RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 RHODO00212 210 aa9.71□□□□□ -0.85
LIMCH1-213ENST00000511496 ZNF688P0C7X2 276 aa9.71□□□□□ -0.85
LIMCH1-213ENST00000511496 C7orf69Q9H7B7 122 aa9.71□□□□□ -0.85
LIMCH1-213ENST00000511496 PROK2Q9HC23 129 aa9.71□□□□□ -0.85
LIMCH1-213ENST00000511496 RAB9BQ9NP90 201 aa9.71□□□□□ -0.85
LIMCH1-213ENST00000511496 SOX21Q9Y651 276 aaPredicted RBP9.71□□□□□ -0.85
LIMCH1-213ENST00000511496 LAMA1P25391 3075 aa9.71□□□□□ -0.85
LIMCH1-213ENST00000511496 DOCK10Q96BY6 2186 aa9.71□□□□□ -0.85
LIMCH1-213ENST00000511496 TET2Q6N021 2002 aaPredicted RBP9.71□□□□□ -0.85
LIMCH1-213ENST00000511496 TFF1P04155 84 aa9.71□□□□□ -0.86
LIMCH1-213ENST00000511496 DLX4Q92988 240 aaPredicted RBP9.71□□□□□ -0.86
LIMCH1-213ENST00000511496 FLYWCH2Q96CP2 140 aaKnown RBP9.71□□□□□ -0.86
LIMCH1-213ENST00000511496 PKIBQ9C010 78 aa9.71□□□□□ -0.86
LIMCH1-213ENST00000511496 BRWD1Q9NSI6 2320 aa9.71□□□□□ -0.86
LIMCH1-213ENST00000511496 HOXA4Q00056 320 aaPredicted RBP9.7□□□□□ -0.86
LIMCH1-213ENST00000511496 FOXF2Q12947 444 aa9.7□□□□□ -0.86
LIMCH1-213ENST00000511496 AAED1Q7RTV5 226 aa9.7□□□□□ -0.86
LIMCH1-213ENST00000511496 ATP6V0E2Q8NHE4 81 aa9.7□□□□□ -0.86
LIMCH1-213ENST00000511496 NDUFS7O75251 213 aa9.7□□□□□ -0.86
LIMCH1-213ENST00000511496 HBDP02042 147 aa9.7□□□□□ -0.86
LIMCH1-213ENST00000511496 SRYQ05066 204 aa9.7□□□□□ -0.86
LIMCH1-213ENST00000511496 ZC2HC1BQ5TFG8 222 aa9.7□□□□□ -0.86
LIMCH1-213ENST00000511496 ZFP2Q6ZN57 461 aa9.7□□□□□ -0.86
LIMCH1-213ENST00000511496 LINC00596Q86U02 117 aa9.7□□□□□ -0.86
LIMCH1-213ENST00000511496 SLC25A2Q9BXI2 301 aa9.7□□□□□ -0.86
LIMCH1-213ENST00000511496 FBXL15Q9H469 300 aa9.7□□□□□ -0.86
LIMCH1-213ENST00000511496 ABCA1O95477 2261 aa9.7□□□□□ -0.86
LIMCH1-213ENST00000511496 A0A1W2PQF6 199 aa9.7□□□□□ -0.86
LIMCH1-213ENST00000511496 D6R8Y8 96 aa9.7□□□□□ -0.86
LIMCH1-213ENST00000511496 CRLF1O75462 422 aa9.7□□□□□ -0.86
LIMCH1-213ENST00000511496 IL4P05112 153 aa9.7□□□□□ -0.86
LIMCH1-213ENST00000511496 ASCL2Q99929 193 aa9.7□□□□□ -0.86
LIMCH1-213ENST00000511496 A0A1B0GUT8 65 aa9.69□□□□□ -0.86
LIMCH1-213ENST00000511496 IGHV3-48P01763 117 aa9.69□□□□□ -0.86
LIMCH1-213ENST00000511496 FAM167A-AS1Q96KT0 104 aa9.69□□□□□ -0.86
LIMCH1-213ENST00000511496 SPRY4Q9C004 299 aa9.69□□□□□ -0.86
LIMCH1-213ENST00000511496 MEOX1P50221 254 aa9.69□□□□□ -0.86
LIMCH1-213ENST00000511496 PCBD1P61457 104 aa9.69□□□□□ -0.86
LIMCH1-213ENST00000511496 EIF4EBP1Q13541 118 aaPredicted RBP9.69□□□□□ -0.86
LIMCH1-213ENST00000511496 RUNX3Q13761 415 aa9.69□□□□□ -0.86
LIMCH1-213ENST00000511496 C5orf47Q569G3 176 aa9.69□□□□□ -0.86
LIMCH1-213ENST00000511496 CIARTQ8N365 385 aaPredicted RBP9.69□□□□□ -0.86
LIMCH1-213ENST00000511496 MAPKAPK5-AS1Q8N8E1 139 aa9.69□□□□□ -0.86
LIMCH1-213ENST00000511496 SMRP1Q8NCR6 262 aa9.69□□□□□ -0.86
LIMCH1-213ENST00000511496 SRSF12Q8WXF0 261 aaKnown RBP9.69□□□□□ -0.86
LIMCH1-213ENST00000511496 TMEM160Q9NX00 188 aa9.69□□□□□ -0.86
LIMCH1-213ENST00000511496 EPDR1Q9UM22 224 aa9.69□□□□□ -0.86
LIMCH1-213ENST00000511496 CSDC2Q9Y534 153 aaKnown RBP9.69□□□□□ -0.86
LIMCH1-213ENST00000511496 ADAMTS20P59510 1910 aa9.69□□□□□ -0.86
LIMCH1-213ENST00000511496 FREM1Q5H8C1 2179 aa9.69□□□□□ -0.86
LIMCH1-213ENST00000511496 TRAV8-1A0A0A6YYK1 113 aa9.69□□□□□ -0.86
LIMCH1-213ENST00000511496 TRAV8-2A0A0B4J237 113 aa9.69□□□□□ -0.86
LIMCH1-213ENST00000511496 HOXA3O43365 443 aaPredicted RBP9.69□□□□□ -0.86
LIMCH1-213ENST00000511496 SLC22A18ASQ8N1D0 253 aa9.69□□□□□ -0.86
LIMCH1-213ENST00000511496 ITLN1Q8WWA0 313 aa9.69□□□□□ -0.86
LIMCH1-213ENST00000511496 A0A0J9YW62 118 aa9.68□□□□□ -0.86
LIMCH1-213ENST00000511496 COX7A2P2O60397 106 aa9.68□□□□□ -0.86
LIMCH1-213ENST00000511496 DUTP33316 252 aaKnown RBP9.68□□□□□ -0.86
LIMCH1-213ENST00000511496 DEFB132Q7Z7B7 95 aa9.68□□□□□ -0.86
LIMCH1-213ENST00000511496 TEN1Q86WV5 123 aa9.68□□□□□ -0.86
LIMCH1-213ENST00000511496 PLCE1Q9P212 2302 aa9.68□□□□□ -0.86
LIMCH1-213ENST00000511496 DSCAML1Q8TD84 2053 aa9.68□□□□□ -0.86
LIMCH1-213ENST00000511496 HAX1O00165 279 aa9.68□□□□□ -0.86
LIMCH1-213ENST00000511496 GLRXP35754 106 aa9.68□□□□□ -0.86
LIMCH1-213ENST00000511496 Q6ZQT7 251 aa9.68□□□□□ -0.86
LIMCH1-213ENST00000511496 VWCEQ96DN2 955 aa9.68□□□□□ -0.86
LIMCH1-213ENST00000511496 SRXN1Q9BYN0 137 aa9.68□□□□□ -0.86
LIMCH1-213ENST00000511496 PRSS22Q9GZN4 317 aa9.68□□□□□ -0.86
LIMCH1-213ENST00000511496 PSPNO60542 156 aa9.68□□□□□ -0.86
LIMCH1-213ENST00000511496 FCN3O75636 299 aa9.68□□□□□ -0.86
LIMCH1-213ENST00000511496 SRD5A1P18405 259 aa9.68□□□□□ -0.86
LIMCH1-213ENST00000511496 ZNF157P51786 506 aaPredicted RBP9.68□□□□□ -0.86
LIMCH1-213ENST00000511496 RIGQ13278 110 aa9.68□□□□□ -0.86
LIMCH1-213ENST00000511496 PPP1R27Q86WC6 154 aa9.68□□□□□ -0.86
LIMCH1-213ENST00000511496 OR1L8Q8NGR8 309 aa9.68□□□□□ -0.86
LIMCH1-213ENST00000511496 UBTD1Q9HAC8 227 aa9.68□□□□□ -0.86
LIMCH1-213ENST00000511496 TMEM262E9PQX1 116 aa9.67□□□□□ -0.86
LIMCH1-213ENST00000511496 COL9A1P20849 921 aa9.67□□□□□ -0.86
LIMCH1-213ENST00000511496 MRPL23Q16540 153 aaKnown RBP9.67□□□□□ -0.86
LIMCH1-213ENST00000511496 TMEM196Q5HYL7 178 aa9.67□□□□□ -0.86
LIMCH1-213ENST00000511496 KLF17Q5JT82 389 aaPredicted RBP9.67□□□□□ -0.86
LIMCH1-213ENST00000511496 PDPNQ86YL7 162 aa9.67□□□□□ -0.86
LIMCH1-213ENST00000511496 TMEM8BA6NDV4 472 aa9.67□□□□□ -0.86
LIMCH1-213ENST00000511496 SMKR1H3BMG3 65 aa9.67□□□□□ -0.86
LIMCH1-213ENST00000511496 SP1P08047 785 aa9.67□□□□□ -0.86
LIMCH1-213ENST00000511496 VEGFBP49765 207 aa9.67□□□□□ -0.86
LIMCH1-213ENST00000511496 RPL39P5Q59GN2 51 aa9.67□□□□□ -0.86
LIMCH1-213ENST00000511496 DCTN5Q9BTE1 182 aa9.67□□□□□ -0.86
LIMCH1-213ENST00000511496 PRDM14Q9GZV8 571 aa9.67□□□□□ -0.86
LIMCH1-213ENST00000511496 EML6Q6ZMW3 1958 aa9.67□□□□□ -0.86
LIMCH1-213ENST00000511496 CENPVL3A0A0U1RRI6 287 aa9.66□□□□□ -0.86
LIMCH1-213ENST00000511496 LOC107984640A0A0U1RRK4 108 aa9.66□□□□□ -0.86
LIMCH1-213ENST00000511496 TMEM30CPA0ZSE6 113 aa9.66□□□□□ -0.86
LIMCH1-213ENST00000511496 LINC01549A6NIU2 74 aa9.66□□□□□ -0.86
LIMCH1-213ENST00000511496 MPV17P39210 176 aa9.66□□□□□ -0.86
LIMCH1-213ENST00000511496 Q71RC1 249 aaPredicted RBP9.66□□□□□ -0.86
LIMCH1-213ENST00000511496 WDR31Q8NA23 367 aa9.66□□□□□ -0.86
LIMCH1-213ENST00000511496 HHLA3Q9XRX5 114 aa9.66□□□□□ -0.86
LIMCH1-213ENST00000511496 MRPS17Q9Y2R5 130 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-213ENST00000511496 IGKCP01834 107 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms