ -1.74
VPS29-210ENST00000552130 PLXNB1O43157 2135 aa4.16□□□□□ -1.74
VPS29-210ENST00000552130 A0A087WYN8 130 aa4.16□□□□□ -1.74
VPS29-210ENST00000552130 A0A0J9YWU9 116 aa4.16□□□□□ -1.74
VPS29-210ENST00000552130 SYNGR2O43760 224 aa4.16□□□□□ -1.74
VPS29-210ENST00000552130 ZNF883P0CG24 379 aa4.16□□□□□ -1.74
VPS29-210ENST00000552130 TTC9CQ8N5M4 171 aa4.16□□□□□ -1.74
VPS29-210ENST00000552130 C3orf56Q8N813 242 aa4.16□□□□□ -1.74
VPS29-210ENST00000552130 COPS9Q8WXC6 57 aa4.16□□□□□ -1.74
VPS29-210ENST00000552130 NAA60Q9H7X0 242 aa4.16□□□□□ -1.74
VPS29-210ENST00000552130 AHDC1Q5TGY3 1603 aaPredicted RBP4.16□□□□□ -1.74
VPS29-210ENST00000552130 MED14O60244 1454 aa4.16□□□□□ -1.74
VPS29-210ENST00000552130 CCDC18Q5T9S5 1454 aa4.16□□□□□ -1.74
VPS29-210ENST00000552130 SIPA1L1O43166 1804 aa4.16□□□□□ -1.74
VPS29-210ENST00000552130 OBSL1O75147 1896 aa4.15□□□□□ -1.74
VPS29-210ENST00000552130 N4BP2Q86UW6 1770 aaPredicted RBP4.15□□□□□ -1.74
VPS29-210ENST00000552130 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.15□□□□□ -1.75
VPS29-210ENST00000552130 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.15□□□□□ -1.75
VPS29-210ENST00000552130 NOVP48745 357 aa4.15□□□□□ -1.75
VPS29-210ENST00000552130 LSM3P62310 102 aaKnown RBP4.15□□□□□ -1.75
VPS29-210ENST00000552130 CLLU1Q5K131 121 aa4.15□□□□□ -1.75
VPS29-210ENST00000552130 LINC01545Q5VT33 79 aa4.15□□□□□ -1.75
VPS29-210ENST00000552130 MRPL54Q6P161 138 aaKnown RBP4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms