RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 HOXA4Q00056 320 aaPredicted RBP9.03□□□□□ -0.96
CDH3-203ENST00000542274 LIAT1Q6ZQX7 453 aa9.03□□□□□ -0.96
CDH3-203ENST00000542274 NFE4Q86UQ8 179 aa9.03□□□□□ -0.96
CDH3-203ENST00000542274 ZNRF2Q8NHG8 242 aa9.03□□□□□ -0.96
CDH3-203ENST00000542274 SCGB1C1Q8TD33 95 aa9.03□□□□□ -0.96
CDH3-203ENST00000542274 OR2W1Q9Y3N9 320 aa9.03□□□□□ -0.96
CDH3-203ENST00000542274 INTS1Q8N201 2190 aaKnown RBP9.03□□□□□ -0.96
CDH3-203ENST00000542274 ADGRG4Q8IZF6 3080 aa9.03□□□□□ -0.96
CDH3-203ENST00000542274 PIEZO1Q92508 2521 aa9.03□□□□□ -0.96
CDH3-203ENST00000542274 ZZEF1O43149 2961 aa9.03□□□□□ -0.96
CDH3-203ENST00000542274 ESPL1Q14674 2120 aa9.03□□□□□ -0.96
CDH3-203ENST00000542274 CHST1O43916 411 aa9.03□□□□□ -0.96
CDH3-203ENST00000542274 BCL3P20749 454 aa9.03□□□□□ -0.96
CDH3-203ENST00000542274 MALP21145 153 aa9.03□□□□□ -0.96
CDH3-203ENST00000542274 FXYD4P59646 89 aa9.03□□□□□ -0.96
CDH3-203ENST00000542274 LY6DQ14210 128 aa9.03□□□□□ -0.96
CDH3-203ENST00000542274 TMEM136Q6ZRR5 245 aa9.03□□□□□ -0.96
CDH3-203ENST00000542274 OR2T6Q8NHC8 308 aa9.03□□□□□ -0.96
CDH3-203ENST00000542274 ATP6V0E2Q8NHE4 81 aa9.03□□□□□ -0.96
CDH3-203ENST00000542274 PRDM14Q9GZV8 571 aa9.03□□□□□ -0.96
CDH3-203ENST00000542274 C21orf62Q9NYP8 219 aa9.03□□□□□ -0.96
CDH3-203ENST00000542274 TLN1Q9Y490 2541 aaKnown RBP9.03□□□□□ -0.96
CDH3-203ENST00000542274 LRRC30A6NM36 301 aa9.03□□□□□ -0.96
CDH3-203ENST00000542274 SP6Q3SY56 376 aa9.03□□□□□ -0.96
CDH3-203ENST00000542274 SPACA3Q8IXA5 215 aa9.03□□□□□ -0.96
CDH3-203ENST00000542274 RPEQ96AT9 228 aa9.03□□□□□ -0.96
CDH3-203ENST00000542274 RASL11BQ9BPW5 248 aa9.03□□□□□ -0.96
CDH3-203ENST00000542274 TMEM191AQ9H0A3 160 aa9.03□□□□□ -0.96
CDH3-203ENST00000542274 RNASE7Q9H1E1 156 aaKnown RBP9.03□□□□□ -0.96
CDH3-203ENST00000542274 LYZL6O75951 148 aa9.02□□□□□ -0.97
CDH3-203ENST00000542274 MDP1Q86V88 176 aa9.02□□□□□ -0.97
CDH3-203ENST00000542274 OR4C13Q8NGP0 309 aa9.02□□□□□ -0.97
CDH3-203ENST00000542274 GPHA2Q96T91 129 aa9.02□□□□□ -0.97
CDH3-203ENST00000542274 VSIRQ9H7M9 311 aa9.02□□□□□ -0.97
CDH3-203ENST00000542274 ZGRF1Q86YA3 2104 aa9.02□□□□□ -0.97
CDH3-203ENST00000542274 TRBV9A0A0B4J1U6 114 aa9.02□□□□□ -0.97
CDH3-203ENST00000542274 TRAV4A0A0B4J268 109 aa9.02□□□□□ -0.97
CDH3-203ENST00000542274 MDFIC2A0A1B0GVS7 189 aa9.02□□□□□ -0.97
CDH3-203ENST00000542274 OR2H2O95918 312 aa9.02□□□□□ -0.97
CDH3-203ENST00000542274 DLX6P56179 175 aa9.02□□□□□ -0.97
CDH3-203ENST00000542274 TNFAIP6P98066 277 aaPredicted RBP9.02□□□□□ -0.97
CDH3-203ENST00000542274 SLC35E4Q6ICL7 350 aa9.02□□□□□ -0.97
CDH3-203ENST00000542274 AMTNQ6UX39 209 aa9.02□□□□□ -0.97
CDH3-203ENST00000542274 GNB1LQ9BYB4 327 aa9.02□□□□□ -0.97
CDH3-203ENST00000542274 PRNDQ9UKY0 176 aa9.02□□□□□ -0.97
CDH3-203ENST00000542274 OOSP1A8MZH6 123 aa9.01□□□□□ -0.97
CDH3-203ENST00000542274 CRXO43186 299 aaPredicted RBP9.01□□□□□ -0.97
CDH3-203ENST00000542274 SNCGO76070 127 aa9.01□□□□□ -0.97
CDH3-203ENST00000542274 CRYGDP07320 174 aa9.01□□□□□ -0.97
CDH3-203ENST00000542274 PRDX2P32119 198 aa9.01□□□□□ -0.97
CDH3-203ENST00000542274 DYNLT3P51808 116 aa9.01□□□□□ -0.97
CDH3-203ENST00000542274 EDDM3AQ14507 147 aa9.01□□□□□ -0.97
CDH3-203ENST00000542274 TRAV9-1A0A075B6T8 112 aa9.01□□□□□ -0.97
CDH3-203ENST00000542274 ZNF561-AS1K7EIQ3 104 aa9.01□□□□□ -0.97
CDH3-203ENST00000542274 PSMB3P49720 205 aa9.01□□□□□ -0.97
CDH3-203ENST00000542274 RPS28P62857 69 aaKnown RBP9.01□□□□□ -0.97
CDH3-203ENST00000542274 PHLDA2Q53GA4 152 aa9.01□□□□□ -0.97
CDH3-203ENST00000542274 MRPL32Q9BYC8 188 aaKnown RBP9.01□□□□□ -0.97
CDH3-203ENST00000542274 ZNF442Q9H7R0 627 aa9.01□□□□□ -0.97
CDH3-203ENST00000542274 RAXQ9Y2V3 346 aa9.01□□□□□ -0.97
CDH3-203ENST00000542274 ATP5LO75964 103 aa9□□□□□ -0.97
CDH3-203ENST00000542274 CSN1S1P47710 185 aa9□□□□□ -0.97
CDH3-203ENST00000542274 SLC38A11Q08AI6 406 aa9□□□□□ -0.97
CDH3-203ENST00000542274 TMEM219Q86XT9 240 aa9□□□□□ -0.97
CDH3-203ENST00000542274 GAPTQ8N292 157 aa9□□□□□ -0.97
CDH3-203ENST00000542274 KALRNO60229 2985 aa9□□□□□ -0.97
CDH3-203ENST00000542274 ATRXP46100 2492 aa9□□□□□ -0.97
CDH3-203ENST00000542274 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9□□□□□ -0.97
CDH3-203ENST00000542274 MT-ND6P03923 174 aa9□□□□□ -0.97
CDH3-203ENST00000542274 HERVK_113P63121 156 aa9□□□□□ -0.97
CDH3-203ENST00000542274 NAA60Q9H7X0 242 aa9□□□□□ -0.97
CDH3-203ENST00000542274 ZNF71Q9NQZ8 489 aaPredicted RBP9□□□□□ -0.97
CDH3-203ENST00000542274 C1RLQ9NZP8 487 aa9□□□□□ -0.97
CDH3-203ENST00000542274 PCNX1Q96RV3 2341 aa9□□□□□ -0.97
CDH3-203ENST00000542274 SPTA1P02549 2419 aa8.99□□□□□ -0.97
CDH3-203ENST00000542274 BMPR1BO00238 502 aa8.99□□□□□ -0.97
CDH3-203ENST00000542274 CST7O76096 145 aa8.99□□□□□ -0.97
CDH3-203ENST00000542274 CA6P23280 308 aa8.99□□□□□ -0.97
CDH3-203ENST00000542274 CX3CL1P78423 397 aa8.99□□□□□ -0.97
CDH3-203ENST00000542274 TEPPQ6URK8 271 aa8.99□□□□□ -0.97
CDH3-203ENST00000542274 CNEP1R1Q8N9A8 125 aa8.99□□□□□ -0.97
CDH3-203ENST00000542274 OR10G8Q8NGN5 311 aa8.99□□□□□ -0.97
CDH3-203ENST00000542274 SSBP3Q9BWW4 388 aaPredicted RBP8.99□□□□□ -0.97
CDH3-203ENST00000542274 YTHDF2Q9Y5A9 579 aaKnown RBP8.99□□□□□ -0.97
CDH3-203ENST00000542274 PDCD6O75340 191 aa8.99□□□□□ -0.97
CDH3-203ENST00000542274 NDUFA7O95182 113 aa8.99□□□□□ -0.97
CDH3-203ENST00000542274 IGHV1-2P23083 117 aa8.99□□□□□ -0.97
CDH3-203ENST00000542274 HCFC1P51610 2035 aa8.99□□□□□ -0.97
CDH3-203ENST00000542274 RPS16P62249 146 aaKnown RBP8.99□□□□□ -0.97
CDH3-203ENST00000542274 FOXF2Q12947 444 aa8.99□□□□□ -0.97
CDH3-203ENST00000542274 CHEK1O14757 476 aa8.98□□□□□ -0.97
CDH3-203ENST00000542274 SS18L1O75177 396 aaPredicted RBP8.98□□□□□ -0.97
CDH3-203ENST00000542274 PGLYRP1O75594 196 aaPredicted RBP8.98□□□□□ -0.97
CDH3-203ENST00000542274 HES1Q14469 280 aa8.98□□□□□ -0.97
CDH3-203ENST00000542274 Q6Q795 121 aa8.98□□□□□ -0.97
CDH3-203ENST00000542274 ZNF286AQ9HBT8 521 aa8.98□□□□□ -0.97
CDH3-203ENST00000542274 IL36BQ9NZH7 164 aa8.98□□□□□ -0.97
CDH3-203ENST00000542274 K7ERJ3 54 aa8.98□□□□□ -0.97
CDH3-203ENST00000542274 FGF6P10767 208 aa8.98□□□□□ -0.97
CDH3-203ENST00000542274 Q6ZS92 163 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms