RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 SDHCQ99643 169 aaPredicted RBP3.44□□□□□ -1.86
VCAN-209ENST00000513016 RARRES2Q99969 163 aa3.44□□□□□ -1.86
VCAN-209ENST00000513016 ABCA7Q8IZY2 2146 aa3.44□□□□□ -1.86
VCAN-209ENST00000513016 CACNA1CQ13936 2221 aa3.44□□□□□ -1.86
VCAN-209ENST00000513016 NPIPB5A8MRT5 1133 aa3.44□□□□□ -1.86
VCAN-209ENST00000513016 FXYD7P58549 80 aa3.44□□□□□ -1.86
VCAN-209ENST00000513016 EFNB1P98172 346 aa3.44□□□□□ -1.86
VCAN-209ENST00000513016 NMSQ5H8A3 153 aa3.44□□□□□ -1.86
VCAN-209ENST00000513016 COQ2Q96H96 371 aa3.44□□□□□ -1.86
VCAN-209ENST00000513016 EDA2RQ9HAV5 297 aa3.44□□□□□ -1.86
VCAN-209ENST00000513016 CLDN16Q9Y5I7 305 aa3.44□□□□□ -1.86
VCAN-209ENST00000513016 TET1Q8NFU7 2136 aa3.44□□□□□ -1.86
VCAN-209ENST00000513016 A8MWV9 139 aa3.44□□□□□ -1.86
VCAN-209ENST00000513016 TNFRSF6BO95407 300 aa3.44□□□□□ -1.86
VCAN-209ENST00000513016 PLNP26678 52 aa3.44□□□□□ -1.86
VCAN-209ENST00000513016 CCL18P55774 89 aa3.44□□□□□ -1.86
VCAN-209ENST00000513016 KLF17Q5JT82 389 aaPredicted RBP3.44□□□□□ -1.86
VCAN-209ENST00000513016 LINC00469Q8N7U9 141 aa3.44□□□□□ -1.86
VCAN-209ENST00000513016 PMS2P5A8MQ11 134 aa3.44□□□□□ -1.86
VCAN-209ENST00000513016 TTC32Q5I0X7 151 aa3.44□□□□□ -1.86
VCAN-209ENST00000513016 CLPSL1A2RUU4 121 aa3.44□□□□□ -1.86
VCAN-209ENST00000513016 LHBP01229 141 aa3.44□□□□□ -1.86
VCAN-209ENST00000513016 LOXP28300 417 aaPredicted RBP3.44□□□□□ -1.86
VCAN-209ENST00000513016 INSL3P51460 131 aa3.44□□□□□ -1.86
VCAN-209ENST00000513016 PRSS57Q6UWY2 283 aa3.44□□□□□ -1.86
VCAN-209ENST00000513016 WFDC12Q8WWY7 111 aa3.44□□□□□ -1.86
VCAN-209ENST00000513016 PNRC2Q9NPJ4 139 aaKnown RBP3.44□□□□□ -1.86
VCAN-209ENST00000513016 XCL2Q9UBD3 114 aa3.44□□□□□ -1.86
VCAN-209ENST00000513016 PCM1Q15154 2024 aa3.44□□□□□ -1.86
VCAN-209ENST00000513016 K7ERU9 68 aa3.44□□□□□ -1.86
VCAN-209ENST00000513016 LGALS1P09382 135 aaKnown RBP3.44□□□□□ -1.86
VCAN-209ENST00000513016 FAM120AOSQ5T036 256 aa3.44□□□□□ -1.86
VCAN-209ENST00000513016 TEX43Q6ZNM6 134 aa3.44□□□□□ -1.86
VCAN-209ENST00000513016 TRBV25-1A0A075B6N4 114 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 RAMP3O60896 148 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 NDPQ00604 133 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 VWC2Q2TAL6 325 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 TMEM256Q8N2U0 113 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 SCRT1Q9BWW7 348 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 ASXL3Q9C0F0 2248 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 IGHV2-70P01814 119 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 FBXL19-AS1Q494R0 122 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 ATP5L2Q7Z4Y8 100 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 TRPT1Q86TN4 253 aaKnown RBP3.43□□□□□ -1.86
VCAN-209ENST00000513016 ZNF646O15015 1829 aaPredicted RBP3.43□□□□□ -1.86
VCAN-209ENST00000513016 TUBGCP6Q96RT7 1819 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 STAG3L3P0CL85 134 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 PYYP10082 97 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 SPAG8Q99932 426 aaPredicted RBP3.43□□□□□ -1.86
VCAN-209ENST00000513016 SIPA1L1O43166 1804 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 GP9P14770 177 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 ATP5G3P48201 142 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 RIPPLY3P57055 190 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 LHFPL4Q7Z7J7 247 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 MBD3L1Q8WWY6 194 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 SMPXQ9UHP9 88 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 IGKV2-40A0A087WW87 121 aaPredicted RBP3.43□□□□□ -1.86
VCAN-209ENST00000513016 TMEM89A2RUT3 159 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 TSPAN13O95857 204 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 IGKV2D-40P01614 121 aaPredicted RBP3.43□□□□□ -1.86
VCAN-209ENST00000513016 PFN1P07737 140 aaKnown RBP3.43□□□□□ -1.86
VCAN-209ENST00000513016 GNG5P63218 68 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 IFITM2Q01629 132 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 LOXL1Q08397 574 aaPredicted RBP3.43□□□□□ -1.86
VCAN-209ENST00000513016 SHISA2Q6UWI4 295 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 ZNF833PQ6ZTB9 187 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 C8orf31Q8N9H6 132 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 C18orf15Q96N68 181 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 SVILO95425 2214 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 IGKV3D-20A0A0C4DH25 116 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 SHISA9B4DS77 424 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 HBDP02042 147 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 SMIM13P0DJ93 91 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 ZNF25P17030 456 aaPredicted RBP3.43□□□□□ -1.86
VCAN-209ENST00000513016 AZU1P20160 251 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 KIAA1644Q3SXP7 199 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 GGTLC1Q9BX51 225 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 SLC25A2Q9BXI2 301 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 UQCR10Q9UDW1 63 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 PAM16Q9Y3D7 125 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 SPTA1P02549 2419 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 IGHV4-30-2A0A087WSY4 118 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 SPART-AS1P0CW21 52 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 ADORA2A-AS1P86434 159 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 SHANK2-AS3Q9BTD1 123 aa3.43□□□□□ -1.86
VCAN-209ENST00000513016 MTCL1Q9Y4B5 1905 aaKnown RBP3.42□□□□□ -1.86
VCAN-209ENST00000513016 ARID2Q68CP9 1835 aa3.42□□□□□ -1.86
VCAN-209ENST00000513016 SCN5AQ14524 2016 aa3.42□□□□□ -1.86
VCAN-209ENST00000513016 PAX4O43316 350 aa3.42□□□□□ -1.86
VCAN-209ENST00000513016 TRGC2P03986 189 aa3.42□□□□□ -1.86
VCAN-209ENST00000513016 RNASE2P10153 161 aaKnown RBP3.42□□□□□ -1.86
VCAN-209ENST00000513016 CHTOPQ9Y3Y2 248 aaKnown RBP3.42□□□□□ -1.86
VCAN-209ENST00000513016 IGHV1OR15-1A0A075B7D0 117 aa3.42□□□□□ -1.86
VCAN-209ENST00000513016 IGHV4-61A0A0C4DH41 118 aa3.42□□□□□ -1.86
VCAN-209ENST00000513016 HIGD1CA8MV81 97 aa3.42□□□□□ -1.86
VCAN-209ENST00000513016 DPM2O94777 84 aa3.42□□□□□ -1.86
VCAN-209ENST00000513016 SPATA45Q537H7 98 aa3.42□□□□□ -1.86
VCAN-209ENST00000513016 ATP6V0BQ99437 205 aa3.42□□□□□ -1.86
VCAN-209ENST00000513016 PROK2Q9HC23 129 aa3.42□□□□□ -1.86
VCAN-209ENST00000513016 GGTLC3B5MD39 225 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms