RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 RAB1BQ9H0U4 201 aa16.88■□□□□ 0.29
VPS28-205ENST00000526204 GSX1Q9H4S2 264 aaPredicted RBP16.88■□□□□ 0.29
VPS28-205ENST00000526204 RPP21Q9H633 154 aaKnown RBP16.88■□□□□ 0.29
VPS28-205ENST00000526204 OTORQ9NRC9 128 aa16.88■□□□□ 0.29
VPS28-205ENST00000526204 A8MWL6 223 aa16.88■□□□□ 0.29
VPS28-205ENST00000526204 TIMM23O14925 209 aa16.88■□□□□ 0.29
VPS28-205ENST00000526204 ASPHD1Q5U4P2 390 aa16.88■□□□□ 0.29
VPS28-205ENST00000526204 C18orf32Q8TCD1 76 aa16.88■□□□□ 0.29
VPS28-205ENST00000526204 SLC25A39Q9BZJ4 359 aaPredicted RBP16.88■□□□□ 0.29
VPS28-205ENST00000526204 CCL21O00585 134 aa16.87■□□□□ 0.29
VPS28-205ENST00000526204 OR2J3O76001 311 aa16.87■□□□□ 0.29
VPS28-205ENST00000526204 GRNP28799 593 aaKnown RBP16.87■□□□□ 0.29
VPS28-205ENST00000526204 NHLH1Q02575 133 aa16.87■□□□□ 0.29
VPS28-205ENST00000526204 MRPL52Q86TS9 123 aaKnown RBP16.87■□□□□ 0.29
VPS28-205ENST00000526204 OR11H6Q8NGC7 330 aa16.87■□□□□ 0.29
VPS28-205ENST00000526204 TIMD4Q96H15 378 aa16.87■□□□□ 0.29
VPS28-205ENST00000526204 MIEN1Q9BRT3 115 aa16.87■□□□□ 0.29
VPS28-205ENST00000526204 DPM3Q9P2X0 92 aa16.87■□□□□ 0.29
VPS28-205ENST00000526204 RNF24Q9Y225 148 aa16.87■□□□□ 0.29
VPS28-205ENST00000526204 SOX21Q9Y651 276 aaPredicted RBP16.87■□□□□ 0.29
VPS28-205ENST00000526204 PMCHP20382 165 aa16.87■□□□□ 0.29
VPS28-205ENST00000526204 CEACAM3P40198 252 aa16.87■□□□□ 0.29
VPS28-205ENST00000526204 KLF5Q13887 457 aaPredicted RBP16.87■□□□□ 0.29
VPS28-205ENST00000526204 MMDQ15546 238 aa16.87■□□□□ 0.29
VPS28-205ENST00000526204 SGK494Q96LW2 274 aa16.87■□□□□ 0.29
VPS28-205ENST00000526204 SNHG12Q9BXW3 62 aa16.87■□□□□ 0.29
VPS28-205ENST00000526204 MALRD1Q5VYJ5 2156 aa16.86■□□□□ 0.29
VPS28-205ENST00000526204 DIRC3C9JPN6 131 aa16.86■□□□□ 0.29
VPS28-205ENST00000526204 EREGO14944 169 aa16.86■□□□□ 0.29
VPS28-205ENST00000526204 P01737 135 aa16.86■□□□□ 0.29
VPS28-205ENST00000526204 TDRG1Q3Y452 100 aa16.86■□□□□ 0.29
VPS28-205ENST00000526204 GDF5OSQ5U4N7 250 aa16.86■□□□□ 0.29
VPS28-205ENST00000526204 OR4B1Q8NGF8 309 aa16.86■□□□□ 0.29
VPS28-205ENST00000526204 A0A1B0GXF2 115 aa16.85■□□□□ 0.29
VPS28-205ENST00000526204 C19orf71A6NCJ1 209 aa16.85■□□□□ 0.29
VPS28-205ENST00000526204 DAZAP1Q96EP5 407 aaKnown RBP16.85■□□□□ 0.29
VPS28-205ENST00000526204 PLXNB1O43157 2135 aa16.85■□□□□ 0.29
VPS28-205ENST00000526204 IGKV1-17P01599 117 aa16.85■□□□□ 0.29
VPS28-205ENST00000526204 RAB4AP20338 218 aa16.85■□□□□ 0.29
VPS28-205ENST00000526204 GFRA4Q9GZZ7 299 aa16.85■□□□□ 0.29
VPS28-205ENST00000526204 PAM16Q9Y3D7 125 aa16.85■□□□□ 0.29
VPS28-205ENST00000526204 KALRNO60229 2985 aa16.85■□□□□ 0.29
VPS28-205ENST00000526204 NBR2O15453 112 aa16.84■□□□□ 0.29
VPS28-205ENST00000526204 FAM231BA6NCW3 169 aa16.84■□□□□ 0.29
VPS28-205ENST00000526204 K7EIM0 57 aa16.84■□□□□ 0.29
VPS28-205ENST00000526204 M0R1W7 72 aa16.84■□□□□ 0.29
VPS28-205ENST00000526204 RNF224P0DH78 156 aa16.84■□□□□ 0.29
VPS28-205ENST00000526204 HBBP68871 147 aa16.84■□□□□ 0.29
VPS28-205ENST00000526204 ZNF705AQ6ZN79 300 aaPredicted RBP16.84■□□□□ 0.29
VPS28-205ENST00000526204 Q8N976 141 aa16.84■□□□□ 0.29
VPS28-205ENST00000526204 NPBQ8NG41 125 aa16.84■□□□□ 0.29
VPS28-205ENST00000526204 ALKBH7Q9BT30 221 aaPredicted RBP16.84■□□□□ 0.29
VPS28-205ENST00000526204 MSRB2Q9Y3D2 182 aa16.84■□□□□ 0.29
VPS28-205ENST00000526204 RNF114Q9Y508 228 aa16.84■□□□□ 0.29
VPS28-205ENST00000526204 POLEQ07864 2286 aa16.83■□□□□ 0.29
VPS28-205ENST00000526204 H3BTX0 84 aa16.83■□□□□ 0.28
VPS28-205ENST00000526204 M0QZK8 103 aa16.83■□□□□ 0.28
VPS28-205ENST00000526204 CAMPP49913 170 aa16.83■□□□□ 0.28
VPS28-205ENST00000526204 UCNP55089 124 aa16.83■□□□□ 0.28
VPS28-205ENST00000526204 NUTF2P61970 127 aaKnown RBP16.83■□□□□ 0.28
VPS28-205ENST00000526204 LDLRAD2Q5SZI1 272 aa16.83■□□□□ 0.28
VPS28-205ENST00000526204 BORCS7Q96B45 105 aa16.83■□□□□ 0.28
VPS28-205ENST00000526204 VWC2LB2RUY7 222 aa16.82■□□□□ 0.28
VPS28-205ENST00000526204 NDUFA3O95167 84 aa16.82■□□□□ 0.28
VPS28-205ENST00000526204 ARF6P62330 175 aa16.82■□□□□ 0.28
VPS28-205ENST00000526204 LINC00322Q6ZN03 302 aaPredicted RBP16.82■□□□□ 0.28
VPS28-205ENST00000526204 NIT1Q86X76 327 aa16.82■□□□□ 0.28
VPS28-205ENST00000526204 BPIFA4PQ86YQ2 179 aa16.82■□□□□ 0.28
VPS28-205ENST00000526204 SHANK2-AS3Q9BTD1 123 aa16.82■□□□□ 0.28
VPS28-205ENST00000526204 TRBV6-1A0A0K0K1D8 114 aa16.82■□□□□ 0.28
VPS28-205ENST00000526204 Q86TA4 180 aa16.82■□□□□ 0.28
VPS28-205ENST00000526204 CFHR4Q92496 578 aa16.82■□□□□ 0.28
VPS28-205ENST00000526204 FAM162BQ5T6X4 162 aa16.81■□□□□ 0.28
VPS28-205ENST00000526204 TCF24Q7RTU0 167 aa16.81■□□□□ 0.28
VPS28-205ENST00000526204 HILPDAQ9Y5L2 63 aa16.81■□□□□ 0.28
VPS28-205ENST00000526204 LOC105371242A0A075B767 164 aa16.81■□□□□ 0.28
VPS28-205ENST00000526204 NPIPB6E9PJ23 425 aa16.81■□□□□ 0.28
VPS28-205ENST00000526204 HOXB4P17483 251 aaPredicted RBP16.81■□□□□ 0.28
VPS28-205ENST00000526204 RBPMS2Q6ZRY4 209 aaKnown RBP16.81■□□□□ 0.28
VPS28-205ENST00000526204 S100A7AQ86SG5 101 aa16.81■□□□□ 0.28
VPS28-205ENST00000526204 FAM19A2Q8N3H0 131 aa16.81■□□□□ 0.28
VPS28-205ENST00000526204 OR4F17Q8NGA8 305 aa16.81■□□□□ 0.28
VPS28-205ENST00000526204 NEU4Q8WWR8 484 aaPredicted RBP16.81■□□□□ 0.28
VPS28-205ENST00000526204 SSBP4Q9BWG4 385 aaPredicted RBP16.81■□□□□ 0.28
VPS28-205ENST00000526204 HSBP1O75506 76 aa16.8■□□□□ 0.28
VPS28-205ENST00000526204 C3orf79P0CE67 100 aa16.8■□□□□ 0.28
VPS28-205ENST00000526204 NTF3P20783 257 aa16.8■□□□□ 0.28
VPS28-205ENST00000526204 PRTN3P24158 256 aa16.8■□□□□ 0.28
VPS28-205ENST00000526204 KLRB1Q12918 225 aa16.8■□□□□ 0.28
VPS28-205ENST00000526204 LYPD1Q8N2G4 141 aa16.8■□□□□ 0.28
VPS28-205ENST00000526204 OR2D3Q8NGH3 330 aa16.8■□□□□ 0.28
VPS28-205ENST00000526204 TRBV19A0A075B6N1 114 aa16.79■□□□□ 0.28
VPS28-205ENST00000526204 H3BRN7 92 aa16.79■□□□□ 0.28
VPS28-205ENST00000526204 GTSF1Q8WW33 167 aa16.79■□□□□ 0.28
VPS28-205ENST00000526204 TRAV30A0A087WSZ9 112 aa16.79■□□□□ 0.28
VPS28-205ENST00000526204 ODF3BA8MYP8 253 aa16.79■□□□□ 0.28
VPS28-205ENST00000526204 GPR6P46095 362 aaPredicted RBP16.79■□□□□ 0.28
VPS28-205ENST00000526204 GOLT1AQ6ZVE7 132 aa16.79■□□□□ 0.28
VPS28-205ENST00000526204 EXOC3-AS1Q8N2X6 119 aa16.79■□□□□ 0.28
VPS28-205ENST00000526204 LY6HO94772 140 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms