RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 DLEU1O43261 78 aa3.34□□□□□ -1.87
USP47-204ENST00000525078 NDUFB3O43676 98 aa3.34□□□□□ -1.87
USP47-204ENST00000525078 MT-ND4LP03901 98 aa3.34□□□□□ -1.87
USP47-204ENST00000525078 ZNF22P17026 224 aaPredicted RBP3.34□□□□□ -1.87
USP47-204ENST00000525078 NFYAP23511 347 aaPredicted RBP3.34□□□□□ -1.87
USP47-204ENST00000525078 RNASE4P34096 147 aaKnown RBP3.34□□□□□ -1.87
USP47-204ENST00000525078 RRAS2P62070 204 aaPredicted RBP3.34□□□□□ -1.87
USP47-204ENST00000525078 NCS1P62166 190 aa3.34□□□□□ -1.87
USP47-204ENST00000525078 HBBP68871 147 aa3.34□□□□□ -1.87
USP47-204ENST00000525078 MYL5Q02045 173 aa3.34□□□□□ -1.87
USP47-204ENST00000525078 KPRPQ5T749 579 aaPredicted RBP3.34□□□□□ -1.87
USP47-204ENST00000525078 EIF5AL1Q6IS14 154 aaKnown RBP3.34□□□□□ -1.87
USP47-204ENST00000525078 SPINT4Q6UDR6 99 aa3.34□□□□□ -1.87
USP47-204ENST00000525078 C1orf64Q8NEQ6 169 aa3.34□□□□□ -1.87
USP47-204ENST00000525078 TMEM106AQ96A25 262 aa3.34□□□□□ -1.87
USP47-204ENST00000525078 OR8B2Q96RD0 313 aa3.34□□□□□ -1.87
USP47-204ENST00000525078 TP53RKQ96S44 253 aa3.34□□□□□ -1.87
USP47-204ENST00000525078 PRADC1Q9BSG0 188 aa3.34□□□□□ -1.87
USP47-204ENST00000525078 LPAR5Q9H1C0 372 aa3.34□□□□□ -1.87
USP47-204ENST00000525078 DUSP21Q9H596 190 aa3.34□□□□□ -1.87
USP47-204ENST00000525078 MRPL16Q9NX20 251 aaKnown RBP3.34□□□□□ -1.87
USP47-204ENST00000525078 DOCK4Q8N1I0 1966 aa3.34□□□□□ -1.88
USP47-204ENST00000525078 ANKRD50Q9ULJ7 1429 aa3.34□□□□□ -1.88
USP47-204ENST00000525078 A2MP01023 1474 aa3.34□□□□□ -1.88
USP47-204ENST00000525078 MYOM2P54296 1465 aa3.34□□□□□ -1.88
USP47-204ENST00000525078 PREX2Q70Z35 1606 aa3.33□□□□□ -1.88
USP47-204ENST00000525078 SCN4AP35499 1836 aa3.33□□□□□ -1.88
USP47-204ENST00000525078 TUBGCP6Q96RT7 1819 aa3.33□□□□□ -1.88
USP47-204ENST00000525078 MYH11P35749 1972 aa3.33□□□□□ -1.88
USP47-204ENST00000525078 MEIKINA0A087WXM9 373 aa3.33□□□□□ -1.88
USP47-204ENST00000525078 TRAV40A0A0B4J280 105 aa3.33□□□□□ -1.88
USP47-204ENST00000525078 IGHV1-58A0A0C4DH39 117 aa3.33□□□□□ -1.88
USP47-204ENST00000525078 GAS8-AS1O95177 125 aa3.33□□□□□ -1.88
USP47-204ENST00000525078 TCL1BO95988 128 aa3.33□□□□□ -1.88
USP47-204ENST00000525078 RPL35P42766 123 aaKnown RBP3.33□□□□□ -1.88
USP47-204ENST00000525078 SUPT4H1P63272 117 aaKnown RBP3.33□□□□□ -1.88
USP47-204ENST00000525078 MSRB3Q8IXL7 192 aa3.33□□□□□ -1.88
USP47-204ENST00000525078 TEX29Q8N6K0 151 aa3.33□□□□□ -1.88
USP47-204ENST00000525078 Q8N9L7 120 aa3.33□□□□□ -1.88
USP47-204ENST00000525078 Q8NAQ8 132 aa3.33□□□□□ -1.88
USP47-204ENST00000525078 BRK1Q8WUW1 75 aa3.33□□□□□ -1.88
USP47-204ENST00000525078 EPDR1Q9UM22 224 aa3.33□□□□□ -1.88
USP47-204ENST00000525078 BAIAP2Q9UQB8 552 aa3.33□□□□□ -1.88
USP47-204ENST00000525078 ERBINQ96RT1 1412 aa3.33□□□□□ -1.88
USP47-204ENST00000525078 IFT140Q96RY7 1462 aa3.33□□□□□ -1.88
USP47-204ENST00000525078 ZC3H13Q5T200 1668 aaKnown RBP3.33□□□□□ -1.88
USP47-204ENST00000525078 MEIS3P1A6NDR6 274 aa3.32□□□□□ -1.88
USP47-204ENST00000525078 C11orf86A6NJI1 115 aa3.32□□□□□ -1.88
USP47-204ENST00000525078 K7EM74 188 aa3.32□□□□□ -1.88
USP47-204ENST00000525078 K7ERU9 68 aa3.32□□□□□ -1.88
USP47-204ENST00000525078 DNAH10OSP0CZ25 163 aa3.32□□□□□ -1.88
USP47-204ENST00000525078 ZNF728P0DKX0 622 aa3.32□□□□□ -1.88
USP47-204ENST00000525078 P0DMU3 169 aa3.32□□□□□ -1.88
USP47-204ENST00000525078 FAM231AP0DMU4 169 aa3.32□□□□□ -1.88
USP47-204ENST00000525078 FAM231CP0DMU5 169 aa3.32□□□□□ -1.88
USP47-204ENST00000525078 TMEM244Q5VVB8 128 aa3.32□□□□□ -1.88
USP47-204ENST00000525078 LYPD6Q86Y78 171 aa3.32□□□□□ -1.88
USP47-204ENST00000525078 PFN4Q8NHR9 129 aa3.32□□□□□ -1.88
USP47-204ENST00000525078 ARL11Q969Q4 196 aa3.32□□□□□ -1.88
USP47-204ENST00000525078 CBLN4Q9NTU7 201 aa3.32□□□□□ -1.88
USP47-204ENST00000525078 OR5AC2Q9NZP5 309 aa3.32□□□□□ -1.88
USP47-204ENST00000525078 ERG28Q9UKR5 140 aa3.32□□□□□ -1.88
USP47-204ENST00000525078 MED1Q15648 1581 aaPredicted RBP3.32□□□□□ -1.88
USP47-204ENST00000525078 ABCA9Q8IUA7 1624 aa3.32□□□□□ -1.88
USP47-204ENST00000525078 LTBP4Q8N2S1 1624 aa3.32□□□□□ -1.88
USP47-204ENST00000525078 IFT172Q9UG01 1749 aa3.32□□□□□ -1.88
USP47-204ENST00000525078 UBR2Q8IWV8 1755 aa3.32□□□□□ -1.88
USP47-204ENST00000525078 NUP210Q8TEM1 1887 aaPredicted RBP3.32□□□□□ -1.88
USP47-204ENST00000525078 TRPM3Q9HCF6 1732 aaPredicted RBP3.31□□□□□ -1.88
USP47-204ENST00000525078 ANKRD26Q9UPS8 1709 aa3.31□□□□□ -1.88
USP47-204ENST00000525078 DEPDC5O75140 1603 aa3.31□□□□□ -1.88
USP47-204ENST00000525078 ABCA8O94911 1581 aa3.31□□□□□ -1.88
USP47-204ENST00000525078 SETBP1Q9Y6X0 1596 aa3.31□□□□□ -1.88
USP47-204ENST00000525078 TRPM2O94759 1503 aa3.31□□□□□ -1.88
USP47-204ENST00000525078 MED14O60244 1454 aa3.31□□□□□ -1.88
USP47-204ENST00000525078 TRAPPC8Q9Y2L5 1435 aa3.31□□□□□ -1.88
USP47-204ENST00000525078 TRGV5A0A0B4J1U4 118 aa3.31□□□□□ -1.88
USP47-204ENST00000525078 TRAV13-1A0A0B4J241 112 aa3.31□□□□□ -1.88
USP47-204ENST00000525078 A0A1B0GU33 70 aa3.31□□□□□ -1.88
USP47-204ENST00000525078 C3orf84H3BNL1 204 aa3.31□□□□□ -1.88
USP47-204ENST00000525078 K7ERJ3 54 aa3.31□□□□□ -1.88
USP47-204ENST00000525078 HIST1H2BKO60814 126 aa3.31□□□□□ -1.88
USP47-204ENST00000525078 PGLYRP1O75594 196 aaPredicted RBP3.31□□□□□ -1.88
USP47-204ENST00000525078 HIST1H2BJP06899 126 aa3.31□□□□□ -1.88
USP47-204ENST00000525078 COL8A2P25067 703 aa3.31□□□□□ -1.88
USP47-204ENST00000525078 S100PP25815 95 aa3.31□□□□□ -1.88
USP47-204ENST00000525078 KRTAP25-1Q3LHN0 102 aa3.31□□□□□ -1.88
USP47-204ENST00000525078 Q6ZS52 159 aa3.31□□□□□ -1.88
USP47-204ENST00000525078 PDZD9Q8IXQ8 264 aa3.31□□□□□ -1.88
USP47-204ENST00000525078 SLC30A7Q8NEW0 376 aa3.31□□□□□ -1.88
USP47-204ENST00000525078 OR5D16Q8NGK9 328 aa3.31□□□□□ -1.88
USP47-204ENST00000525078 ZNF471Q9BX82 626 aaPredicted RBP3.31□□□□□ -1.88
USP47-204ENST00000525078 KRTAP1-5Q9BYS1 174 aa3.31□□□□□ -1.88
USP47-204ENST00000525078 PRR34Q9NV39 138 aa3.31□□□□□ -1.88
USP47-204ENST00000525078 KLK12Q9UKR0 248 aa3.31□□□□□ -1.88
USP47-204ENST00000525078 MINOS1-NBL1R4GNA1 71 aa3.31□□□□□ -1.88
USP47-204ENST00000525078 DENND4CQ5VZ89 1909 aa3.31□□□□□ -1.88
USP47-204ENST00000525078 NUP210LQ5VU65 1888 aa3.3□□□□□ -1.88
USP47-204ENST00000525078 CDC42BPGQ6DT37 1551 aa3.3□□□□□ -1.88
USP47-204ENST00000525078 URB2Q14146 1524 aaKnown RBP3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms